data_A1A2J
# 
_chem_comp.id                                    A1A2J 
_chem_comp.name                                  "(2S,4S)-4-amino-1-benzoylpyrrolidine-2-carbaldehyde" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H14 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-18 
_chem_comp.pdbx_modified_date                    2024-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        234.251 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1A2J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GCG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1A2J C    C1  C 0 1 N N N N Y Y 1.980  5.730 -2.222 -2.499 -1.271 -0.399 C    A1A2J 1  
A1A2J C51  C2  C 0 1 N N S N Y N 2.438  7.151 -1.649 -1.974 -0.260 0.588  C51  A1A2J 2  
A1A2J C52  C3  C 0 1 N N N N Y N 4.013  7.021 -1.567 -2.750 1.066  0.445  C52  A1A2J 3  
A1A2J CA   C4  C 0 1 N N S N Y N 4.235  7.862 -0.092 -1.645 2.138  0.642  CA   A1A2J 4  
A1A2J C54  C5  C 0 1 N N N N N N 2.852  7.434 0.586  -0.427 1.457  -0.032 C54  A1A2J 5  
A1A2J C56  C6  C 0 1 N N N N N N 0.766  7.515 -0.350 0.447  -0.867 0.345  C56  A1A2J 6  
A1A2J C58  C7  C 0 1 Y N N N N N 0.081  7.729 0.977  1.839  -0.424 0.114  C58  A1A2J 7  
A1A2J C59  C8  C 0 1 Y N N N N N -0.885 8.873 1.170  2.902  -1.134 0.673  C59  A1A2J 8  
A1A2J C60  C9  C 0 1 Y N N N N N -1.559 9.036 2.510  4.198  -0.715 0.454  C60  A1A2J 9  
A1A2J C61  C10 C 0 1 Y N N N N N -1.278 8.050 3.615  4.445  0.406  -0.318 C61  A1A2J 10 
A1A2J C62  C11 C 0 1 Y N N N N N -0.315 6.914 3.418  3.395  1.115  -0.875 C62  A1A2J 11 
A1A2J C63  C12 C 0 1 Y N N N N N 0.359  6.736 2.079  2.095  0.703  -0.669 C63  A1A2J 12 
A1A2J N55  N1  N 0 1 N N N N N N 2.209  7.323 -0.466 -0.560 0.028  0.304  N55  A1A2J 13 
A1A2J N    N2  N 0 1 N N N Y Y N 5.222  7.494 0.616  -1.996 3.388  -0.045 N    A1A2J 14 
A1A2J O    O1  O 0 1 N N N N Y Y 1.504  4.874 -1.543 -1.905 -1.473 -1.431 O    A1A2J 15 
A1A2J O57  O2  O 0 1 N N N N N N 0.048  7.464 -1.313 0.212  -2.038 0.571  O57  A1A2J 16 
A1A2J OXT  OXT O 0 1 N Y N N Y Y 2.108  5.536 -3.277 -3.625 -1.951 -0.128 OXT  A1A2J 17 
A1A2J H511 H2  H 0 0 N N N N Y N 2.150  7.956 -2.341 -2.080 -0.644 1.603  H511 A1A2J 18 
A1A2J H522 H3  H 0 0 N N N N Y N 4.343  5.974 -1.505 -3.194 1.148  -0.548 H522 A1A2J 19 
A1A2J H4   H4  H 0 1 N N N N Y N 4.518  7.515 -2.410 -3.515 1.151  1.216  H4   A1A2J 20 
A1A2J HA   H6  H 0 1 N N N N Y N 4.211  8.940 -0.312 -1.457 2.315  1.701  HA   A1A2J 21 
A1A2J H542 H8  H 0 0 N N N N N N 2.927  6.485 1.138  -0.464 1.597  -1.112 H542 A1A2J 22 
A1A2J H541 H9  H 0 0 N N N N N N 2.447  8.213 1.249  0.503  1.857  0.372  H541 A1A2J 23 
A1A2J H591 H10 H 0 0 N N N N N N -1.090 9.562 0.364  2.711  -2.009 1.276  H591 A1A2J 24 
A1A2J H601 H11 H 0 0 N N N N N N -2.241 9.857 2.677  5.022  -1.264 0.886  H601 A1A2J 25 
A1A2J H611 H12 H 0 0 N N N N N N -1.778 8.162 4.566  5.461  0.730  -0.486 H611 A1A2J 26 
A1A2J H621 H13 H 0 0 N N N N N N -0.107 6.230 4.228  3.595  1.990  -1.476 H621 A1A2J 27 
A1A2J H631 H14 H 0 0 N N N N N N 1.032  5.908 1.912  1.276  1.254  -1.109 H631 A1A2J 28 
A1A2J H    H15 H 0 1 N N N Y Y N 6.074  7.773 0.172  -1.277 4.085  0.083  H    A1A2J 29 
A1A2J H2   H16 H 0 1 N Y N Y Y N 5.162  7.920 1.519  -2.171 3.225  -1.025 H2   A1A2J 30 
A1A2J HXT  HXT H 0 1 N Y N N Y Y 1.796  4.662 -3.479 -3.923 -2.588 -0.792 HXT  A1A2J 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1A2J C   C51  SING N N 1  
A1A2J C   O    DOUB N N 2  
A1A2J C51 C52  SING N N 3  
A1A2J C51 N55  SING N N 4  
A1A2J CA  C54  SING N N 5  
A1A2J CA  N    SING N N 6  
A1A2J C54 N55  SING N N 7  
A1A2J C56 C58  SING N N 8  
A1A2J C56 N55  SING N N 9  
A1A2J C56 O57  DOUB N N 10 
A1A2J C58 C59  DOUB Y N 11 
A1A2J C58 C63  SING Y N 12 
A1A2J C59 C60  SING Y N 13 
A1A2J C60 C61  DOUB Y N 14 
A1A2J C61 C62  SING Y N 15 
A1A2J C62 C63  DOUB Y N 16 
A1A2J C   OXT  SING N N 17 
A1A2J C51 H511 SING N N 18 
A1A2J C52 H522 SING N N 19 
A1A2J C52 H4   SING N N 20 
A1A2J CA  HA   SING N N 21 
A1A2J C54 H542 SING N N 22 
A1A2J C54 H541 SING N N 23 
A1A2J C59 H591 SING N N 24 
A1A2J C60 H601 SING N N 25 
A1A2J C61 H611 SING N N 26 
A1A2J C62 H621 SING N N 27 
A1A2J C63 H631 SING N N 28 
A1A2J N   H    SING N N 29 
A1A2J N   H2   SING N N 30 
A1A2J C52 CA   SING N N 31 
A1A2J OXT HXT  SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1A2J SMILES           ACDLabs              14.52   "NC1CC(C(=O)O)N(C1)C(=O)c1ccccc1"                                                                                
A1A2J InChI            InChI                1.06    "InChI=1S/C12H14N2O3/c13-9-6-10(12(16)17)14(7-9)11(15)8-4-2-1-3-5-8/h1-5,9-10H,6-7,13H2,(H,16,17)/t9-,10-/m0/s1" 
A1A2J InChIKey         InChI                1.06    GTODXOQKGULQFP-UWVGGRQHSA-N                                                                                      
A1A2J SMILES_CANONICAL CACTVS               3.385   "N[C@H]1C[C@H](N(C1)C(=O)c2ccccc2)C(O)=O"                                                                        
A1A2J SMILES           CACTVS               3.385   "N[CH]1C[CH](N(C1)C(=O)c2ccccc2)C(O)=O"                                                                          
A1A2J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2C[C@H](C[C@H]2C(=O)O)N"                                                                        
A1A2J SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)N2CC(CC2C(=O)O)N"                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1A2J "SYSTEMATIC NAME" ACDLabs              14.52   "(4S)-4-amino-1-benzoyl-L-proline"                                       
A1A2J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S},4~{S})-4-azanyl-1-(phenylcarbonyl)pyrrolidine-2-carboxylic acid" 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1A2J 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1A2J "Create component"    2024-08-18 RCSB 
A1A2J "Modify backbone"     2024-09-25 PDBE 
A1A2J "Modify PCM"          2024-09-27 PDBE 
A1A2J "Modify linking type" 2024-10-12 RCSB 
A1A2J "Initial release"     2024-10-23 RCSB 
# 
