HEADER HYDROLASE 05-NOV-25 9Z2I TITLE CRYSTAL STRUCTURE OF THE POLY(HEXAMETHYLENE ADIPAMIDE) (NYLON66) TITLE 2 HYDROLASE NYL50 IN ITS APO FORM AT ROOM TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(HEXAMETHYLENE ADIPAMIDE) HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.117; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALPHAPROTEOBACTERIA BACTERIUM; SOURCE 3 ORGANISM_TAXID: 1913988; SOURCE 4 GENE: EPN97_01225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NYLON HYDROLASE, NTN-HYDROLASE, NYLON-66, APOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CAPRA,F.MEILLEUR REVDAT 2 26-NOV-25 9Z2I 1 REMARK REVDAT 1 19-NOV-25 9Z2I 0 JRNL AUTH N.CAPRA,F.MEILLEUR JRNL TITL CRYSTAL STRUCTURE OF THE POLY(HEXAMETHYLENE ADIPAMIDE) JRNL TITL 2 (NYLON66) HYDROLASE NYL50 AT ROOM TEMPERATURE IN THE APO JRNL TITL 3 FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.E.DRUFVA,J.F.CAHILL,P.M.B.SAINT-VINCENT,A.N.WILLIAMS, REMARK 1 AUTH 2 V.BOCHAROVA,N.CAPRA,F.MEILLEUR,D.L.CARPER,C.BOURGERY, REMARK 1 AUTH 3 K.MIYAZAKI,M.YONEMURA,Y.SHIRAISHI,J.M.PARKS,M.ZHOU, REMARK 1 AUTH 4 I.T.DISHNER,J.C.FOSTER,S.J.KOEHLER,H.R.VALENTINO,A.SEDOVA, REMARK 1 AUTH 5 V.KERTESZ,D.P.VASILEVA,L.H.HOCHANADEL,C.A.FIGG,S.NEGORO, REMARK 1 AUTH 6 D.I.KATO,S.H.CHEN,J.K.MICHENER REMARK 1 TITL IDENTIFICATION AND CHARACTERIZATION OF SUBSTRATE- AND REMARK 1 TITL 2 PRODUCT-SELECTIVE NYLON HYDROLASES. REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 39605696 REMARK 1 DOI 10.1016/J.CHECAT.2025.101418 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 26208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4431 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4314 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6012 ; 2.046 ; 1.796 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9891 ; 0.673 ; 1.734 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 6.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;12.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;14.172 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5328 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 964 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2427 ; 2.775 ; 1.514 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2427 ; 2.772 ; 1.514 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3030 ; 3.901 ; 2.699 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3031 ; 3.900 ; 2.700 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 5.546 ; 2.200 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2005 ; 5.545 ; 2.202 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2980 ; 8.075 ; 3.687 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18437 ;10.170 ;18.780 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 18375 ;10.163 ;18.720 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9Z2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000301765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SMALL, ROD-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE/POTASSIUM PHOSPHATE DIBASIC PH 6.9, PH 7.4, REMARK 280 MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.19900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.30900 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.19900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.30900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 MET A 225 REMARK 465 ASN A 226 REMARK 465 MET B 225 REMARK 465 ASN B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 29 CD GLU A 29 OE1 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 19 CG - SD - CE ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 256 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 19 65.45 68.62 REMARK 500 MET A 19 64.77 69.46 REMARK 500 SER A 68 -147.76 50.25 REMARK 500 LEU A 167 -164.39 -107.32 REMARK 500 ASP A 205 85.41 68.86 REMARK 500 MET B 19 63.39 69.31 REMARK 500 MET B 19 62.63 69.97 REMARK 500 SER B 68 -146.28 49.34 REMARK 500 LEU B 167 -169.38 -106.59 REMARK 500 ASP B 205 88.71 72.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 17 0.08 SIDE CHAIN REMARK 500 ARG A 123 0.28 SIDE CHAIN REMARK 500 ARG A 153 0.25 SIDE CHAIN REMARK 500 ARG B 137 0.10 SIDE CHAIN REMARK 500 ARG B 191 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 18 O REMARK 620 2 MET A 19 O 71.3 REMARK 620 3 ASP A 106 O 155.3 95.9 REMARK 620 4 VAL A 109 O 85.8 111.7 79.4 REMARK 620 5 HOH A 552 O 122.1 100.8 80.3 143.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 18 O REMARK 620 2 MET B 19 O 71.7 REMARK 620 3 ASP B 106 O 157.3 96.3 REMARK 620 4 VAL B 109 O 86.7 111.5 79.9 REMARK 620 5 HOH B 568 O 119.1 97.5 80.8 146.6 REMARK 620 N 1 2 3 4 DBREF 9Z2I A 1 305 PDB 9Z2I 9Z2I 1 305 DBREF 9Z2I B 1 305 PDB 9Z2I 9Z2I 1 305 SEQRES 1 A 305 MET LEU THR ASP ILE ASP GLY ILE ARG VAL GLY HIS ALA SEQRES 2 A 305 THR ASP ALA ARG ALA MET THR GLY CYS THR ILE ALA VAL SEQRES 3 A 305 PHE ASP GLU PRO VAL VAL PRO GLY VAL ASP VAL ARG GLY SEQRES 4 A 305 ALA ASN ALA ALA THR ILE TYR THR ASP LEU LEU TYR PRO SEQRES 5 A 305 ASP SER VAL MET PRO SER VAL THR GLY ILE MET LEU THR SEQRES 6 A 305 GLY GLY SER ALA PHE GLY LEU GLU ALA ALA LEU GLY ALA SEQRES 7 A 305 VAL ARG TYR PHE GLU GLU GLN GLY ARG GLY TYR ASP VAL SEQRES 8 A 305 GLY VAL ALA LYS ILE PRO LEU VAL PRO ALA ALA VAL ILE SEQRES 9 A 305 TYR ASP LEU SER VAL GLY ASP ALA ASN VAL ARG PRO ASP SEQRES 10 A 305 LEU ALA MET GLY ARG ARG ALA CYS GLU ALA ALA LYS PRO SEQRES 11 A 305 GLY PRO PHE GLU ARG GLY ARG VAL GLY GLY GLY THR GLY SEQRES 12 A 305 ALA THR VAL GLY LYS LEU TYR GLY VAL ARG GLN SER SER SEQRES 13 A 305 PRO GLY GLY LEU GLY THR ALA THR VAL SER LEU TYR GLY SEQRES 14 A 305 GLY ILE LYS VAL SER ALA MET ILE VAL VAL ASN SER PHE SEQRES 15 A 305 GLY ASP LEU ARG ASP THR ALA GLY ARG ILE VAL ALA GLY SEQRES 16 A 305 ALA LYS TYR GLU GLY GLY GLU PHE ALA ASP THR TYR ALA SEQRES 17 A 305 ARG MET LYS LEU GLY ASP LYS ASN GLN SER ALA LEU ALA SEQRES 18 A 305 ARG MET GLY MET ASN THR THR ILE GLY ILE VAL SER THR SEQRES 19 A 305 ASN CYS ARG LEU THR LYS VAL GLU ALA SER ARG MET ALA SEQRES 20 A 305 THR LEU ALA HIS ASN GLY LEU ALA ARG ALA ILE CYS PRO SEQRES 21 A 305 ILE HIS THR ASN VAL ASP GLY ASP THR ILE PHE ALA THR SEQRES 22 A 305 GLY LEU GLN LYS SER ASP LEU THR ALA PRO VAL ASP LEU SEQRES 23 A 305 LEU GLY THR ALA ALA ALA GLU ALA ALA MET LEU ALA CYS SEQRES 24 A 305 LEU ASP ALA VAL MET GLN SEQRES 1 B 305 MET LEU THR ASP ILE ASP GLY ILE ARG VAL GLY HIS ALA SEQRES 2 B 305 THR ASP ALA ARG ALA MET THR GLY CYS THR ILE ALA VAL SEQRES 3 B 305 PHE ASP GLU PRO VAL VAL PRO GLY VAL ASP VAL ARG GLY SEQRES 4 B 305 ALA ASN ALA ALA THR ILE TYR THR ASP LEU LEU TYR PRO SEQRES 5 B 305 ASP SER VAL MET PRO SER VAL THR GLY ILE MET LEU THR SEQRES 6 B 305 GLY GLY SER ALA PHE GLY LEU GLU ALA ALA LEU GLY ALA SEQRES 7 B 305 VAL ARG TYR PHE GLU GLU GLN GLY ARG GLY TYR ASP VAL SEQRES 8 B 305 GLY VAL ALA LYS ILE PRO LEU VAL PRO ALA ALA VAL ILE SEQRES 9 B 305 TYR ASP LEU SER VAL GLY ASP ALA ASN VAL ARG PRO ASP SEQRES 10 B 305 LEU ALA MET GLY ARG ARG ALA CYS GLU ALA ALA LYS PRO SEQRES 11 B 305 GLY PRO PHE GLU ARG GLY ARG VAL GLY GLY GLY THR GLY SEQRES 12 B 305 ALA THR VAL GLY LYS LEU TYR GLY VAL ARG GLN SER SER SEQRES 13 B 305 PRO GLY GLY LEU GLY THR ALA THR VAL SER LEU TYR GLY SEQRES 14 B 305 GLY ILE LYS VAL SER ALA MET ILE VAL VAL ASN SER PHE SEQRES 15 B 305 GLY ASP LEU ARG ASP THR ALA GLY ARG ILE VAL ALA GLY SEQRES 16 B 305 ALA LYS TYR GLU GLY GLY GLU PHE ALA ASP THR TYR ALA SEQRES 17 B 305 ARG MET LYS LEU GLY ASP LYS ASN GLN SER ALA LEU ALA SEQRES 18 B 305 ARG MET GLY MET ASN THR THR ILE GLY ILE VAL SER THR SEQRES 19 B 305 ASN CYS ARG LEU THR LYS VAL GLU ALA SER ARG MET ALA SEQRES 20 B 305 THR LEU ALA HIS ASN GLY LEU ALA ARG ALA ILE CYS PRO SEQRES 21 B 305 ILE HIS THR ASN VAL ASP GLY ASP THR ILE PHE ALA THR SEQRES 22 B 305 GLY LEU GLN LYS SER ASP LEU THR ALA PRO VAL ASP LEU SEQRES 23 B 305 LEU GLY THR ALA ALA ALA GLU ALA ALA MET LEU ALA CYS SEQRES 24 B 305 LEU ASP ALA VAL MET GLN HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *172(H2 O) HELIX 1 AA1 MET A 1 ILE A 5 5 5 HELIX 2 AA2 TYR A 46 TYR A 51 5 6 HELIX 3 AA3 GLY A 67 GLY A 71 5 5 HELIX 4 AA4 LEU A 72 GLN A 85 1 14 HELIX 5 AA5 ASP A 117 ALA A 127 1 11 HELIX 6 AA6 VAL A 138 THR A 142 5 5 HELIX 7 AA7 GLY A 151 SER A 155 5 5 HELIX 8 AA8 ASP A 205 GLY A 213 1 9 HELIX 9 AA9 THR A 239 ALA A 257 1 19 HELIX 10 AB1 PRO A 283 MET A 304 1 22 HELIX 11 AB2 MET B 1 ILE B 5 5 5 HELIX 12 AB3 TYR B 46 TYR B 51 5 6 HELIX 13 AB4 GLY B 67 GLY B 71 5 5 HELIX 14 AB5 LEU B 72 GLN B 85 1 14 HELIX 15 AB6 ASP B 117 ALA B 127 1 11 HELIX 16 AB7 VAL B 138 THR B 142 5 5 HELIX 17 AB8 GLY B 151 SER B 155 5 5 HELIX 18 AB9 ASP B 205 LEU B 212 1 8 HELIX 19 AC1 THR B 239 ALA B 257 1 19 HELIX 20 AC2 PRO B 283 GLN B 305 1 23 SHEET 1 AA1 5 ILE A 8 ASP A 15 0 SHEET 2 AA1 5 THR A 20 PHE A 27 -1 O VAL A 26 N ARG A 9 SHEET 3 AA1 5 GLY A 61 THR A 65 -1 O ILE A 62 N ALA A 25 SHEET 4 AA1 5 ALA A 101 VAL A 103 1 O ALA A 102 N THR A 65 SHEET 5 AA1 5 THR A 44 ILE A 45 -1 N ILE A 45 O ALA A 101 SHEET 1 AA2 5 VAL A 31 VAL A 37 0 SHEET 2 AA2 5 THR A 269 LEU A 275 -1 O GLY A 274 N VAL A 32 SHEET 3 AA2 5 THR A 228 ARG A 237 1 N GLY A 230 O PHE A 271 SHEET 4 AA2 5 LYS A 172 VAL A 179 -1 N SER A 174 O SER A 233 SHEET 5 AA2 5 GLY A 159 SER A 166 -1 N VAL A 165 O VAL A 173 SHEET 1 AA3 2 TYR A 89 ASP A 90 0 SHEET 2 AA3 2 LYS A 95 ILE A 96 -1 O ILE A 96 N TYR A 89 SHEET 1 AA4 2 THR A 145 VAL A 146 0 SHEET 2 AA4 2 SER A 156 PRO A 157 -1 O SER A 156 N VAL A 146 SHEET 1 AA5 3 ILE A 192 ALA A 194 0 SHEET 2 AA5 3 ASP A 184 ARG A 186 -1 N LEU A 185 O ALA A 194 SHEET 3 AA5 3 ILE A 258 CYS A 259 -1 O CYS A 259 N ASP A 184 SHEET 1 AA6 5 ILE B 8 ASP B 15 0 SHEET 2 AA6 5 THR B 20 PHE B 27 -1 O VAL B 26 N ARG B 9 SHEET 3 AA6 5 GLY B 61 THR B 65 -1 O ILE B 62 N ALA B 25 SHEET 4 AA6 5 ALA B 101 VAL B 103 1 O ALA B 102 N THR B 65 SHEET 5 AA6 5 THR B 44 ILE B 45 -1 N ILE B 45 O ALA B 101 SHEET 1 AA7 5 VAL B 31 VAL B 37 0 SHEET 2 AA7 5 THR B 269 LEU B 275 -1 O GLY B 274 N VAL B 32 SHEET 3 AA7 5 THR B 228 ARG B 237 1 N GLY B 230 O PHE B 271 SHEET 4 AA7 5 LYS B 172 VAL B 179 -1 N SER B 174 O SER B 233 SHEET 5 AA7 5 GLY B 159 SER B 166 -1 N VAL B 165 O VAL B 173 SHEET 1 AA8 2 TYR B 89 ASP B 90 0 SHEET 2 AA8 2 LYS B 95 ILE B 96 -1 O ILE B 96 N TYR B 89 SHEET 1 AA9 2 THR B 145 VAL B 146 0 SHEET 2 AA9 2 SER B 156 PRO B 157 -1 O SER B 156 N VAL B 146 SHEET 1 AB1 3 ILE B 192 ALA B 194 0 SHEET 2 AB1 3 ASP B 184 ARG B 186 -1 N LEU B 185 O ALA B 194 SHEET 3 AB1 3 ILE B 258 CYS B 259 -1 O CYS B 259 N ASP B 184 LINK O ALA A 18 NA NA A 401 1555 1555 2.85 LINK O MET A 19 NA NA A 401 1555 1555 2.76 LINK O ASP A 106 NA NA A 401 1555 1555 2.76 LINK O VAL A 109 NA NA A 401 1555 1555 2.65 LINK NA NA A 401 O HOH A 552 1555 1555 3.03 LINK O ALA B 18 NA NA B 401 1555 1555 2.82 LINK O MET B 19 NA NA B 401 1555 1555 2.80 LINK O ASP B 106 NA NA B 401 1555 1555 2.78 LINK O VAL B 109 NA NA B 401 1555 1555 2.55 LINK NA NA B 401 O HOH B 568 1555 1555 2.82 CISPEP 1 CYS A 259 PRO A 260 0 -14.02 CISPEP 2 CYS B 259 PRO B 260 0 -13.00 CRYST1 53.755 96.398 104.618 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009559 0.00000 CONECT 131 4372 CONECT 137 4372 CONECT 778 4372 CONECT 800 4372 CONECT 2320 4373 CONECT 2326 4373 CONECT 2961 4373 CONECT 2983 4373 CONECT 4372 131 137 778 800 CONECT 4372 4425 CONECT 4373 2320 2326 2961 2983 CONECT 4373 4524 CONECT 4425 4372 CONECT 4524 4373 MASTER 389 0 2 20 34 0 0 6 4522 2 14 48 END