HEADER DNA BINDING PROTEIN 30-OCT-25 9YZT TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE TAATTAGGCCG AND LOADED WITH ANTENNAPEDIA TITLE 3 HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: HOMEOTIC PROTEIN ANTENNAPEDIA; COMPND 19 CHAIN: D, E; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: ANTENNAPEDIA HOMEODOMAIN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 17 ORGANISM_COMMON: FRUIT FLY; SOURCE 18 ORGANISM_TAXID: 7227; SOURCE 19 GENE: ANTP, CG1028; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZT 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 17991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.284 REMARK 3 R VALUE (WORKING SET) : 0.283 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1300 - 7.7500 0.98 1291 143 0.2283 0.2474 REMARK 3 2 7.7500 - 6.1500 0.99 1263 140 0.2934 0.2590 REMARK 3 3 6.1500 - 5.3800 1.00 1282 151 0.2745 0.2681 REMARK 3 4 5.3800 - 4.8900 1.00 1272 131 0.2740 0.2989 REMARK 3 5 4.8900 - 4.5400 0.99 1246 144 0.2614 0.3055 REMARK 3 6 4.5400 - 4.2700 0.98 1261 131 0.2882 0.2964 REMARK 3 7 4.2700 - 4.0600 0.96 1209 143 0.2934 0.2936 REMARK 3 8 4.0600 - 3.8800 0.98 1284 121 0.3043 0.3110 REMARK 3 9 3.8800 - 3.7300 0.98 1220 146 0.3229 0.3610 REMARK 3 10 3.7300 - 3.6000 0.97 1226 149 0.3650 0.3674 REMARK 3 11 3.6000 - 3.4900 0.98 1234 124 0.3822 0.3701 REMARK 3 12 3.4900 - 3.3900 0.95 1222 131 0.4423 0.4849 REMARK 3 13 3.3900 - 3.3000 0.97 1183 144 0.4684 0.4972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.537 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 118.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 149.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3827 REMARK 3 ANGLE : 0.508 5384 REMARK 3 CHIRALITY : 0.037 617 REMARK 3 PLANARITY : 0.004 485 REMARK 3 DIHEDRAL : 23.971 1494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000299466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22292 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.080 REMARK 200 RESOLUTION RANGE LOW (A) : 46.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30MM MAGNESIUM ACETATE, 1.1M LITHIUM REMARK 280 SULFATE, 50MM MES PH 6.5. THE CRYSTAL WAS CROSSLINKED WITH REMARK 280 47.5MG/ML EDC OVERNIGHT, AND THEN LOOPED INTO A SOLUTION OF 50MM REMARK 280 POTASSIUM CHLORIDE, 4MM CALCIUM CHLORIDE, 10% GLYCEROL, AND 10MM REMARK 280 TRIS HYDROCHLORIDE FOR 1 HOUR. THE DROP WAS THEN SUPPLEMENTED REMARK 280 WITH 23 MICROMOLAR EVEN-SKIPPED HOMEODOMAIN., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.08968 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.47640 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.08968 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 67.47640 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 465 GLY D -1 REMARK 465 THR D 0 REMARK 465 ARG D 1 REMARK 465 LYS D 2 REMARK 465 ARG D 3 REMARK 465 GLY D 4 REMARK 465 ARG D 5 REMARK 465 ASN D 60 REMARK 465 GLY E -1 REMARK 465 THR E 0 REMARK 465 ARG E 1 REMARK 465 LYS E 2 REMARK 465 ARG E 3 REMARK 465 GLY E 4 REMARK 465 GLN E 6 REMARK 465 THR E 7 REMARK 465 TYR E 8 REMARK 465 THR E 9 REMARK 465 ARG E 10 REMARK 465 PHE E 20 REMARK 465 HIS E 21 REMARK 465 PHE E 22 REMARK 465 ASN E 23 REMARK 465 LYS E 58 REMARK 465 GLU E 59 REMARK 465 ASN E 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 LYS C 80 CG CD CE NZ REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 6 CG CD OE1 NE2 REMARK 470 ARG D 10 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 12 CG CD OE1 NE2 REMARK 470 LEU D 14 CG CD1 CD2 REMARK 470 GLU D 15 CG CD OE1 OE2 REMARK 470 LEU D 16 CG CD1 CD2 REMARK 470 LYS D 18 CG CD CE NZ REMARK 470 GLU D 19 CG CD OE1 OE2 REMARK 470 HIS D 21 CG ND1 CD2 CE1 NE2 REMARK 470 PHE D 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN D 23 CG OD1 ND2 REMARK 470 ARG D 24 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 26 CG CD1 CD2 REMARK 470 THR D 27 OG1 CG2 REMARK 470 ARG D 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 30 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 32 CG1 CG2 CD1 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 ILE D 34 CG1 CG2 CD1 REMARK 470 HIS D 36 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 38 CG CD1 CD2 REMARK 470 CYS D 39 SG REMARK 470 LEU D 40 CG CD1 CD2 REMARK 470 THR D 41 OG1 CG2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 44 CG CD OE1 NE2 REMARK 470 ILE D 45 CG1 CG2 CD1 REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 ILE D 47 CG1 CG2 CD1 REMARK 470 GLN D 50 CG CD OE1 NE2 REMARK 470 ARG D 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 55 CG CD CE NZ REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 ARG E 5 NE CZ NH1 NH2 REMARK 470 TYR E 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN E 12 CG CD OE1 NE2 REMARK 470 LEU E 14 CG CD1 CD2 REMARK 470 GLU E 15 CG CD OE1 OE2 REMARK 470 LEU E 16 CG CD1 CD2 REMARK 470 GLU E 17 CG CD OE1 OE2 REMARK 470 LYS E 18 CG CD CE NZ REMARK 470 GLU E 19 CG CD OE1 OE2 REMARK 470 ARG E 24 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 26 CG CD1 CD2 REMARK 470 THR E 27 OG1 CG2 REMARK 470 ARG E 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 30 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 31 CG CD NE CZ NH1 NH2 REMARK 470 ILE E 32 CG1 CG2 CD1 REMARK 470 GLU E 33 CG CD OE1 OE2 REMARK 470 ILE E 34 CG1 CG2 CD1 REMARK 470 HIS E 36 CG ND1 CD2 CE1 NE2 REMARK 470 LEU E 38 CG CD1 CD2 REMARK 470 CYS E 39 SG REMARK 470 LEU E 40 CG CD1 CD2 REMARK 470 GLU E 42 CG CD OE1 OE2 REMARK 470 ARG E 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 44 CD OE1 NE2 REMARK 470 ILE E 45 CG1 CG2 CD1 REMARK 470 LYS E 46 CG CD CE NZ REMARK 470 ILE E 47 CG1 CG2 CD1 REMARK 470 TRP E 48 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 48 CZ3 CH2 REMARK 470 PHE E 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN E 50 CG CD OE1 NE2 REMARK 470 ASN E 51 CG OD1 ND2 REMARK 470 ARG E 52 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 53 CG CD NE CZ NH1 NH2 REMARK 470 MET E 54 CG SD CE REMARK 470 LYS E 55 CG CD CE NZ REMARK 470 TRP E 56 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 56 CZ3 CH2 REMARK 470 LYS E 57 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -106.02 -119.05 REMARK 500 ARG C 145 75.66 -114.56 REMARK 500 PHE C 208 -66.97 -106.93 REMARK 500 GLN E 12 -116.10 54.71 REMARK 500 THR E 13 -42.22 72.15 REMARK 500 LYS E 18 -98.99 58.50 REMARK 500 THR E 27 -157.77 -92.27 REMARK 500 ARG E 30 -44.84 70.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 83.8 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB REMARK 900 RELATED ID: 9YZD RELATED DB: PDB REMARK 900 RELATED ID: 9YZE RELATED DB: PDB REMARK 900 RELATED ID: 9YZF RELATED DB: PDB REMARK 900 RELATED ID: 9YZG RELATED DB: PDB REMARK 900 RELATED ID: 9YZI RELATED DB: PDB REMARK 900 RELATED ID: 9YZJ RELATED DB: PDB REMARK 900 RELATED ID: 9YZK RELATED DB: PDB REMARK 900 RELATED ID: 9YZL RELATED DB: PDB REMARK 900 RELATED ID: 9YZM RELATED DB: PDB REMARK 900 RELATED ID: 9YZN RELATED DB: PDB REMARK 900 RELATED ID: 9YZO RELATED DB: PDB REMARK 900 RELATED ID: 9YZP RELATED DB: PDB REMARK 900 RELATED ID: 9YZQ RELATED DB: PDB REMARK 900 RELATED ID: 9YZR RELATED DB: PDB REMARK 900 RELATED ID: 9YZS RELATED DB: PDB DBREF 9YZT A 1 31 PDB 9YZT 9YZT 1 31 DBREF 9YZT B 12 42 PDB 9YZT 9YZT 12 42 DBREF 9YZT C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 9YZT D 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 9YZT E 1 60 UNP P02833 ANTP_DROME 297 356 SEQADV 9YZT MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZT ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZT GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZT SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZT HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZT GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZT SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZT PRO C 118 UNP P03856 ARG 118 CONFLICT SEQADV 9YZT GLY D -1 UNP P02833 EXPRESSION TAG SEQADV 9YZT THR D 0 UNP P02833 EXPRESSION TAG SEQADV 9YZT GLY E -1 UNP P02833 EXPRESSION TAG SEQADV 9YZT THR E 0 UNP P02833 EXPRESSION TAG SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DT DA DA DT DT DA SEQRES 3 A 31 DG DG DC DC DG SEQRES 1 B 31 DG DC DG DG DC DC DT DA DA DT DT DA DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 D 62 GLY THR ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR SEQRES 2 D 62 GLN THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG SEQRES 3 D 62 TYR LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA SEQRES 4 D 62 LEU CYS LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN SEQRES 5 D 62 ASN ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 E 62 GLY THR ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR SEQRES 2 E 62 GLN THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG SEQRES 3 E 62 TYR LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA SEQRES 4 E 62 LEU CYS LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN SEQRES 5 E 62 ASN ARG ARG MET LYS TRP LYS LYS GLU ASN HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 HELIX 13 AB4 THR D 9 ASN D 23 1 15 HELIX 14 AB5 THR D 27 LEU D 38 1 12 HELIX 15 AB6 THR D 41 GLU D 59 1 19 HELIX 16 AB7 THR E 27 LEU E 38 1 12 HELIX 17 AB8 THR E 41 LYS E 57 1 17 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ARG C 223 O ARG C 243 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.12 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.65 CRYST1 72.747 126.040 134.954 90.00 90.24 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013746 0.000000 0.000058 0.00000 SCALE2 0.000000 0.007934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007410 0.00000 CONECT 1730 3629 CONECT 1753 3629 CONECT 3629 1730 1753 MASTER 449 0 1 17 10 0 0 6 3606 5 3 37 END