data_A1AG2
# 
_chem_comp.id                                    A1AG2 
_chem_comp.name                                  "3-{[(3R)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}-6-fluoro-2-hydroxybenzaldehyde" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H24 F I N6 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-03-04 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        662.474 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AG2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9AUU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AG2 C02  C1  C 0 1 Y N N N N N 5.727  12.161 23.695 -4.359 -1.154 0.428  C02  A1AG2 1  
A1AG2 C03  C2  C 0 1 Y N N N N N 6.435  13.198 24.292 -5.530 -1.619 -0.139 C03  A1AG2 2  
A1AG2 C04  C3  C 0 1 Y N N N N N 5.746  14.348 24.793 -5.484 -2.520 -1.191 C04  A1AG2 3  
A1AG2 C05  C4  C 0 1 Y N N N N N 4.383  14.435 24.711 -4.256 -2.958 -1.678 C05  A1AG2 4  
A1AG2 C07  C5  C 0 1 N N N N N N 5.095  16.345 25.676 -5.854 -4.238 -2.569 C07  A1AG2 5  
A1AG2 C09  C6  C 0 1 Y N N N N N 3.650  13.393 24.114 -3.082 -2.492 -1.110 C09  A1AG2 6  
A1AG2 C10  C7  C 0 1 Y N N N N N 4.327  12.288 23.618 -3.131 -1.586 -0.060 C10  A1AG2 7  
A1AG2 C12  C8  C 0 1 Y N N N N N 1.883  10.814 23.979 -1.575 0.620  -0.059 C12  A1AG2 8  
A1AG2 C14  C9  C 0 1 Y N N N N N -0.089 10.941 24.830 -2.070 2.349  -1.286 C14  A1AG2 9  
A1AG2 C15  C10 C 0 1 Y N N N N N -1.442 11.163 25.174 -2.589 3.312  -2.166 C15  A1AG2 10 
A1AG2 C18  C11 C 0 1 Y N N N N N -1.072 10.056 27.181 -0.919 4.764  -1.509 C18  A1AG2 11 
A1AG2 C20  C12 C 0 1 Y N N N N N 0.707  10.270 25.712 -0.937 2.686  -0.526 C20  A1AG2 12 
A1AG2 C22  C13 C 0 1 N N N N N N 3.119  9.589  25.730 0.454  1.455  1.199  C22  A1AG2 13 
A1AG2 C23  C14 C 0 1 N N R N N N 3.126  7.995  25.554 1.693  0.910  0.485  C23  A1AG2 14 
A1AG2 C24  C15 C 0 1 N N N N N N 3.347  7.689  24.165 2.177  1.931  -0.548 C24  A1AG2 15 
A1AG2 C25  C16 C 0 1 N N N N N N 3.705  6.300  23.927 3.451  1.405  -1.215 C25  A1AG2 16 
A1AG2 C26  C17 C 0 1 N N N N N N 4.860  5.806  24.827 4.511  1.142  -0.142 C26  A1AG2 17 
A1AG2 C28  C18 C 0 1 N N N N N N 5.482  5.567  26.919 5.040  -0.222 1.787  C28  A1AG2 18 
A1AG2 C29  C19 C 0 1 Y N N N N N 5.096  5.635  28.407 6.145  -0.955 1.071  C29  A1AG2 19 
A1AG2 C30  C20 C 0 1 Y N N N N N 5.920  6.213  29.367 6.195  -2.335 1.111  C30  A1AG2 20 
A1AG2 C31  C21 C 0 1 Y N N N N N 5.525  6.262  30.700 7.205  -3.021 0.458  C31  A1AG2 21 
A1AG2 C32  C22 C 0 1 Y N N N N N 4.305  5.721  31.066 8.174  -2.333 -0.243 C32  A1AG2 22 
A1AG2 C34  C23 C 0 1 Y N N N N N 3.486  5.153  30.120 8.136  -0.931 -0.293 C34  A1AG2 23 
A1AG2 C35  C24 C 0 1 N N N N N N 2.163  4.563  30.587 9.160  -0.190 -1.035 C35  A1AG2 24 
A1AG2 C37  C25 C 0 1 Y N N N N N 3.887  5.095  28.799 7.105  -0.243 0.369  C37  A1AG2 25 
A1AG2 C39  C26 C 0 1 N N N N N N 4.229  7.382  26.477 2.803  0.661  1.509  C39  A1AG2 26 
A1AG2 F33  F1  F 0 1 N N N N N N 3.859  5.740  32.353 9.158  -3.006 -0.879 F33  A1AG2 27 
A1AG2 I01  I1  I 0 1 N N N N N N 6.750  10.461 22.976 -4.433 0.208  2.017  I01  A1AG2 28 
A1AG2 N13  N1  N 0 1 Y N N N N N 0.658  11.277 23.754 -2.413 1.078  -0.956 N13  A1AG2 29 
A1AG2 N16  N2  N 0 1 N N N N N N -2.314 11.872 24.250 -3.706 3.037  -2.938 N16  A1AG2 30 
A1AG2 N17  N3  N 0 1 Y N N N N N -1.871 10.702 26.341 -1.984 4.493  -2.241 N17  A1AG2 31 
A1AG2 N19  N4  N 0 1 Y N N N N N 0.195  9.838  26.902 -0.400 3.893  -0.668 N19  A1AG2 32 
A1AG2 N21  N5  N 0 1 Y N N N N N 1.934  10.209 25.161 -0.646 1.581  0.240  N21  A1AG2 33 
A1AG2 N27  N6  N 0 1 N N N N N N 4.557  5.992  26.214 4.000  0.159  0.822  N27  A1AG2 34 
A1AG2 O06  O1  O 0 1 N N N N N N 3.947  15.650 25.278 -4.479 -3.832 -2.703 O06  A1AG2 35 
A1AG2 O08  O2  O 0 1 N N N N N N 6.209  15.523 25.435 -6.478 -3.120 -1.911 O08  A1AG2 36 
A1AG2 O38  O3  O 0 1 N N N N N N 3.075  4.519  27.829 7.051  1.111  0.325  O38  A1AG2 37 
A1AG2 S11  S1  S 0 1 N N N N N N 3.299  10.995 22.868 -1.638 -0.988 0.659  S11  A1AG2 38 
A1AG2 H031 H1  H 0 0 N N N N N N 7.510  13.135 24.378 -6.483 -1.279 0.239  H031 A1AG2 39 
A1AG2 H072 H2  H 0 0 N N N N N N 5.187  17.276 25.097 -6.301 -4.404 -3.550 H072 A1AG2 40 
A1AG2 H071 H3  H 0 0 N N N N N N 5.033  16.584 26.748 -5.931 -5.137 -1.958 H071 A1AG2 41 
A1AG2 H091 H4  H 0 0 N N N N N N 2.574  13.452 24.043 -2.128 -2.831 -1.487 H091 A1AG2 42 
A1AG2 H181 H5  H 0 0 N N N N N N -1.473 9.700  28.119 -0.458 5.736  -1.601 H181 A1AG2 43 
A1AG2 H222 H6  H 0 0 N N N N N N 4.007  10.003 25.230 0.164  0.771  1.997  H222 A1AG2 44 
A1AG2 H221 H7  H 0 0 N N N N N N 3.159  9.825  26.804 0.679  2.433  1.623  H221 A1AG2 45 
A1AG2 H231 H8  H 0 0 N N N N N N 2.147  7.612  25.877 1.443  -0.025 -0.015 H231 A1AG2 46 
A1AG2 H242 H9  H 0 0 N N N N N N 2.425  7.911  23.608 1.406  2.079  -1.303 H242 A1AG2 47 
A1AG2 H241 H10 H 0 0 N N N N N N 4.162  8.327  23.793 2.389  2.879  -0.053 H241 A1AG2 48 
A1AG2 H251 H11 H 0 0 N N N N N N 2.821  5.674  24.117 3.230  0.478  -1.743 H251 A1AG2 49 
A1AG2 H252 H12 H 0 0 N N N N N N 4.011  6.193  22.876 3.825  2.146  -1.922 H252 A1AG2 50 
A1AG2 H262 H13 H 0 0 N N N N N N 5.029  4.736  24.638 5.415  0.754  -0.612 H262 A1AG2 51 
A1AG2 H261 H14 H 0 0 N N N N N N 5.772  6.370  24.581 4.742  2.072  0.376  H261 A1AG2 52 
A1AG2 H281 H15 H 0 0 N N N N N N 6.379  6.180  26.749 4.608  -0.871 2.549  H281 A1AG2 53 
A1AG2 H282 H16 H 0 0 N N N N N N 5.695  4.523  26.647 5.444  0.674  2.258  H282 A1AG2 54 
A1AG2 H301 H17 H 0 0 N N N N N N 6.874  6.627  29.075 5.441  -2.883 1.657  H301 A1AG2 55 
A1AG2 H311 H18 H 0 0 N N N N N N 6.164  6.718  31.442 7.234  -4.100 0.497  H311 A1AG2 56 
A1AG2 H1   H19 H 0 1 N N N N N N 1.832  4.653  31.611 9.949  -0.723 -1.546 H1   A1AG2 57 
A1AG2 H391 H22 H 0 0 N N N N N N 3.882  7.458  27.518 3.043  1.594  2.019  H391 A1AG2 58 
A1AG2 H392 H23 H 0 0 N N N N N N 5.146  7.977  26.352 2.467  -0.076 2.238  H392 A1AG2 59 
A1AG2 H161 H24 H 0 0 N N N N N N -3.232 11.937 24.641 -4.139 2.172  -2.875 H161 A1AG2 60 
A1AG2 H162 H25 H 0 0 N N N N N N -1.954 12.791 24.090 -4.055 3.711  -3.543 H162 A1AG2 61 
A1AG2 H381 H27 H 0 0 N N N N N N 2.294  4.166  28.238 7.536  1.547  1.039  H381 A1AG2 62 
A1AG2 O1   O4  O 0 1 N N N N N N 1.404  3.904  29.633 9.123  1.022  -1.075 O1   A1AG2 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AG2 C02 I01  SING N N 1  
A1AG2 C03 C02  DOUB Y N 2  
A1AG2 C04 C03  SING Y N 3  
A1AG2 C05 C04  DOUB Y N 4  
A1AG2 C07 O06  SING N N 5  
A1AG2 O08 C07  SING N N 6  
A1AG2 O06 C05  SING N N 7  
A1AG2 C09 C05  SING Y N 8  
A1AG2 C10 C09  DOUB Y N 9  
A1AG2 S11 C10  SING N N 10 
A1AG2 C12 S11  SING N N 11 
A1AG2 N13 C12  DOUB Y N 12 
A1AG2 C14 N13  SING Y N 13 
A1AG2 C15 C14  DOUB Y N 14 
A1AG2 N16 C15  SING N N 15 
A1AG2 N17 C15  SING Y N 16 
A1AG2 C18 N17  DOUB Y N 17 
A1AG2 N19 C18  SING Y N 18 
A1AG2 C20 N19  DOUB Y N 19 
A1AG2 N21 C20  SING Y N 20 
A1AG2 C22 N21  SING N N 21 
A1AG2 C23 C22  SING N N 22 
A1AG2 C24 C23  SING N N 23 
A1AG2 C25 C24  SING N N 24 
A1AG2 C26 C25  SING N N 25 
A1AG2 N27 C26  SING N N 26 
A1AG2 C29 C28  SING N N 27 
A1AG2 C30 C29  DOUB Y N 28 
A1AG2 C31 C30  SING Y N 29 
A1AG2 C32 C31  DOUB Y N 30 
A1AG2 F33 C32  SING N N 31 
A1AG2 C34 C32  SING Y N 32 
A1AG2 C35 C34  SING N N 33 
A1AG2 C37 C34  DOUB Y N 34 
A1AG2 O38 C37  SING N N 35 
A1AG2 C28 N27  SING N N 36 
A1AG2 C39 N27  SING N N 37 
A1AG2 C02 C10  SING Y N 38 
A1AG2 C04 O08  SING N N 39 
A1AG2 C12 N21  SING Y N 40 
A1AG2 C14 C20  SING Y N 41 
A1AG2 C23 C39  SING N N 42 
A1AG2 C29 C37  SING Y N 43 
A1AG2 C03 H031 SING N N 44 
A1AG2 C07 H072 SING N N 45 
A1AG2 C07 H071 SING N N 46 
A1AG2 C09 H091 SING N N 47 
A1AG2 C18 H181 SING N N 48 
A1AG2 C22 H222 SING N N 49 
A1AG2 C22 H221 SING N N 50 
A1AG2 C23 H231 SING N N 51 
A1AG2 C24 H242 SING N N 52 
A1AG2 C24 H241 SING N N 53 
A1AG2 C25 H251 SING N N 54 
A1AG2 C25 H252 SING N N 55 
A1AG2 C26 H262 SING N N 56 
A1AG2 C26 H261 SING N N 57 
A1AG2 C28 H281 SING N N 58 
A1AG2 C28 H282 SING N N 59 
A1AG2 C30 H301 SING N N 60 
A1AG2 C31 H311 SING N N 61 
A1AG2 C35 H1   SING N N 62 
A1AG2 C39 H391 SING N N 63 
A1AG2 C39 H392 SING N N 64 
A1AG2 N16 H161 SING N N 65 
A1AG2 N16 H162 SING N N 66 
A1AG2 O38 H381 SING N N 67 
A1AG2 C35 O1   DOUB N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AG2 SMILES           ACDLabs              12.01 "Fc1ccc(CN2CCCC(C2)Cn2c3ncnc(N)c3nc2Sc2cc3OCOc3cc2I)c(O)c1C=O"                                                                                                                                                         
A1AG2 InChI            InChI                1.06  "InChI=1S/C26H24FIN6O4S/c27-17-4-3-15(23(36)16(17)11-35)10-33-5-1-2-14(8-33)9-34-25-22(24(29)30-12-31-25)32-26(34)39-21-7-20-19(6-18(21)28)37-13-38-20/h3-4,6-7,11-12,14,36H,1-2,5,8-10,13H2,(H2,29,30,31)/t14-/m0/s1" 
A1AG2 InChIKey         InChI                1.06  KTMOYNRHBABLKL-AWEZNQCLSA-N                                                                                                                                                                                            
A1AG2 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(C[C@@H]3CCCN(C3)Cc4ccc(F)c(C=O)c4O)c(Sc5cc6OCOc6cc5I)nc12"                                                                                                                                                  
A1AG2 SMILES           CACTVS               3.385 "Nc1ncnc2n(C[CH]3CCCN(C3)Cc4ccc(F)c(C=O)c4O)c(Sc5cc6OCOc6cc5I)nc12"                                                                                                                                                    
A1AG2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1CN2CCC[C@@H](C2)Cn3c4c(c(ncn4)N)nc3Sc5cc6c(cc5I)OCO6)O)C=O)F"                                                                                                                                              
A1AG2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1CN2CCCC(C2)Cn3c4c(c(ncn4)N)nc3Sc5cc6c(cc5I)OCO6)O)C=O)F"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AG2 "SYSTEMATIC NAME" ACDLabs              12.01 "3-{[(3R)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}-6-fluoro-2-hydroxybenzaldehyde"      
A1AG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[(3~{S})-3-[[6-azanyl-8-[(6-iodanyl-1,3-benzodioxol-5-yl)sulfanyl]purin-9-yl]methyl]piperidin-1-yl]methyl]-6-fluoranyl-2-oxidanyl-benzaldehyde" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AG2 "Create component" 2024-03-04 RCSB 
A1AG2 "Modify PCM"       2024-09-27 PDBE 
A1AG2 "Initial release"  2024-10-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AG2 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C35 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
