data_A1A8P
# 
_chem_comp.id                                    A1A8P 
_chem_comp.name                                  "2-[3-[[2-azanyl-7-[(5-chloranyl-1-benzofuran-2-yl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]methyl]phenyl]ethylphosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 Cl N5 O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2024-09-20 
_chem_comp.pdbx_modified_date                    2025-01-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.878 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1A8P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9DON 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1A8P C1  C1  C  0 1 N N N N N N 25.718 -10.920 62.454 0.893  2.304  -0.885 C1  A1A8P 1  
A1A8P C2  C2  C  0 1 Y N N N N N 23.928 -9.911  60.717 -0.662 0.571  0.507  C2  A1A8P 2  
A1A8P C3  C3  C  0 1 Y N N N N N 23.734 -9.977  62.062 0.251  0.127  -0.456 C3  A1A8P 3  
A1A8P C4  C4  C  0 1 N N N N N N 21.844 -9.235  63.609 0.889  -2.150 -1.350 C4  A1A8P 4  
A1A8P C5  C5  C  0 1 Y N N N N N 22.200 -7.893  64.207 2.207  -2.479 -0.697 C5  A1A8P 5  
A1A8P C6  C6  C  0 1 Y N N N N N 23.255 -7.772  65.102 2.305  -3.566 0.152  C6  A1A8P 6  
A1A8P C7  C7  C  0 1 Y N N N N N 23.644 -6.529  65.568 3.514  -3.867 0.751  C7  A1A8P 7  
A1A8P N1  N1  N  0 1 N N N N N N 26.631 -11.500 63.239 1.681  3.178  -1.591 N1  A1A8P 8  
A1A8P N2  N2  N  0 1 N N N N N N 24.582 -10.469 62.986 0.999  1.015  -1.120 N2  A1A8P 9  
A1A8P N3  N3  N  0 1 Y N N N N N 22.490 -9.454  62.308 0.133  -1.236 -0.491 N3  A1A8P 10 
A1A8P N4  N4  N  1 1 Y N N N N N 22.780 -9.369  60.159 -1.284 -0.524 1.007  N4  A1A8P 11 
A1A8P C8  C8  C  0 1 Y N N N N N 22.981 -5.390  65.142 4.624  -3.082 0.501  C8  A1A8P 12 
A1A8P CL  CL1 CL 0 0 N N N N N N 19.580 -15.169 55.002 -9.268 -0.562 -1.306 CL  A1A8P 13 
A1A8P C19 C9  C  0 1 Y N N N N N 19.789 -13.699 55.919 -7.787 -0.041 -0.566 C19 A1A8P 14 
A1A8P C18 C10 C  0 1 Y N N N N N 21.040 -13.111 55.963 -6.855 -0.973 -0.166 C18 A1A8P 15 
A1A8P C20 C11 C  0 1 Y N N N N N 18.707 -13.173 56.604 -7.545 1.314  -0.384 C20 A1A8P 16 
A1A8P C21 C12 C  0 1 Y N N N N N 18.880 -12.035 57.380 -6.375 1.747  0.202  C21 A1A8P 17 
A1A8P C22 C13 C  0 1 Y N N N N N 20.143 -11.469 57.432 -5.424 0.823  0.618  C22 A1A8P 18 
A1A8P C17 C14 C  0 1 Y N N N N N 21.237 -11.968 56.741 -5.667 -0.548 0.429  C17 A1A8P 19 
A1A8P C16 C15 C  0 1 Y N N N N N 22.350 -11.133 57.115 -4.484 -1.233 0.962  C16 A1A8P 20 
A1A8P O4  O1  O  0 1 Y N N N N N 20.524 -10.390 58.211 -4.216 0.938  1.207  O4  A1A8P 21 
A1A8P C15 C16 C  0 1 Y N N N N N 21.885 -10.222 57.986 -3.664 -0.272 1.408  C15 A1A8P 22 
A1A8P C14 C17 C  0 1 N N N N N N 22.527 -9.086  58.738 -2.319 -0.511 2.044  C14 A1A8P 23 
A1A8P C   C18 C  0 1 N N N N N N 25.153 -10.364 60.135 -0.757 1.960  0.760  C   A1A8P 24 
A1A8P O   O2  O  0 1 N N N N N N 25.494 -10.339 58.960 -1.538 2.391  1.590  O   A1A8P 25 
A1A8P C13 C19 C  0 1 Y N N N N N 21.930 -9.104  61.145 -0.819 -1.589 0.422  C13 A1A8P 26 
A1A8P N   N5  N  0 1 N N N N N N 26.001 -10.863 61.111 0.026  2.797  0.045  N   A1A8P 27 
A1A8P C12 C20 C  0 1 Y N N N N N 21.533 -6.740  63.800 3.318  -1.697 -0.952 C12 A1A8P 28 
A1A8P C9  C21 C  0 1 Y N N N N N 21.924 -5.480  64.246 4.526  -1.996 -0.348 C9  A1A8P 29 
A1A8P C10 C22 C  0 1 N N N N N N 21.270 -4.235  63.695 5.738  -1.144 -0.625 C10 A1A8P 30 
A1A8P C11 C23 C  0 1 N N N N N N 19.751 -4.246  63.768 5.803  -0.003 0.392  C11 A1A8P 31 
A1A8P P   P1  P  0 1 N N N N N N 18.905 -4.598  62.237 7.269  1.027  0.057  P   A1A8P 32 
A1A8P O3  O3  O  0 1 N N N N N N 17.888 -5.682  62.423 7.105  1.743  -1.376 O3  A1A8P 33 
A1A8P O2  O4  O  0 1 N N N N N N 18.275 -3.263  61.772 7.411  2.148  1.204  O2  A1A8P 34 
A1A8P O1  O5  O  0 1 N N N N N N 19.959 -4.986  61.170 8.479  0.175  0.047  O1  A1A8P 35 
A1A8P H1  H1  H  0 1 N N N N N N 20.753 -9.285  63.475 1.070  -1.675 -2.315 H1  A1A8P 36 
A1A8P H2  H2  H  0 1 N N N N N N 22.165 -10.027 64.301 0.318  -3.066 -1.498 H2  A1A8P 37 
A1A8P H3  H3  H  0 1 N N N N N N 23.776 -8.656  65.437 1.438  -4.179 0.347  H3  A1A8P 38 
A1A8P H4  H4  H  0 1 N N N N N N 24.465 -6.447  66.265 3.591  -4.716 1.414  H4  A1A8P 39 
A1A8P H5  H5  H  0 1 N N N N N N 26.460 -11.594 64.220 2.305  2.842  -2.253 H5  A1A8P 40 
A1A8P H6  H6  H  0 1 N N N N N N 27.485 -11.840 62.846 1.614  4.132  -1.428 H6  A1A8P 41 
A1A8P H7  H7  H  0 1 N N N N N N 23.289 -4.423  65.510 5.569  -3.318 0.969  H7  A1A8P 42 
A1A8P H8  H8  H  0 1 N N N N N N 21.859 -13.533 55.400 -7.042 -2.027 -0.311 H8  A1A8P 43 
A1A8P H9  H9  H  0 1 N N N N N N 17.737 -13.644 56.535 -8.280 2.037  -0.706 H9  A1A8P 44 
A1A8P H10 H10 H  0 1 N N N N N N 18.054 -11.604 57.927 -6.197 2.803  0.337  H10 A1A8P 45 
A1A8P H11 H11 H  0 1 N N N N N N 23.367 -11.223 56.762 -4.310 -2.299 0.990  H11 A1A8P 46 
A1A8P H12 H12 H  0 1 N N N N N N 23.488 -8.853  58.256 -2.328 -1.470 2.561  H12 A1A8P 47 
A1A8P H13 H13 H  0 1 N N N N N N 21.863 -8.211  58.674 -2.108 0.285  2.758  H13 A1A8P 48 
A1A8P H14 H14 H  0 1 N N N N N N 20.946 -8.675  61.027 -1.137 -2.600 0.628  H14 A1A8P 49 
A1A8P H15 H15 H  0 1 N N N N N N 26.891 -11.210 60.814 -0.027 3.754  0.195  H15 A1A8P 50 
A1A8P H16 H16 H  0 1 N N N N N N 20.695 -6.825  63.124 3.242  -0.851 -1.618 H16 A1A8P 51 
A1A8P H17 H17 H  0 1 N N N N N N 21.564 -4.128  62.640 6.637  -1.755 -0.545 H17 A1A8P 52 
A1A8P H18 H18 H  0 1 N N N N N N 21.637 -3.370  64.267 5.668  -0.730 -1.631 H18 A1A8P 53 
A1A8P H19 H19 H  0 1 N N N N N N 19.422 -3.256  64.116 4.903  0.607  0.312  H19 A1A8P 54 
A1A8P H20 H20 H  0 1 N N N N N N 19.453 -5.010  64.502 5.872  -0.417 1.398  H20 A1A8P 55 
A1A8P H21 H21 H  0 1 N N N N N N 18.088 -6.408  61.843 6.330  2.319  -1.441 H21 A1A8P 56 
A1A8P H22 H22 H  0 1 N N N N N N 18.673 -2.993  60.953 8.171  2.734  1.089  H22 A1A8P 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1A8P CL  C19 SING N N 1  
A1A8P C19 C18 DOUB Y N 2  
A1A8P C19 C20 SING Y N 3  
A1A8P C18 C17 SING Y N 4  
A1A8P C20 C21 DOUB Y N 5  
A1A8P C17 C16 SING Y N 6  
A1A8P C17 C22 DOUB Y N 7  
A1A8P C16 C15 DOUB Y N 8  
A1A8P C21 C22 SING Y N 9  
A1A8P C22 O4  SING Y N 10 
A1A8P C15 O4  SING Y N 11 
A1A8P C15 C14 SING N N 12 
A1A8P C14 N4  SING N N 13 
A1A8P O   C   DOUB N N 14 
A1A8P C   C2  SING N N 15 
A1A8P C   N   SING N N 16 
A1A8P N4  C2  SING Y N 17 
A1A8P N4  C13 DOUB Y N 18 
A1A8P C2  C3  DOUB Y N 19 
A1A8P N   C1  SING N N 20 
A1A8P C13 N3  SING Y N 21 
A1A8P O1  P   DOUB N N 22 
A1A8P O2  P   SING N N 23 
A1A8P C3  N3  SING Y N 24 
A1A8P C3  N2  SING N N 25 
A1A8P P   O3  SING N N 26 
A1A8P P   C11 SING N N 27 
A1A8P N3  C4  SING N N 28 
A1A8P C1  N2  DOUB N N 29 
A1A8P C1  N1  SING N N 30 
A1A8P C4  C5  SING N N 31 
A1A8P C10 C11 SING N N 32 
A1A8P C10 C9  SING N N 33 
A1A8P C12 C5  DOUB Y N 34 
A1A8P C12 C9  SING Y N 35 
A1A8P C5  C6  SING Y N 36 
A1A8P C9  C8  DOUB Y N 37 
A1A8P C6  C7  DOUB Y N 38 
A1A8P C8  C7  SING Y N 39 
A1A8P C4  H1  SING N N 40 
A1A8P C4  H2  SING N N 41 
A1A8P C6  H3  SING N N 42 
A1A8P C7  H4  SING N N 43 
A1A8P N1  H5  SING N N 44 
A1A8P N1  H6  SING N N 45 
A1A8P C8  H7  SING N N 46 
A1A8P C18 H8  SING N N 47 
A1A8P C20 H9  SING N N 48 
A1A8P C21 H10 SING N N 49 
A1A8P C16 H11 SING N N 50 
A1A8P C14 H12 SING N N 51 
A1A8P C14 H13 SING N N 52 
A1A8P C13 H14 SING N N 53 
A1A8P N   H15 SING N N 54 
A1A8P C12 H16 SING N N 55 
A1A8P C10 H17 SING N N 56 
A1A8P C10 H18 SING N N 57 
A1A8P C11 H19 SING N N 58 
A1A8P C11 H20 SING N N 59 
A1A8P O3  H21 SING N N 60 
A1A8P O2  H22 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1A8P SMILES           ACDLabs              14.52 "O=P(O)(O)CCc1cccc(c1)Cn1c[n+](Cc2cc3cc(Cl)ccc3o2)c2C(=O)NC(N)=Nc21"                                                                                                                              
A1A8P InChI            InChI                1.06  "InChI=1S/C23H21ClN5O5P/c24-17-4-5-19-16(9-17)10-18(34-19)12-28-13-29(21-20(28)22(30)27-23(25)26-21)11-15-3-1-2-14(8-15)6-7-35(31,32)33/h1-5,8-10,13H,6-7,11-12H2,(H4-,25,26,27,30,31,32,33)/p+1" 
A1A8P InChIKey         InChI                1.06  LOKWXOGCATZPBT-UHFFFAOYSA-O                                                                                                                                                                       
A1A8P SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(Cc3cccc(CC[P](O)(O)=O)c3)c[n+](Cc4oc5ccc(Cl)cc5c4)c2C(=O)N1"                                                                                                                            
A1A8P SMILES           CACTVS               3.385 "NC1=Nc2n(Cc3cccc(CC[P](O)(O)=O)c3)c[n+](Cc4oc5ccc(Cl)cc5c4)c2C(=O)N1"                                                                                                                            
A1A8P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cn2c[n+](c3c2N=C(NC3=O)N)Cc4cc5cc(ccc5o4)Cl)CCP(=O)(O)O"                                                                                                                              
A1A8P SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cn2c[n+](c3c2N=C(NC3=O)N)Cc4cc5cc(ccc5o4)Cl)CCP(=O)(O)O"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1A8P "SYSTEMATIC NAME" ACDLabs              14.52 "2-amino-7-[(5-chloro-1-benzofuran-2-yl)methyl]-6-oxo-9-{[3-(2-phosphonoethyl)phenyl]methyl}-6,9-dihydro-1H-purin-7-ium"              
A1A8P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-[[2-azanyl-7-[(5-chloranyl-1-benzofuran-2-yl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]methyl]phenyl]ethylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1A8P "Create component" 2024-09-20 RCSB 
A1A8P "Initial release"  2025-01-29 RCSB 
# 
