HEADER HYDROLASE 03-NOV-25 9Z0X TITLE CRYSTAL STRUCTURE OF NEISSERIA GONORRHOEAE PENICILLIN-BINDING PROTEIN TITLE 2 2 FROM STRAIN FA19 CONTAINING SEVEN RESISTANCE MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PBP-2, PROBABLE PEPTIDOGLYCAN D,D-TRANSPEPTIDASE PENA; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE FA19; SOURCE 3 ORGANISM_TAXID: 528352; SOURCE 4 GENE: PENA, WHOF_00731, WHOF_01799C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMALC2KV KEYWDS PENICILLIN-BINDING PROTEIN, TRANSPEPTIDASE DOMAIN, N. GONORRHOEAE, KEYWDS 2 ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SINGH,S.BALA,C.DAVIES REVDAT 1 04-MAR-26 9Z0X 0 JRNL AUTH M.M.BIVINS,J.TOMBERG,M.BAGSHAW,A.SINGH,S.BALA,C.DAVIES, JRNL AUTH 2 R.A.NICHOLAS JRNL TITL INTERROGATING THE DELICATE BALANCE BETWEEN ANTIBIOTIC JRNL TITL 2 RESISTANCE AND ENZYMATIC FUNCTION IN PENICILLIN-BINDING JRNL TITL 3 PROTEIN 2 MUTATIONS FROM CEFTRIAXONE-RESISTANT NEISSERIA JRNL TITL 4 GONORRHOEAE STRAIN H041 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 44090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : -3.17000 REMARK 3 B33 (A**2) : 5.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5013 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4868 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6803 ; 1.739 ; 1.827 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11201 ; 0.618 ; 1.750 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 7.219 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ; 8.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 835 ;14.490 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 767 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5941 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1139 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2573 ; 2.061 ; 1.068 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2573 ; 2.059 ; 1.067 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3213 ; 2.970 ; 1.901 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3214 ; 2.970 ; 1.902 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2440 ; 2.631 ; 1.429 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2437 ; 2.611 ; 1.416 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3581 ; 4.096 ; 2.451 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5474 ; 9.402 ;12.840 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5462 ; 9.391 ;12.570 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 573 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4290 -9.5250 5.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.9304 T22: 0.5709 REMARK 3 T33: 0.0226 T12: 0.0597 REMARK 3 T13: 0.0942 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.4179 L22: 0.7548 REMARK 3 L33: 0.6656 L12: -0.4230 REMARK 3 L13: 0.3985 L23: -0.2030 REMARK 3 S TENSOR REMARK 3 S11: 0.1172 S12: -0.0275 S13: -0.0395 REMARK 3 S21: -0.3890 S22: -0.0825 S23: 0.0356 REMARK 3 S31: 0.1357 S32: 0.1390 S33: -0.0348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 574 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5040 8.6750 38.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.6287 T22: 0.5722 REMARK 3 T33: 0.1733 T12: 0.0032 REMARK 3 T13: 0.1376 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.9703 REMARK 3 L33: 0.4096 L12: -0.1997 REMARK 3 L13: -0.0584 L23: 0.2196 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0047 S13: -0.0140 REMARK 3 S21: 0.0847 S22: 0.0012 S23: 0.1448 REMARK 3 S31: -0.0147 S32: 0.0447 S33: -0.0242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Z0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000301823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9-10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 0.1 M CHES, PH 9.3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.41950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 465 GLY A 234 REMARK 465 GLY A 235 REMARK 465 VAL A 505 REMARK 465 ASN A 506 REMARK 465 GLY A 507 REMARK 465 ARG A 508 REMARK 465 TYR A 509 REMARK 465 ALA A 510 REMARK 465 ASP A 511 REMARK 465 ALA A 574 REMARK 465 GLY B 232 REMARK 465 SER B 233 REMARK 465 GLY B 234 REMARK 465 GLY B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 433 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 MET B 379 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 281 152.18 -49.82 REMARK 500 HIS A 440 42.78 -87.93 REMARK 500 LEU A 447 146.11 87.47 REMARK 500 HIS B 440 46.60 -93.35 REMARK 500 LEU B 447 146.75 89.66 REMARK 500 PRO B 568 152.12 -46.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 411 0.09 SIDE CHAIN REMARK 500 ARG B 356 0.09 SIDE CHAIN REMARK 500 ARG B 528 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 9Z0X A 237 574 UNP A0AB74EE38_NEIGO DBREF2 9Z0X A A0AB74EE38 237 574 DBREF1 9Z0X B 237 574 UNP A0AB74EE38_NEIGO DBREF2 9Z0X B A0AB74EE38 237 574 SEQADV 9Z0X GLY A 232 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X SER A 233 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY A 234 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY A 235 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X ALA A 236 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY A 297 UNP A0AB74EE3 ALA 283 CONFLICT SEQADV 9Z0X A UNP A0AB74EE3 TYR 284 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ASP 285 DELETION SEQADV 9Z0X A UNP A0AB74EE3 PRO 286 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ASN 287 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ARG 288 DELETION SEQADV 9Z0X A UNP A0AB74EE3 PRO 289 DELETION SEQADV 9Z0X A UNP A0AB74EE3 GLY 290 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ARG 291 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ALA 292 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ASP 293 DELETION SEQADV 9Z0X A UNP A0AB74EE3 SER 294 DELETION SEQADV 9Z0X A UNP A0AB74EE3 GLU 295 DELETION SEQADV 9Z0X A UNP A0AB74EE3 GLN 296 DELETION SEQADV 9Z0X A UNP A0AB74EE3 ARG 297 DELETION SEQADV 9Z0X VAL A 311 UNP A0AB74EE3 ALA 311 ENGINEERED MUTATION SEQADV 9Z0X MET A 312 UNP A0AB74EE3 ILE 312 ENGINEERED MUTATION SEQADV 9Z0X PRO A 316 UNP A0AB74EE3 VAL 316 ENGINEERED MUTATION SEQADV 9Z0X SER A 483 UNP A0AB74EE3 THR 483 ENGINEERED MUTATION SEQADV 9Z0X LEU A 504 UNP A0AB74EE3 PHE 504 ENGINEERED MUTATION SEQADV 9Z0X TYR A 512 UNP A0AB74EE3 ASN 512 ENGINEERED MUTATION SEQADV 9Z0X SER A 545 UNP A0AB74EE3 GLY 545 ENGINEERED MUTATION SEQADV 9Z0X GLY B 232 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X SER B 233 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY B 234 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY B 235 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X ALA B 236 UNP A0AB74EE3 EXPRESSION TAG SEQADV 9Z0X GLY B 297 UNP A0AB74EE3 ALA 283 CONFLICT SEQADV 9Z0X B UNP A0AB74EE3 TYR 284 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ASP 285 DELETION SEQADV 9Z0X B UNP A0AB74EE3 PRO 286 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ASN 287 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ARG 288 DELETION SEQADV 9Z0X B UNP A0AB74EE3 PRO 289 DELETION SEQADV 9Z0X B UNP A0AB74EE3 GLY 290 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ARG 291 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ALA 292 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ASP 293 DELETION SEQADV 9Z0X B UNP A0AB74EE3 SER 294 DELETION SEQADV 9Z0X B UNP A0AB74EE3 GLU 295 DELETION SEQADV 9Z0X B UNP A0AB74EE3 GLN 296 DELETION SEQADV 9Z0X B UNP A0AB74EE3 ARG 297 DELETION SEQADV 9Z0X VAL B 311 UNP A0AB74EE3 ALA 311 ENGINEERED MUTATION SEQADV 9Z0X MET B 312 UNP A0AB74EE3 ILE 312 ENGINEERED MUTATION SEQADV 9Z0X PRO B 316 UNP A0AB74EE3 VAL 316 ENGINEERED MUTATION SEQADV 9Z0X SER B 483 UNP A0AB74EE3 THR 483 ENGINEERED MUTATION SEQADV 9Z0X LEU B 504 UNP A0AB74EE3 PHE 504 ENGINEERED MUTATION SEQADV 9Z0X TYR B 512 UNP A0AB74EE3 ASN 512 ENGINEERED MUTATION SEQADV 9Z0X SER B 545 UNP A0AB74EE3 GLY 545 ENGINEERED MUTATION SEQRES 1 A 329 GLY SER GLY GLY ALA LEU SER LEU ASP GLN ARG ILE GLN SEQRES 2 A 329 THR LEU ALA TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR SEQRES 3 A 329 HIS GLN ALA LYS ALA GLY THR VAL VAL VAL LEU ASP ALA SEQRES 4 A 329 ARG THR GLY GLU ILE LEU ALA LEU ALA ASN THR PRO GLY SEQRES 5 A 329 ARG ASN ARG ALA VAL THR ASP MET ILE GLU PRO GLY SER SEQRES 6 A 329 VAL MET LYS PRO PHE PRO ILE ALA LYS ALA LEU ASP ALA SEQRES 7 A 329 GLY LYS THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO SEQRES 8 A 329 TYR LYS ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL SEQRES 9 A 329 TYR PRO SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SEQRES 10 A 329 SER ASN VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY SEQRES 11 A 329 ALA GLU GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE SEQRES 12 A 329 GLY VAL ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA SEQRES 13 A 329 GLY LEU LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU SEQRES 14 A 329 GLN ALA THR MET SER PHE GLY TYR GLY LEU GLN LEU SER SEQRES 15 A 329 LEU LEU GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS SEQRES 16 A 329 ASP GLY VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA SEQRES 17 A 329 VAL ALA PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR SEQRES 18 A 329 ALA ARG GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU SEQRES 19 A 329 PRO GLY GLY SER GLY THR ALA GLY ALA VAL ASP GLY PHE SEQRES 20 A 329 ASP VAL GLY ALA LYS THR GLY THR ALA ARG LYS LEU VAL SEQRES 21 A 329 ASN GLY ARG TYR ALA ASP TYR LYS HIS VAL ALA THR PHE SEQRES 22 A 329 ILE GLY PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL SEQRES 23 A 329 ALA VAL THR ILE ASP GLU PRO THR ALA ASN GLY TYR TYR SEQRES 24 A 329 SER GLY VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET SEQRES 25 A 329 GLY GLY SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS SEQRES 26 A 329 PRO LEU THR ALA SEQRES 1 B 329 GLY SER GLY GLY ALA LEU SER LEU ASP GLN ARG ILE GLN SEQRES 2 B 329 THR LEU ALA TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR SEQRES 3 B 329 HIS GLN ALA LYS ALA GLY THR VAL VAL VAL LEU ASP ALA SEQRES 4 B 329 ARG THR GLY GLU ILE LEU ALA LEU ALA ASN THR PRO GLY SEQRES 5 B 329 ARG ASN ARG ALA VAL THR ASP MET ILE GLU PRO GLY SER SEQRES 6 B 329 VAL MET LYS PRO PHE PRO ILE ALA LYS ALA LEU ASP ALA SEQRES 7 B 329 GLY LYS THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO SEQRES 8 B 329 TYR LYS ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL SEQRES 9 B 329 TYR PRO SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SEQRES 10 B 329 SER ASN VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY SEQRES 11 B 329 ALA GLU GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE SEQRES 12 B 329 GLY VAL ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA SEQRES 13 B 329 GLY LEU LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU SEQRES 14 B 329 GLN ALA THR MET SER PHE GLY TYR GLY LEU GLN LEU SER SEQRES 15 B 329 LEU LEU GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS SEQRES 16 B 329 ASP GLY VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA SEQRES 17 B 329 VAL ALA PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR SEQRES 18 B 329 ALA ARG GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU SEQRES 19 B 329 PRO GLY GLY SER GLY THR ALA GLY ALA VAL ASP GLY PHE SEQRES 20 B 329 ASP VAL GLY ALA LYS THR GLY THR ALA ARG LYS LEU VAL SEQRES 21 B 329 ASN GLY ARG TYR ALA ASP TYR LYS HIS VAL ALA THR PHE SEQRES 22 B 329 ILE GLY PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL SEQRES 23 B 329 ALA VAL THR ILE ASP GLU PRO THR ALA ASN GLY TYR TYR SEQRES 24 B 329 SER GLY VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET SEQRES 25 B 329 GLY GLY SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS SEQRES 26 B 329 PRO LEU THR ALA HET PO4 B 601 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *107(H2 O) HELIX 1 AA1 ASP A 240 HIS A 258 1 19 HELIX 2 AA2 ASN A 299 ASP A 304 1 6 HELIX 3 AA3 PRO A 308 MET A 312 5 5 HELIX 4 AA4 LYS A 313 ALA A 323 1 11 HELIX 5 AA5 VAL A 355 LYS A 361 1 7 HELIX 6 AA6 SER A 363 ALA A 372 1 10 HELIX 7 AA7 GLY A 375 LEU A 386 1 12 HELIX 8 AA8 ASN A 406 TRP A 410 5 5 HELIX 9 AA9 ARG A 411 PHE A 420 1 10 HELIX 10 AB1 SER A 427 TYR A 435 1 9 HELIX 11 AB2 TYR A 435 HIS A 440 1 6 HELIX 12 AB3 LYS A 463 SER A 476 1 14 HELIX 13 AB4 GLY A 484 ALA A 488 5 5 HELIX 14 AB5 TYR A 544 ALA A 549 1 6 HELIX 15 AB6 ALA A 549 LEU A 564 1 16 HELIX 16 AB7 ASP B 240 HIS B 258 1 19 HELIX 17 AB8 ASN B 299 ASP B 304 1 6 HELIX 18 AB9 PRO B 308 MET B 312 5 5 HELIX 19 AC1 LYS B 313 ALA B 323 1 11 HELIX 20 AC2 VAL B 355 SER B 362 1 8 HELIX 21 AC3 SER B 363 ALA B 372 1 10 HELIX 22 AC4 GLY B 375 LEU B 386 1 12 HELIX 23 AC5 ASN B 406 TRP B 410 5 5 HELIX 24 AC6 ARG B 411 PHE B 420 1 10 HELIX 25 AC7 SER B 427 HIS B 440 1 14 HELIX 26 AC8 LYS B 463 SER B 476 1 14 HELIX 27 AC9 GLY B 484 ALA B 488 5 5 HELIX 28 AD1 TYR B 544 LEU B 564 1 21 SHEET 1 AA1 5 ILE A 275 ASN A 280 0 SHEET 2 AA1 5 ALA A 262 ASP A 269 -1 N VAL A 267 O ALA A 277 SHEET 3 AA1 5 VAL A 529 ASP A 536 -1 O ALA A 532 N VAL A 266 SHEET 4 AA1 5 LYS A 513 ALA A 522 -1 N GLY A 520 O VAL A 531 SHEET 5 AA1 5 GLY A 495 LYS A 503 -1 N ALA A 501 O VAL A 515 SHEET 1 AA2 2 ARG A 331 ASN A 333 0 SHEET 2 AA2 2 SER A 352 ASP A 354 -1 O LEU A 353 N LEU A 332 SHEET 1 AA3 2 TYR A 337 ILE A 339 0 SHEET 2 AA3 2 SER A 342 VAL A 344 -1 O VAL A 344 N TYR A 337 SHEET 1 AA4 2 VAL A 443 LEU A 444 0 SHEET 2 AA4 2 LYS A 459 ARG A 460 -1 O LYS A 459 N LEU A 444 SHEET 1 AA5 5 ILE B 275 ASN B 280 0 SHEET 2 AA5 5 ALA B 262 ASP B 269 -1 N VAL B 267 O ALA B 277 SHEET 3 AA5 5 VAL B 529 ASP B 536 -1 O ALA B 532 N VAL B 266 SHEET 4 AA5 5 ASP B 511 ALA B 522 -1 N PHE B 518 O VAL B 533 SHEET 5 AA5 5 GLY B 495 VAL B 505 -1 N ALA B 501 O VAL B 515 SHEET 1 AA6 2 ARG B 331 ASN B 333 0 SHEET 2 AA6 2 SER B 352 ASP B 354 -1 O LEU B 353 N LEU B 332 SHEET 1 AA7 2 TYR B 337 ILE B 339 0 SHEET 2 AA7 2 SER B 342 VAL B 344 -1 O VAL B 344 N TYR B 337 SHEET 1 AA8 2 VAL B 443 LEU B 444 0 SHEET 2 AA8 2 LYS B 459 ARG B 460 -1 O LYS B 459 N LEU B 444 CISPEP 1 ALA A 522 PRO A 523 0 -14.42 CISPEP 2 ALA B 522 PRO B 523 0 -9.37 CRYST1 44.556 76.839 87.478 90.00 92.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022444 0.000000 0.000929 0.00000 SCALE2 0.000000 0.013014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011441 0.00000 CONECT 4906 4907 4908 4909 4910 CONECT 4907 4906 CONECT 4908 4906 CONECT 4909 4906 CONECT 4910 4906 MASTER 356 0 1 28 22 0 0 6 4994 2 5 52 END