HEADER TRANSFERASE 03-JAN-26 9ZX4 TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ATP OR ADP, MG, AND THE TRINUCLEOTIDE SUBSTRATE UCA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(UPCPA)-3'); COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZX4 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0400 - 4.8500 1.00 3058 144 0.1712 0.2231 REMARK 3 2 4.8500 - 3.8500 1.00 2953 139 0.1646 0.2186 REMARK 3 3 3.8500 - 3.3600 1.00 2898 145 0.1961 0.2484 REMARK 3 4 3.3600 - 3.0600 1.00 2914 140 0.2118 0.3086 REMARK 3 5 3.0600 - 2.8400 1.00 2845 171 0.2448 0.2847 REMARK 3 6 2.8400 - 2.6700 1.00 2866 164 0.2690 0.3370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.357 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4243 REMARK 3 ANGLE : 0.473 5814 REMARK 3 CHIRALITY : 0.041 613 REMARK 3 PLANARITY : 0.004 677 REMARK 3 DIHEDRAL : 13.690 1596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.3346 -24.1925 -25.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.4345 T22: 0.4979 REMARK 3 T33: 0.5258 T12: -0.0046 REMARK 3 T13: 0.0030 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.6816 L22: 1.4477 REMARK 3 L33: 1.4274 L12: -1.2087 REMARK 3 L13: -1.1090 L23: 0.2534 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: 0.0009 S13: -0.2417 REMARK 3 S21: -0.0519 S22: 0.0648 S23: 0.0968 REMARK 3 S31: -0.0245 S32: -0.1452 S33: 0.0336 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 34.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.14300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 UCA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.26650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.51750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.81450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.26650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.51750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.81450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.26650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.51750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.81450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.26650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.51750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.81450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 434 REMARK 465 THR A 435 REMARK 465 GLU A 589 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 GLU B 589 REMARK 465 LYS B 590 REMARK 465 ILE B 591 REMARK 465 GLU B 592 REMARK 465 ARG B 593 REMARK 465 ILE B 594 REMARK 465 GLU B 595 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 LYS C 433 REMARK 465 GLU C 589 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 465 GLU C 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 479 -106.37 55.71 REMARK 500 TYR A 488 32.82 -92.19 REMARK 500 ASP A 514 73.54 -104.80 REMARK 500 ASP A 543 72.22 -103.26 REMARK 500 LYS B 507 63.33 61.42 REMARK 500 ASP B 514 66.79 -107.18 REMARK 500 ASP B 543 56.09 -101.63 REMARK 500 GLN C 483 71.23 -107.53 REMARK 500 ASP C 514 71.62 -101.97 REMARK 500 LYS C 534 63.74 37.86 REMARK 500 ASP C 543 70.01 -112.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ATP A2002 O2B 91.0 REMARK 620 3 ATP A2002 O2G 179.2 89.8 REMARK 620 4 HOH A2105 O 90.7 90.0 89.7 REMARK 620 5 HOH A2111 O 89.3 89.9 90.4 179.9 REMARK 620 6 HOH A2112 O 89.4 179.7 89.9 89.9 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ATP B2002 O2G 178.9 REMARK 620 3 ATP B2002 O2B 90.4 90.3 REMARK 620 4 HOH B2106 O 91.2 89.7 89.9 REMARK 620 5 HOH B2115 O 88.5 90.6 89.5 179.4 REMARK 620 6 HOH B2116 O 89.5 89.8 179.6 89.6 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ATP C2002 O2B 89.7 REMARK 620 3 ATP C2002 O2B 90.3 1.7 REMARK 620 4 ATP C2002 O2G 178.2 89.2 88.7 REMARK 620 5 HOH C2109 O 179.7 90.3 89.7 2.1 REMARK 620 6 HOH C2112 O 89.6 92.0 90.4 91.9 90.0 REMARK 620 7 HOH C2123 O 90.4 87.7 89.3 88.0 89.9 179.7 REMARK 620 8 HOH C2132 O 89.6 177.9 179.6 91.4 90.4 90.0 90.3 REMARK 620 N 1 2 3 4 5 6 7 DBREF 9ZX4 A 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX4 B 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX4 C 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX4 D 1 3 PDB 9ZX4 9ZX4 1 3 DBREF 9ZX4 E 1 3 PDB 9ZX4 9ZX4 1 3 DBREF 9ZX4 F 1 3 PDB 9ZX4 9ZX4 1 3 SEQADV 9ZX4 GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX4 LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 B 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 C 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 D 3 U C A SEQRES 1 E 3 U C A SEQRES 1 F 3 U C A HET MG A2001 1 HET ATP A2002 31 HET MG B2001 1 HET ATP B2002 31 HET SO4 B2003 5 HET SO4 B2004 5 HET MG C2001 1 HET ATP C2002 41 HET SO4 C2003 5 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 7 MG 3(MG 2+) FORMUL 8 ATP 3(C10 H16 N5 O13 P3) FORMUL 11 SO4 3(O4 S 2-) FORMUL 16 HOH *107(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 TYR A 488 LYS A 506 1 19 HELIX 4 AA4 GLN A 519 GLU A 522 5 4 HELIX 5 AA5 MET A 523 HIS A 533 1 11 HELIX 6 AA6 LYS A 549 ASN A 557 1 9 HELIX 7 AA7 SER A 562 HIS A 572 1 11 HELIX 8 AA8 SER A 578 SER A 585 1 8 HELIX 9 AA9 GLY B 452 ASN B 464 1 13 HELIX 10 AB1 SER B 471 TYR B 475 5 5 HELIX 11 AB2 ASP B 485 LYS B 487 5 3 HELIX 12 AB3 TYR B 488 LYS B 506 1 19 HELIX 13 AB4 GLN B 519 GLU B 522 5 4 HELIX 14 AB5 MET B 523 HIS B 533 1 11 HELIX 15 AB6 LYS B 549 ASN B 557 1 9 HELIX 16 AB7 SER B 562 HIS B 572 1 11 HELIX 17 AB8 SER B 578 SER B 585 1 8 HELIX 18 AB9 GLY C 452 ASN C 464 1 13 HELIX 19 AC1 SER C 471 TYR C 475 5 5 HELIX 20 AC2 ASP C 485 LYS C 487 5 3 HELIX 21 AC3 TYR C 488 GLU C 505 1 18 HELIX 22 AC4 GLN C 519 GLU C 522 5 4 HELIX 23 AC5 MET C 523 HIS C 533 1 11 HELIX 24 AC6 LYS C 549 ASN C 557 1 9 HELIX 25 AC7 SER C 562 HIS C 572 1 11 HELIX 26 AC8 SER C 578 SER C 585 1 8 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 513 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 513 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LEU B 538 N LEU B 444 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 O GLN B 481 N ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 513 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LYS C 536 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.04 LINK MG MG A2001 O2B ATP A2002 1555 1555 2.17 LINK MG MG A2001 O2G ATP A2002 1555 1555 1.90 LINK MG MG A2001 O HOH A2105 1555 1555 2.14 LINK MG MG A2001 O HOH A2111 1555 1555 2.15 LINK MG MG A2001 O HOH A2112 1555 1555 2.09 LINK OG SER B 454 MG MG B2001 1555 1555 2.04 LINK MG MG B2001 O2G ATP B2002 1555 1555 1.99 LINK MG MG B2001 O2B ATP B2002 1555 1555 2.12 LINK MG MG B2001 O HOH B2106 1555 1555 2.11 LINK MG MG B2001 O HOH B2115 1555 1555 2.07 LINK MG MG B2001 O HOH B2116 1555 1555 2.13 LINK OG SER C 454 MG MG C2001 1555 1555 2.05 LINK MG MG C2001 O2BAATP C2002 1555 1555 2.08 LINK MG MG C2001 O2BBATP C2002 1555 1555 2.08 LINK MG MG C2001 O2GAATP C2002 1555 1555 1.96 LINK MG MG C2001 O BHOH C2109 1555 1555 2.05 LINK MG MG C2001 O HOH C2112 1555 1555 2.11 LINK MG MG C2001 O HOH C2123 1555 1555 2.08 LINK MG MG C2001 O HOH C2132 1555 1555 2.23 CISPEP 1 SER A 509 PRO A 510 0 -0.72 CISPEP 2 SER B 509 PRO B 510 0 -2.84 CISPEP 3 SER C 509 PRO C 510 0 -1.36 CRYST1 104.533 107.035 113.629 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008801 0.00000 CONECT 134 3989 CONECT 1398 4021 CONECT 2678 4063 CONECT 3989 134 3992 3996 4114 CONECT 3989 4120 4121 CONECT 3990 3991 3992 3993 3997 CONECT 3991 3990 CONECT 3992 3989 3990 CONECT 3993 3990 CONECT 3994 3995 3996 3997 4001 CONECT 3995 3994 CONECT 3996 3989 3994 CONECT 3997 3990 3994 CONECT 3998 3999 4000 4001 4002 CONECT 3999 3998 CONECT 4000 3998 CONECT 4001 3994 3998 CONECT 4002 3998 4003 CONECT 4003 4002 4004 CONECT 4004 4003 4005 4006 CONECT 4005 4004 4010 CONECT 4006 4004 4007 4008 CONECT 4007 4006 CONECT 4008 4006 4009 4010 CONECT 4009 4008 CONECT 4010 4005 4008 4011 CONECT 4011 4010 4012 4020 CONECT 4012 4011 4013 CONECT 4013 4012 4014 CONECT 4014 4013 4015 4020 CONECT 4015 4014 4016 4017 CONECT 4016 4015 CONECT 4017 4015 4018 CONECT 4018 4017 4019 CONECT 4019 4018 4020 CONECT 4020 4011 4014 4019 CONECT 4021 1398 4024 4028 4142 CONECT 4021 4151 4152 CONECT 4022 4023 4024 4025 4029 CONECT 4023 4022 CONECT 4024 4021 4022 CONECT 4025 4022 CONECT 4026 4027 4028 4029 4033 CONECT 4027 4026 CONECT 4028 4021 4026 CONECT 4029 4022 4026 CONECT 4030 4031 4032 4033 4034 CONECT 4031 4030 CONECT 4032 4030 CONECT 4033 4026 4030 CONECT 4034 4030 4035 CONECT 4035 4034 4036 CONECT 4036 4035 4037 4038 CONECT 4037 4036 4042 CONECT 4038 4036 4039 4040 CONECT 4039 4038 CONECT 4040 4038 4041 4042 CONECT 4041 4040 CONECT 4042 4037 4040 4043 CONECT 4043 4042 4044 4052 CONECT 4044 4043 4045 CONECT 4045 4044 4046 CONECT 4046 4045 4047 4052 CONECT 4047 4046 4048 4049 CONECT 4048 4047 CONECT 4049 4047 4050 CONECT 4050 4049 4051 CONECT 4051 4050 4052 CONECT 4052 4043 4046 4051 CONECT 4053 4054 4055 4056 4057 CONECT 4054 4053 CONECT 4055 4053 CONECT 4056 4053 CONECT 4057 4053 CONECT 4058 4059 4060 4061 4062 CONECT 4059 4058 CONECT 4060 4058 CONECT 4061 4058 CONECT 4062 4058 CONECT 4063 2678 4066 4072 4073 CONECT 4063 4170 4173 4184 4193 CONECT 4064 4065 4066 4067 4074 CONECT 4065 4064 CONECT 4066 4063 4064 CONECT 4067 4064 CONECT 4068 4070 4072 4074 4082 CONECT 4069 4071 4073 4075 4083 CONECT 4070 4068 CONECT 4071 4069 CONECT 4072 4063 4068 CONECT 4073 4063 4069 CONECT 4074 4064 4068 CONECT 4075 4069 CONECT 4076 4078 4080 4082 4084 CONECT 4077 4079 4081 4083 4085 CONECT 4078 4076 CONECT 4079 4077 CONECT 4080 4076 CONECT 4081 4077 CONECT 4082 4068 4076 CONECT 4083 4069 4077 CONECT 4084 4076 4086 CONECT 4085 4077 4087 CONECT 4086 4084 4088 CONECT 4087 4085 4088 CONECT 4088 4086 4087 4089 4090 CONECT 4089 4088 4094 CONECT 4090 4088 4091 4092 CONECT 4091 4090 CONECT 4092 4090 4093 4094 CONECT 4093 4092 CONECT 4094 4089 4092 4095 CONECT 4095 4094 4096 4104 CONECT 4096 4095 4097 CONECT 4097 4096 4098 CONECT 4098 4097 4099 4104 CONECT 4099 4098 4100 4101 CONECT 4100 4099 CONECT 4101 4099 4102 CONECT 4102 4101 4103 CONECT 4103 4102 4104 CONECT 4104 4095 4098 4103 CONECT 4105 4106 4107 4108 4109 CONECT 4106 4105 CONECT 4107 4105 CONECT 4108 4105 CONECT 4109 4105 CONECT 4114 3989 CONECT 4120 3989 CONECT 4121 3989 CONECT 4142 4021 CONECT 4151 4021 CONECT 4152 4021 CONECT 4170 4063 CONECT 4173 4063 CONECT 4184 4063 CONECT 4193 4063 MASTER 407 0 9 26 18 0 0 6 4200 6 137 45 END