data_6Y9
# 
_chem_comp.id                                    6Y9 
_chem_comp.name                                  "(2~{R})-1,2-dimethylpyrrolidine-2-carboxylic acid" 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H13 N O2" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-22 
_chem_comp.pdbx_modified_date                    2016-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        143.184 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6Y9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KX5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6Y9 CD  C1  C 0 1 N N N 3.182 38.741 18.121 -1.959 -0.400 0.755  CD  6Y9 1  
6Y9 CG  C2  C 0 1 N N N 2.591 38.491 16.750 -1.317 -1.764 0.399  CG  6Y9 2  
6Y9 CA  C3  C 0 1 N N R 2.632 40.881 17.305 0.075  0.032  -0.438 CA  6Y9 3  
6Y9 C37 C4  C 0 1 N N N 4.305 40.631 19.221 -1.440 1.866  0.048  C37 6Y9 4  
6Y9 CB  C5  C 0 1 N N N 2.013 39.856 16.336 -0.418 -1.383 -0.806 CB  6Y9 5  
6Y9 C   C6  C 0 1 N N N 3.253 42.114 16.484 1.445  -0.046 0.186  C   6Y9 6  
6Y9 O   O7  O 0 1 N N N 4.448 42.382 16.585 2.174  -0.975 -0.071 O   6Y9 7  
6Y9 N   N6  N 0 1 N N N 3.687 40.108 18.006 -0.887 0.594  0.531  N   6Y9 8  
6Y9 C38 C38 C 0 1 N N N 1.566 41.540 18.192 0.124  0.909  -1.691 C38 6Y9 9  
6Y9 HD2 H1  H 0 1 N N N 2.413 38.666 18.904 -2.807 -0.198 0.101  HD2 6Y9 10 
6Y9 HD3 H2  H 0 1 N N N 3.996 38.034 18.337 -2.274 -0.390 1.798  HD3 6Y9 11 
6Y9 HG2 H3  H 0 1 N N N 1.798 37.730 16.799 -0.719 -2.142 1.228  HG2 6Y9 12 
6Y9 HG3 H4  H 0 1 N N N 3.368 38.165 16.043 -2.077 -2.489 0.107  HG3 6Y9 13 
6Y9 H5  H5  H 0 1 N N N 5.057 39.917 19.587 -1.953 1.702  -0.900 H5  6Y9 14 
6Y9 H6  H6  H 0 1 N N N 4.790 41.594 19.001 -2.145 2.258  0.780  H6  6Y9 15 
6Y9 H7  H7  H 0 1 N N N 3.533 40.777 19.991 -0.631 2.582  -0.096 H7  6Y9 16 
6Y9 HB2 H8  H 0 1 N N N 2.292 40.092 15.298 0.421  -2.073 -0.895 HB2 6Y9 17 
6Y9 HB3 H9  H 0 1 N N N 0.917 39.853 16.430 -0.999 -1.361 -1.728 HB3 6Y9 18 
6Y9 H57 H57 H 0 1 N N N 2.046 42.263 18.868 0.461  1.910  -1.421 H57 6Y9 19 
6Y9 H58 H58 H 0 1 N N N 0.833 42.061 17.559 0.817  0.474  -2.411 H58 6Y9 20 
6Y9 H59 H59 H 0 1 N N N 1.054 40.768 18.785 -0.871 0.967  -2.132 H59 6Y9 21 
6Y9 OXT OXT O 0 1 N Y N 2.399 42.780 15.694 1.855  0.916  1.028  OXT 6Y9 22 
6Y9 HXT HXT H 0 1 N Y N 2.863 43.474 15.240 2.741  0.822  1.404  HXT 6Y9 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6Y9 CB  CG  SING N N 1  
6Y9 CB  CA  SING N N 2  
6Y9 C   O   DOUB N N 3  
6Y9 C   CA  SING N N 4  
6Y9 CG  CD  SING N N 5  
6Y9 CA  N   SING N N 6  
6Y9 CA  C38 SING N N 7  
6Y9 N   CD  SING N N 8  
6Y9 N   C37 SING N N 9  
6Y9 CD  HD2 SING N N 10 
6Y9 CD  HD3 SING N N 11 
6Y9 CG  HG2 SING N N 12 
6Y9 CG  HG3 SING N N 13 
6Y9 C37 H5  SING N N 14 
6Y9 C37 H6  SING N N 15 
6Y9 C37 H7  SING N N 16 
6Y9 CB  HB2 SING N N 17 
6Y9 CB  HB3 SING N N 18 
6Y9 C38 H57 SING N N 19 
6Y9 C38 H58 SING N N 20 
6Y9 C38 H59 SING N N 21 
6Y9 C   OXT SING N N 22 
6Y9 OXT HXT SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6Y9 InChI            InChI                1.03  "InChI=1S/C7H13NO2/c1-7(6(9)10)4-3-5-8(7)2/h3-5H2,1-2H3,(H,9,10)/t7-/m1/s1" 
6Y9 InChIKey         InChI                1.03  BWNGEDLBTNTBMD-SSDOTTSWSA-N                                                 
6Y9 SMILES_CANONICAL CACTVS               3.385 "CN1CCC[C@]1(C)C(O)=O"                                                      
6Y9 SMILES           CACTVS               3.385 "CN1CCC[C]1(C)C(O)=O"                                                       
6Y9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[C@@]1(CCCN1C)C(=O)O"                                                     
6Y9 SMILES           "OpenEye OEToolkits" 2.0.5 "CC1(CCCN1C)C(=O)O"                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6Y9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(2~{R})-1,2-dimethylpyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6Y9 "Create component" 2016-07-22 RCSB 
6Y9 "Initial release"  2016-12-28 RCSB 
# 
