HEADER TRANSFERASE 03-JAN-26 9ZX6 TITLE CRYSTAL STRUCTURE OF THE N4BP2 POLYNUCLEOTIDE KINASE DOMAIN COMPLEXED TITLE 2 WITH ATP, MG, AND THE TRINUCLEOTIDE SUBSTRATE UUA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: N4BP2,BCL-3-BINDING PROTEIN; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NEDD4-BINDING PROTEIN 2-LIKE 2; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-OH RNA (5'-R(UPUPA)-3'); COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N4BP2, B3BP, KIAA1413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE; POLYNUCLEOTIDE KINASE; CATALYSIS; ENZYME REACTION; KEYWDS 2 CATALYTIC MECHANISM; PHOSPHORYL TRANSFER, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,R.E.STANLEY REVDAT 1 23-SEP-26 9ZX6 0 JRNL AUTH H.WANG,R.E.STANLEY JRNL TITL STRUCTURE, SPECIFICITY, AND CATALYTIC MECHANISM OF THE JRNL TITL 2 POLYNUCLEOTIDE KINASE DOMAINS FROM THE HUMAN N4BP2 KINASE JRNL TITL 3 FAMILY JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8500 - 5.0500 1.00 2639 125 0.1857 0.2404 REMARK 3 2 5.0500 - 4.0100 1.00 2473 167 0.1702 0.2023 REMARK 3 3 4.0100 - 3.5000 1.00 2485 148 0.1917 0.2378 REMARK 3 4 3.5000 - 3.1800 1.00 2515 95 0.2465 0.2750 REMARK 3 5 3.1800 - 2.9600 1.00 2445 170 0.2416 0.3085 REMARK 3 6 2.9600 - 2.7800 1.00 2451 142 0.2790 0.2986 REMARK 3 7 2.7800 - 2.6400 1.00 2437 133 0.2884 0.3295 REMARK 3 8 2.6400 - 2.5300 1.00 2461 134 0.3011 0.3117 REMARK 3 9 2.5300 - 2.4300 0.99 2429 142 0.3374 0.3972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.317 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4227 REMARK 3 ANGLE : 0.618 5790 REMARK 3 CHIRALITY : 0.042 612 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 19.373 1594 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.0951 -23.8402 -25.1778 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.3461 REMARK 3 T33: 0.3466 T12: -0.0053 REMARK 3 T13: -0.0040 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.5585 L22: 1.5158 REMARK 3 L33: 1.0503 L12: -0.9692 REMARK 3 L13: -0.5849 L23: 0.0254 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0229 S13: -0.1412 REMARK 3 S21: -0.0294 S22: 0.0416 S23: 0.0674 REMARK 3 S31: 0.0027 S32: -0.1333 S33: 0.0278 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ZX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000303781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920105 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 32.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 20% PEG 3350, REMARK 280 0.2 M AMMONIUM SULFATE, 0.1 M MES/IMIDAZOLE (PH 6.0), 100 MM MG2+ REMARK 280 , 2 MM ATP, 10% ISOPROPANOL, AND 5% PEG 400, AND WERE SOAKED FOR REMARK 280 16 H IN THE SAME SOLUTION SUPPLEMENTED WITH 5 MM ATP AND 1 MM REMARK 280 UUA., VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.84250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.78900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.26250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.84250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.78900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.26250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.84250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.78900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.26250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.84250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.78900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.26250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 MET A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 ASP A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 422 REMARK 465 ASP A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 GLN A 429 REMARK 465 VAL A 430 REMARK 465 VAL A 431 REMARK 465 ARG A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 434 REMARK 465 THR A 435 REMARK 465 GLU A 589 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 GLU A 592 REMARK 465 ARG A 593 REMARK 465 ILE A 594 REMARK 465 GLU A 595 REMARK 465 GLY B 414 REMARK 465 SER B 415 REMARK 465 HIS B 416 REMARK 465 MET B 417 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 ASP B 420 REMARK 465 TYR B 421 REMARK 465 LYS B 422 REMARK 465 ASP B 423 REMARK 465 ASP B 424 REMARK 465 ASP B 425 REMARK 465 ASP B 426 REMARK 465 LYS B 427 REMARK 465 SER B 428 REMARK 465 GLN B 429 REMARK 465 VAL B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 THR B 435 REMARK 465 GLU B 589 REMARK 465 LYS B 590 REMARK 465 ILE B 591 REMARK 465 GLU B 592 REMARK 465 ARG B 593 REMARK 465 ILE B 594 REMARK 465 GLU B 595 REMARK 465 GLY C 414 REMARK 465 SER C 415 REMARK 465 HIS C 416 REMARK 465 MET C 417 REMARK 465 ALA C 418 REMARK 465 THR C 419 REMARK 465 ASP C 420 REMARK 465 TYR C 421 REMARK 465 LYS C 422 REMARK 465 ASP C 423 REMARK 465 ASP C 424 REMARK 465 ASP C 425 REMARK 465 ASP C 426 REMARK 465 LYS C 427 REMARK 465 SER C 428 REMARK 465 GLN C 429 REMARK 465 VAL C 430 REMARK 465 VAL C 431 REMARK 465 ARG C 432 REMARK 465 LYS C 433 REMARK 465 GLU C 589 REMARK 465 LYS C 590 REMARK 465 ILE C 591 REMARK 465 GLU C 592 REMARK 465 ARG C 593 REMARK 465 ILE C 594 REMARK 465 GLU C 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 479 -110.17 59.92 REMARK 500 ASP A 514 69.05 -101.84 REMARK 500 ASP A 543 67.54 -101.13 REMARK 500 ASP B 514 64.74 -104.62 REMARK 500 ASP B 543 50.98 -99.14 REMARK 500 GLN C 483 65.36 -106.76 REMARK 500 ASP C 514 66.35 -102.04 REMARK 500 ASP C 543 63.04 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 454 OG REMARK 620 2 ATP A2002 O2B 89.7 REMARK 620 3 ATP A2002 O2G 178.1 88.5 REMARK 620 4 HOH A2110 O 92.2 90.6 88.5 REMARK 620 5 HOH A2113 O 89.1 89.5 90.2 178.7 REMARK 620 6 HOH A2119 O 89.2 178.1 92.5 91.1 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 454 OG REMARK 620 2 ATP B2002 O2G 179.4 REMARK 620 3 ATP B2002 O2B 89.7 90.2 REMARK 620 4 HOH B2108 O 90.4 90.2 89.7 REMARK 620 5 HOH B2115 O 88.2 91.2 89.1 178.1 REMARK 620 6 HOH B2120 O 89.6 90.4 178.7 89.1 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 454 OG REMARK 620 2 ATP C2002 O2G 178.5 REMARK 620 3 ATP C2002 O2B 88.3 92.6 REMARK 620 4 HOH C2107 O 89.3 91.9 88.0 REMARK 620 5 HOH C2118 O 90.5 88.3 90.4 178.4 REMARK 620 6 HOH C2126 O 90.4 88.7 178.7 91.9 89.7 REMARK 620 N 1 2 3 4 5 DBREF 9ZX6 A 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX6 B 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX6 C 428 595 UNP Q86UW6 N4BP2_HUMAN 428 595 DBREF 9ZX6 D 1 3 PDB 9ZX6 9ZX6 1 3 DBREF 9ZX6 E 1 3 PDB 9ZX6 9ZX6 1 3 DBREF 9ZX6 F 1 3 PDB 9ZX6 9ZX6 1 3 SEQADV 9ZX6 GLY A 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 SER A 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 HIS A 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 MET A 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ALA A 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 THR A 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP A 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 TYR A 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS A 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP A 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP A 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP A 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP A 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS A 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 GLY B 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 SER B 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 HIS B 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 MET B 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ALA B 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 THR B 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP B 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 TYR B 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS B 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP B 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP B 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP B 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP B 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS B 427 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 GLY C 414 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 SER C 415 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 HIS C 416 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 MET C 417 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ALA C 418 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 THR C 419 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP C 420 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 TYR C 421 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS C 422 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP C 423 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP C 424 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP C 425 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 ASP C 426 UNP Q86UW6 EXPRESSION TAG SEQADV 9ZX6 LYS C 427 UNP Q86UW6 EXPRESSION TAG SEQRES 1 A 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 A 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 A 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 A 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 A 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 A 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 A 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 A 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 A 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 A 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 A 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 A 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 A 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 A 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 B 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 B 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 B 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 B 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 B 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 B 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 B 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 B 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 B 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 B 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 B 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 B 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 B 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 B 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 C 182 GLY SER HIS MET ALA THR ASP TYR LYS ASP ASP ASP ASP SEQRES 2 C 182 LYS SER GLN VAL VAL ARG LYS LYS THR SER TYR VAL GLY SEQRES 3 C 182 LEU VAL LEU VAL LEU LEU ARG GLY LEU PRO GLY SER GLY SEQRES 4 C 182 LYS SER PHE LEU ALA ARG THR LEU GLN GLU ASP ASN PRO SEQRES 5 C 182 SER GLY VAL ILE LEU SER THR ASP ASP TYR PHE TYR ILE SEQRES 6 C 182 ASN GLY GLN TYR GLN PHE ASP VAL LYS TYR LEU GLY GLU SEQRES 7 C 182 ALA HIS GLU TRP ASN GLN ASN ARG ALA LYS GLU ALA PHE SEQRES 8 C 182 GLU LYS LYS ILE SER PRO ILE ILE ILE ASP ASN THR ASN SEQRES 9 C 182 LEU GLN ALA TRP GLU MET LYS PRO TYR VAL ALA LEU SER SEQRES 10 C 182 GLN LYS HIS LYS TYR LYS VAL LEU PHE ARG GLU PRO ASP SEQRES 11 C 182 THR TRP TRP LYS PHE LYS PRO LYS GLU LEU ALA ARG ARG SEQRES 12 C 182 ASN ILE HIS GLY VAL SER LYS GLU LYS ILE THR ARG MET SEQRES 13 C 182 LEU GLU HIS TYR GLN ARG PHE VAL SER VAL PRO ILE ILE SEQRES 14 C 182 MET SER SER SER VAL PRO GLU LYS ILE GLU ARG ILE GLU SEQRES 1 D 3 U U A SEQRES 1 E 3 U U A SEQRES 1 F 3 U U A HET MG A2001 1 HET ATP A2002 39 HET MG B2001 1 HET ATP B2002 39 HET SO4 B2003 5 HET SO4 B2004 5 HET MG C2001 1 HET ATP C2002 39 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 7 MG 3(MG 2+) FORMUL 8 ATP 3(C10 H16 N5 O13 P3) FORMUL 11 SO4 2(O4 S 2-) FORMUL 15 HOH *111(H2 O) HELIX 1 AA1 GLY A 452 ASN A 464 1 13 HELIX 2 AA2 SER A 471 TYR A 475 5 5 HELIX 3 AA3 ASP A 485 LYS A 487 5 3 HELIX 4 AA4 TYR A 488 LYS A 506 1 19 HELIX 5 AA5 GLN A 519 GLU A 522 5 4 HELIX 6 AA6 MET A 523 HIS A 533 1 11 HELIX 7 AA7 LYS A 549 ASN A 557 1 9 HELIX 8 AA8 SER A 562 HIS A 572 1 11 HELIX 9 AA9 SER A 578 SER A 585 1 8 HELIX 10 AB1 GLY B 452 ASN B 464 1 13 HELIX 11 AB2 SER B 471 TYR B 475 5 5 HELIX 12 AB3 ASP B 485 LYS B 487 5 3 HELIX 13 AB4 TYR B 488 LYS B 506 1 19 HELIX 14 AB5 GLN B 519 HIS B 533 1 15 HELIX 15 AB6 LYS B 549 ASN B 557 1 9 HELIX 16 AB7 SER B 562 HIS B 572 1 11 HELIX 17 AB8 SER B 578 SER B 585 1 8 HELIX 18 AB9 GLY C 452 ASN C 464 1 13 HELIX 19 AC1 SER C 471 TYR C 475 5 5 HELIX 20 AC2 ASP C 485 LYS C 487 5 3 HELIX 21 AC3 TYR C 488 LYS C 507 1 20 HELIX 22 AC4 GLN C 519 GLU C 522 5 4 HELIX 23 AC5 MET C 523 HIS C 533 1 11 HELIX 24 AC6 LYS C 549 ASN C 557 1 9 HELIX 25 AC7 SER C 562 HIS C 572 1 11 HELIX 26 AC8 SER C 578 SER C 584 1 7 SHEET 1 AA1 4 VAL A 468 LEU A 470 0 SHEET 2 AA1 4 ILE A 511 ILE A 513 1 O ILE A 512 N LEU A 470 SHEET 3 AA1 4 VAL A 441 LEU A 445 1 N VAL A 443 O ILE A 511 SHEET 4 AA1 4 LYS A 536 ARG A 540 1 O LYS A 536 N LEU A 442 SHEET 1 AA2 2 TYR A 477 ILE A 478 0 SHEET 2 AA2 2 GLN A 481 TYR A 482 -1 O GLN A 481 N ILE A 478 SHEET 1 AA3 4 VAL B 468 LEU B 470 0 SHEET 2 AA3 4 ILE B 511 ILE B 513 1 O ILE B 512 N LEU B 470 SHEET 3 AA3 4 VAL B 441 LEU B 445 1 N VAL B 443 O ILE B 511 SHEET 4 AA3 4 LYS B 536 ARG B 540 1 O LYS B 536 N LEU B 442 SHEET 1 AA4 2 TYR B 477 ILE B 478 0 SHEET 2 AA4 2 GLN B 481 TYR B 482 -1 O GLN B 481 N ILE B 478 SHEET 1 AA5 4 VAL C 468 LEU C 470 0 SHEET 2 AA5 4 ILE C 511 ILE C 513 1 O ILE C 512 N LEU C 470 SHEET 3 AA5 4 VAL C 441 LEU C 445 1 N VAL C 443 O ILE C 511 SHEET 4 AA5 4 LYS C 536 ARG C 540 1 O LYS C 536 N LEU C 442 SHEET 1 AA6 2 TYR C 477 ILE C 478 0 SHEET 2 AA6 2 GLN C 481 TYR C 482 -1 O GLN C 481 N ILE C 478 LINK OG SER A 454 MG MG A2001 1555 1555 2.03 LINK MG MG A2001 O2B ATP A2002 1555 1555 2.09 LINK MG MG A2001 O2G ATP A2002 1555 1555 2.08 LINK MG MG A2001 O HOH A2110 1555 1555 2.18 LINK MG MG A2001 O HOH A2113 1555 1555 2.15 LINK MG MG A2001 O HOH A2119 1555 1555 2.07 LINK OG SER B 454 MG MG B2001 1555 1555 2.06 LINK MG MG B2001 O2G ATP B2002 1555 1555 2.03 LINK MG MG B2001 O2B ATP B2002 1555 1555 2.06 LINK MG MG B2001 O HOH B2108 1555 1555 2.10 LINK MG MG B2001 O HOH B2115 1555 1555 2.13 LINK MG MG B2001 O HOH B2120 1555 1555 2.06 LINK OG SER C 454 MG MG C2001 1555 1555 2.10 LINK MG MG C2001 O2G ATP C2002 1555 1555 2.03 LINK MG MG C2001 O2B ATP C2002 1555 1555 2.17 LINK MG MG C2001 O HOH C2107 1555 1555 2.05 LINK MG MG C2001 O HOH C2118 1555 1555 2.00 LINK MG MG C2001 O HOH C2126 1555 1555 2.19 CISPEP 1 SER A 509 PRO A 510 0 0.60 CISPEP 2 SER B 509 PRO B 510 0 -5.22 CISPEP 3 SER C 509 PRO C 510 0 -4.74 CRYST1 103.685 105.578 112.525 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008887 0.00000 CONECT 279 7915 CONECT 2812 7955 CONECT 5381 8005 CONECT 7915 279 7918 7922 8054 CONECT 7915 8057 8063 CONECT 7916 7917 7918 7919 7923 CONECT 7917 7916 CONECT 7918 7915 7916 CONECT 7919 7916 CONECT 7920 7921 7922 7923 7927 CONECT 7921 7920 CONECT 7922 7915 7920 CONECT 7923 7916 7920 CONECT 7924 7925 7926 7927 7928 CONECT 7925 7924 CONECT 7926 7924 CONECT 7927 7920 7924 CONECT 7928 7924 7929 CONECT 7929 7928 7930 7947 7948 CONECT 7930 7929 7931 7932 7949 CONECT 7931 7930 7936 CONECT 7932 7930 7933 7934 7950 CONECT 7933 7932 7951 CONECT 7934 7932 7935 7936 7952 CONECT 7935 7934 7953 CONECT 7936 7931 7934 7937 7954 CONECT 7937 7936 7938 7946 CONECT 7938 7937 7939 CONECT 7939 7938 7940 CONECT 7940 7939 7941 7946 CONECT 7941 7940 7942 7943 CONECT 7942 7941 CONECT 7943 7941 7944 CONECT 7944 7943 7945 CONECT 7945 7944 7946 CONECT 7946 7937 7940 7945 CONECT 7947 7929 CONECT 7948 7929 CONECT 7949 7930 CONECT 7950 7932 CONECT 7951 7933 CONECT 7952 7934 CONECT 7953 7935 CONECT 7954 7936 CONECT 7955 2812 7958 7962 8085 CONECT 7955 8092 8097 CONECT 7956 7957 7958 7959 7963 CONECT 7957 7956 CONECT 7958 7955 7956 CONECT 7959 7956 CONECT 7960 7961 7962 7963 7967 CONECT 7961 7960 CONECT 7962 7955 7960 CONECT 7963 7956 7960 CONECT 7964 7965 7966 7967 7968 CONECT 7965 7964 CONECT 7966 7964 CONECT 7967 7960 7964 CONECT 7968 7964 7969 CONECT 7969 7968 7970 7987 7988 CONECT 7970 7969 7971 7972 7989 CONECT 7971 7970 7976 CONECT 7972 7970 7973 7974 7990 CONECT 7973 7972 7991 CONECT 7974 7972 7975 7976 7992 CONECT 7975 7974 7993 CONECT 7976 7971 7974 7977 7994 CONECT 7977 7976 7978 7986 CONECT 7978 7977 7979 CONECT 7979 7978 7980 CONECT 7980 7979 7981 7986 CONECT 7981 7980 7982 7983 CONECT 7982 7981 CONECT 7983 7981 7984 CONECT 7984 7983 7985 CONECT 7985 7984 7986 CONECT 7986 7977 7980 7985 CONECT 7987 7969 CONECT 7988 7969 CONECT 7989 7970 CONECT 7990 7972 CONECT 7991 7973 CONECT 7992 7974 CONECT 7993 7975 CONECT 7994 7976 CONECT 7995 7996 7997 7998 7999 CONECT 7996 7995 CONECT 7997 7995 CONECT 7998 7995 CONECT 7999 7995 CONECT 8000 8001 8002 8003 8004 CONECT 8001 8000 CONECT 8002 8000 CONECT 8003 8000 CONECT 8004 8000 CONECT 8005 5381 8008 8012 8112 CONECT 8005 8123 8131 CONECT 8006 8007 8008 8009 8013 CONECT 8007 8006 CONECT 8008 8005 8006 CONECT 8009 8006 CONECT 8010 8011 8012 8013 8017 CONECT 8011 8010 CONECT 8012 8005 8010 CONECT 8013 8006 8010 CONECT 8014 8015 8016 8017 8018 CONECT 8015 8014 CONECT 8016 8014 CONECT 8017 8010 8014 CONECT 8018 8014 8019 CONECT 8019 8018 8020 8037 8038 CONECT 8020 8019 8021 8022 8039 CONECT 8021 8020 8026 CONECT 8022 8020 8023 8024 8040 CONECT 8023 8022 8041 CONECT 8024 8022 8025 8026 8042 CONECT 8025 8024 8043 CONECT 8026 8021 8024 8027 8044 CONECT 8027 8026 8028 8036 CONECT 8028 8027 8029 CONECT 8029 8028 8030 CONECT 8030 8029 8031 8036 CONECT 8031 8030 8032 8033 CONECT 8032 8031 CONECT 8033 8031 8034 CONECT 8034 8033 8035 CONECT 8035 8034 8036 CONECT 8036 8027 8030 8035 CONECT 8037 8019 CONECT 8038 8019 CONECT 8039 8020 CONECT 8040 8022 CONECT 8041 8023 CONECT 8042 8024 CONECT 8043 8025 CONECT 8044 8026 CONECT 8054 7915 CONECT 8057 7915 CONECT 8063 7915 CONECT 8085 7955 CONECT 8092 7955 CONECT 8097 7955 CONECT 8112 8005 CONECT 8123 8005 CONECT 8131 8005 MASTER 412 0 8 26 18 0 0 6 4199 6 145 45 END