HEADER DNA BINDING PROTEIN 03-NOV-25 9Z1B TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE CCGCGCAGGC, CRYSTAL SOAKED IN ALTERNATE TITLE 3 SOLVENT PRIOR TO DIFFRACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9Z1B 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 10987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5800 - 7.7500 0.82 1083 124 0.2403 0.2936 REMARK 3 2 7.7500 - 6.1600 0.97 1247 140 0.3039 0.3293 REMARK 3 3 6.1500 - 5.3800 0.98 1269 150 0.2662 0.3097 REMARK 3 4 5.3800 - 4.8900 0.98 1262 125 0.2762 0.2719 REMARK 3 5 4.8900 - 4.5400 0.98 1242 145 0.2785 0.2804 REMARK 3 6 4.5400 - 4.2700 0.97 1261 133 0.2900 0.3372 REMARK 3 7 4.2700 - 4.0600 0.98 1255 148 0.3036 0.3284 REMARK 3 8 4.0600 - 3.8800 0.99 1257 146 0.3454 0.3631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.474 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.831 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 121.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 200.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3087 REMARK 3 ANGLE : 0.621 4411 REMARK 3 CHIRALITY : 0.061 491 REMARK 3 PLANARITY : 0.006 362 REMARK 3 DIHEDRAL : 25.644 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0773 -28.5978 60.9259 REMARK 3 T TENSOR REMARK 3 T11: 3.6430 T22: 1.1746 REMARK 3 T33: 1.5860 T12: -0.0079 REMARK 3 T13: -0.7368 T23: 0.2326 REMARK 3 L TENSOR REMARK 3 L11: 5.1147 L22: 2.4259 REMARK 3 L33: 2.4796 L12: -2.5101 REMARK 3 L13: 1.7260 L23: -2.1513 REMARK 3 S TENSOR REMARK 3 S11: 0.2662 S12: -0.6344 S13: -1.3739 REMARK 3 S21: 0.3716 S22: 0.2979 S23: 0.5691 REMARK 3 S31: 1.9064 S32: 0.3498 S33: -0.7996 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1576 -8.9125 39.9755 REMARK 3 T TENSOR REMARK 3 T11: 3.3696 T22: 2.2597 REMARK 3 T33: 1.6331 T12: -0.7364 REMARK 3 T13: -1.7371 T23: 0.7257 REMARK 3 L TENSOR REMARK 3 L11: 2.2828 L22: 0.5595 REMARK 3 L33: 3.4652 L12: -1.1604 REMARK 3 L13: 2.8005 L23: -1.2964 REMARK 3 S TENSOR REMARK 3 S11: 0.2774 S12: 1.8659 S13: 0.3393 REMARK 3 S21: -1.1523 S22: 0.0148 S23: 0.2330 REMARK 3 S31: 0.2369 S32: 0.7227 S33: 0.0907 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4860 17.8561 21.8915 REMARK 3 T TENSOR REMARK 3 T11: 4.7201 T22: 3.0247 REMARK 3 T33: 2.8511 T12: 0.5427 REMARK 3 T13: -1.1723 T23: 2.5168 REMARK 3 L TENSOR REMARK 3 L11: 0.4395 L22: 0.0529 REMARK 3 L33: 0.0867 L12: 0.1803 REMARK 3 L13: 0.2553 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: -0.2480 S13: -0.0739 REMARK 3 S21: 0.4921 S22: 0.0779 S23: 0.0544 REMARK 3 S31: 0.5765 S32: 1.0367 S33: -0.0899 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7937 21.7864 17.0634 REMARK 3 T TENSOR REMARK 3 T11: 3.8089 T22: 3.0391 REMARK 3 T33: 2.5054 T12: 0.4756 REMARK 3 T13: -0.8159 T23: 1.2370 REMARK 3 L TENSOR REMARK 3 L11: 1.9077 L22: 6.6570 REMARK 3 L33: 4.1869 L12: 3.2945 REMARK 3 L13: -0.9580 L23: -3.8200 REMARK 3 S TENSOR REMARK 3 S11: -0.9312 S12: -1.1226 S13: -0.8124 REMARK 3 S21: 1.6106 S22: 1.6365 S23: 0.7222 REMARK 3 S31: 0.6539 S32: 0.6845 S33: -0.1286 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6045 -15.5865 48.1944 REMARK 3 T TENSOR REMARK 3 T11: 3.9585 T22: 1.4317 REMARK 3 T33: 1.6917 T12: 0.1002 REMARK 3 T13: -0.7137 T23: 0.1669 REMARK 3 L TENSOR REMARK 3 L11: 5.9133 L22: 1.2949 REMARK 3 L33: 2.7337 L12: -1.6359 REMARK 3 L13: 1.6771 L23: -1.4087 REMARK 3 S TENSOR REMARK 3 S11: 1.0754 S12: 1.2909 S13: -0.6639 REMARK 3 S21: -1.9286 S22: -0.3796 S23: 1.0497 REMARK 3 S31: 0.7360 S32: 0.2093 S33: -0.8120 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7413 4.0305 58.4411 REMARK 3 T TENSOR REMARK 3 T11: 2.6157 T22: 0.6472 REMARK 3 T33: 1.3761 T12: 0.0378 REMARK 3 T13: -0.4762 T23: 0.5207 REMARK 3 L TENSOR REMARK 3 L11: 3.3075 L22: 8.5614 REMARK 3 L33: 2.0664 L12: -0.3855 REMARK 3 L13: 0.0046 L23: -4.2231 REMARK 3 S TENSOR REMARK 3 S11: -0.5658 S12: -0.3532 S13: 0.8963 REMARK 3 S21: 1.4252 S22: 0.6826 S23: -0.1252 REMARK 3 S31: -1.1543 S32: 0.4423 S33: 0.6273 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2101 7.8354 47.7522 REMARK 3 T TENSOR REMARK 3 T11: 2.4358 T22: 1.2363 REMARK 3 T33: 1.4487 T12: 0.2160 REMARK 3 T13: 0.0877 T23: 0.6367 REMARK 3 L TENSOR REMARK 3 L11: 5.2466 L22: 0.7626 REMARK 3 L33: 5.7521 L12: -1.8948 REMARK 3 L13: -3.5593 L23: 1.8087 REMARK 3 S TENSOR REMARK 3 S11: -0.7722 S12: 0.6882 S13: 0.5552 REMARK 3 S21: -1.2704 S22: 0.5058 S23: -0.9569 REMARK 3 S31: 2.0486 S32: -0.2701 S33: 0.0870 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6534 -1.3640 48.9790 REMARK 3 T TENSOR REMARK 3 T11: 2.4780 T22: -0.2757 REMARK 3 T33: 1.5016 T12: -0.6979 REMARK 3 T13: -0.4495 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.6978 L22: 6.8843 REMARK 3 L33: 0.7443 L12: 1.2158 REMARK 3 L13: -0.3172 L23: 1.2211 REMARK 3 S TENSOR REMARK 3 S11: -0.3214 S12: 0.0138 S13: -0.8620 REMARK 3 S21: -0.1340 S22: 0.0721 S23: 0.0769 REMARK 3 S31: -0.0186 S32: -0.0088 S33: 0.5165 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6125 1.2434 71.8850 REMARK 3 T TENSOR REMARK 3 T11: 1.9451 T22: 1.6008 REMARK 3 T33: 1.4963 T12: 0.3095 REMARK 3 T13: -0.4435 T23: 0.2864 REMARK 3 L TENSOR REMARK 3 L11: 3.8027 L22: 5.3652 REMARK 3 L33: 4.0855 L12: -4.5211 REMARK 3 L13: 2.5070 L23: -3.0811 REMARK 3 S TENSOR REMARK 3 S11: -1.6868 S12: -2.4358 S13: -0.4762 REMARK 3 S21: 0.8917 S22: 1.0288 S23: -0.4146 REMARK 3 S31: -0.8892 S32: -0.4533 S33: 0.4710 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9327 7.2172 53.9158 REMARK 3 T TENSOR REMARK 3 T11: 3.0417 T22: 1.5674 REMARK 3 T33: 1.9432 T12: -0.3931 REMARK 3 T13: -0.5663 T23: 0.3499 REMARK 3 L TENSOR REMARK 3 L11: 4.1672 L22: 1.9227 REMARK 3 L33: 2.7504 L12: 2.3440 REMARK 3 L13: 2.9782 L23: 2.3005 REMARK 3 S TENSOR REMARK 3 S11: -0.9300 S12: 0.1319 S13: 2.1499 REMARK 3 S21: -0.5062 S22: -0.3106 S23: 1.4626 REMARK 3 S31: 1.5477 S32: 0.0800 S33: 0.8447 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 126 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0968 10.2552 62.4751 REMARK 3 T TENSOR REMARK 3 T11: 2.8305 T22: 0.4588 REMARK 3 T33: 1.7852 T12: 0.4113 REMARK 3 T13: -0.4259 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.9130 L22: 2.7519 REMARK 3 L33: 2.6372 L12: 0.8580 REMARK 3 L13: 0.5652 L23: 1.9965 REMARK 3 S TENSOR REMARK 3 S11: -0.2258 S12: 0.3197 S13: 1.7157 REMARK 3 S21: -0.4889 S22: -0.3567 S23: 0.7766 REMARK 3 S31: 0.2753 S32: -0.0386 S33: 0.5847 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 141 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2826 -0.1602 58.2106 REMARK 3 T TENSOR REMARK 3 T11: 2.6913 T22: 0.4744 REMARK 3 T33: 1.2624 T12: -0.1702 REMARK 3 T13: -1.0425 T23: 0.6692 REMARK 3 L TENSOR REMARK 3 L11: 4.1193 L22: 4.8813 REMARK 3 L33: 4.5066 L12: -1.8814 REMARK 3 L13: 2.2865 L23: -4.4944 REMARK 3 S TENSOR REMARK 3 S11: -0.4285 S12: -0.1309 S13: 0.8064 REMARK 3 S21: 0.9457 S22: -0.5705 S23: -0.6636 REMARK 3 S31: -0.7330 S32: 0.3253 S33: 0.3636 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 173 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0016 -11.7760 65.4298 REMARK 3 T TENSOR REMARK 3 T11: 3.4172 T22: 1.2124 REMARK 3 T33: 0.4816 T12: -0.3739 REMARK 3 T13: -0.8571 T23: 0.9186 REMARK 3 L TENSOR REMARK 3 L11: 1.1435 L22: 0.8112 REMARK 3 L33: 2.8806 L12: -0.2898 REMARK 3 L13: 0.6118 L23: -0.1642 REMARK 3 S TENSOR REMARK 3 S11: -0.2666 S12: -0.8099 S13: -0.1178 REMARK 3 S21: -0.3680 S22: 0.1221 S23: -0.3496 REMARK 3 S31: -0.6763 S32: -0.2244 S33: 0.1258 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1824 -11.7574 60.2350 REMARK 3 T TENSOR REMARK 3 T11: 3.6940 T22: 1.1181 REMARK 3 T33: 0.5533 T12: -0.2710 REMARK 3 T13: -0.2742 T23: 0.4723 REMARK 3 L TENSOR REMARK 3 L11: 3.9691 L22: 0.5852 REMARK 3 L33: 5.3794 L12: -1.3057 REMARK 3 L13: 2.6300 L23: -1.5443 REMARK 3 S TENSOR REMARK 3 S11: -0.5998 S12: 0.9476 S13: -0.0285 REMARK 3 S21: -0.1572 S22: 1.0948 S23: -0.0719 REMARK 3 S31: -0.3495 S32: 1.3172 S33: 0.5766 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Z1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000299447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22544 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MAGNESIUM ACETATE, 1.6M LITHIUM REMARK 280 SULFATE, 50MM MES PH 6.5. THE CRYSTAL WAS CROSSLINKED WITH 40 MG/ REMARK 280 ML EDC OVERNIGHT, AND THEN LOOPED INTO A SOLUTION OF 50MM REMARK 280 POTASSIUM CHLORIDE, 4MM CALCIUM CHLORIDE, 10% GLYCEROL, AND 10MM REMARK 280 TRIS HYDROCHLORIDE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.22811 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.08150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.85328 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.22811 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.08150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 67.85328 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 ASP C 57 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 19 CG1 CG2 REMARK 470 LEU C 41 CG CD1 CD2 REMARK 470 VAL C 43 CG1 CG2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 ASP C 50 CG OD1 OD2 REMARK 470 ILE C 59 CG1 CG2 CD1 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 ILE C 70 CG1 CG2 CD1 REMARK 470 LEU C 73 CG CD1 CD2 REMARK 470 THR C 74 OG1 CG2 REMARK 470 LYS C 87 CD CE NZ REMARK 470 VAL C 95 CG1 CG2 REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE C 116 CG1 CG2 CD1 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 HIS C 120 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 126 CG CD1 CD2 REMARK 470 SER C 128 OG REMARK 470 HIS C 130 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 135 CG CD1 CD2 REMARK 470 ILE C 136 CG1 CG2 CD1 REMARK 470 ILE C 140 CG1 CG2 CD1 REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 146 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 148 CG CD OE1 NE2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ILE C 185 CG1 CG2 CD1 REMARK 470 GLU C 190 CG CD OE1 OE2 REMARK 470 ARG C 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 245 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 49 -128.91 -162.12 REMARK 500 ILE C 59 112.11 -164.52 REMARK 500 ARG C 145 75.51 -114.51 REMARK 500 PHE C 208 -66.71 -106.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 DA A 7 N7 78.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 13 O4 REMARK 620 2 DC B 30 N4 148.6 REMARK 620 3 DA B 31 N6 76.4 135.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 82.2 REMARK 620 N 1 DBREF 9Z1B A 1 31 PDB 9Z1B 9Z1B 1 31 DBREF 9Z1B B 12 42 PDB 9Z1B 9Z1B 12 42 DBREF 9Z1B C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9Z1B MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9Z1B ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9Z1B GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9Z1B SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9Z1B HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9Z1B GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9Z1B SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9Z1B PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DC DC DG DC DG SEQRES 3 A 31 DC DA DG DG DC SEQRES 1 B 31 DG DG DC DC DT DG DC DG DC DG DG DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET CA A 101 1 HET K A 102 1 HET MG A 103 1 HET MG A 104 1 HET CA B 101 1 HET K B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HET MG C 301 1 HET K C 302 1 HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION FORMUL 4 CA 2(CA 2+) FORMUL 5 K 3(K 1+) FORMUL 6 MG 6(MG 2+) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 CYS C 60 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 VAL C 129 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N SER C 123 O LEU C 126 SHEET 1 AA3 2 GLU C 93 VAL C 95 0 SHEET 2 AA3 2 SER C 111 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK O4' DG A 6 MG MG A 103 1555 1555 2.62 LINK N7 DG A 6 MG MG A 104 1555 1555 2.96 LINK N7 DA A 7 MG MG A 104 1555 1555 2.58 LINK O4 DT A 13 MG MG B 105 1555 1555 2.13 LINK O6 DG B 22 K K B 102 1555 1555 3.38 LINK N4 DC B 30 MG MG B 105 1555 1555 2.35 LINK N6 DA B 31 MG MG B 105 1555 1555 2.58 LINK O4' DT B 34 MG MG B 103 1555 1555 2.89 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.20 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.69 CRYST1 72.979 126.163 135.730 90.00 91.07 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013703 0.000000 0.000255 0.00000 SCALE2 0.000000 0.007926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007369 0.00000 CONECT 104 2900 CONECT 111 2901 CONECT 133 2901 CONECT 259 2906 CONECT 851 2903 CONECT 1021 2906 CONECT 1040 2906 CONECT 1092 2904 CONECT 1669 2907 CONECT 1696 2907 CONECT 2900 104 CONECT 2901 111 133 CONECT 2903 851 CONECT 2904 1092 CONECT 2906 259 1021 1040 CONECT 2907 1669 1696 MASTER 580 0 11 12 10 0 0 6 2905 3 16 27 END