data_A1AGD
# 
_chem_comp.id                                    A1AGD 
_chem_comp.name                                  "2,3-dimethyl-5-[(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H46 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-29 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.664 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AGD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9AU4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AGD C1  C1  C 0 1 N N N N N N 79.077 98.833  124.557 7.227   1.549  1.281  C1  A1AGD 1  
A1AGD C2  C2  C 0 1 N N N N N N 78.038 97.733  124.754 6.902   0.110  1.214  C2  A1AGD 2  
A1AGD C11 C3  C 0 1 N N N N N N 72.586 97.283  123.661 2.290   -3.039 0.372  C11 A1AGD 3  
A1AGD C14 C4  C 0 1 N N R N N N 69.338 96.086  124.663 -1.078  -1.193 0.097  C14 A1AGD 4  
A1AGD C15 C5  C 0 1 N N N N N N 67.869 95.580  124.580 -0.687  0.130  0.759  C15 A1AGD 5  
A1AGD C16 C6  C 0 1 N N N N N N 68.291 97.250  124.877 -2.487  -1.588 0.542  C16 A1AGD 6  
A1AGD C17 C7  C 0 1 N N N N N N 67.852 97.387  126.379 -3.494  -0.561 0.020  C17 A1AGD 7  
A1AGD C19 C8  C 0 1 N N R N N N 67.079 99.482  127.470 -5.910  0.070  -0.057 C19 A1AGD 8  
A1AGD C23 C9  C 0 1 N N N N N N 63.911 97.982  129.123 -9.675  0.515  0.620  C23 A1AGD 9  
A1AGD C24 C10 C 0 1 N N N N N N 63.421 98.283  130.347 -10.657 1.610  0.201  C24 A1AGD 10 
A1AGD C25 C11 C 0 1 N N N N N N 62.033 97.920  129.743 -10.810 1.603  -1.322 C25 A1AGD 11 
A1AGD C26 C12 C 0 1 N N N N N N 62.261 98.441  131.385 -12.017 1.351  0.851  C26 A1AGD 12 
A1AGD C4  C13 C 0 1 N N N N N N 77.017 98.266  122.367 5.877   0.512  -0.964 C4  A1AGD 13 
A1AGD C5  C14 C 0 1 N N N N N N 78.060 99.371  122.178 6.201   1.952  -0.897 C5  A1AGD 14 
A1AGD C6  C15 C 0 1 N N N N N N 79.088 99.660  123.270 6.844   2.445  0.170  C6  A1AGD 15 
A1AGD C8  C16 C 0 1 N N N N N N 74.530 96.882  123.991 4.524   -2.074 0.576  C8  A1AGD 16 
A1AGD C9  C17 C 0 1 N N N N N N 73.754 96.413  123.001 3.656   -2.709 -0.172 C9  A1AGD 17 
A1AGD C10 C18 C 0 1 N N N N N N 72.444 96.277  122.208 4.024   -3.110 -1.577 C10 A1AGD 18 
A1AGD C12 C19 C 0 1 N N N N N N 71.744 96.439  124.696 1.300   -1.948 -0.042 C12 A1AGD 19 
A1AGD C13 C20 C 0 1 N N N N N N 70.289 97.032  124.818 -0.087  -2.283 0.511  C13 A1AGD 20 
A1AGD C18 C21 C 0 1 N N N N N N 68.078 98.851  126.825 -4.903  -0.957 0.465  C18 A1AGD 21 
A1AGD C20 C22 C 0 1 N N N N N N 66.132 100.454 128.183 -5.940  0.023  -1.586 C20 A1AGD 22 
A1AGD C21 C23 C 0 1 N N N N N N 65.879 98.445  127.550 -7.301  -0.255 0.491  C21 A1AGD 23 
A1AGD C22 C24 C 0 1 N N N N N N 65.458 98.163  129.042 -8.284  0.840  0.072  C22 A1AGD 24 
A1AGD C3  C25 C 0 1 N N N N N N 77.007 97.444  123.662 6.260   -0.383 0.146  C3  A1AGD 25 
A1AGD C52 C26 C 0 1 N N N N N N 78.071 100.201 120.886 5.811   2.865  -2.030 C52 A1AGD 26 
A1AGD C53 C27 C 0 1 N N N N N N 80.134 100.771 123.073 7.175   3.914  0.238  C53 A1AGD 27 
A1AGD C7  C28 C 0 1 N N N N N N 75.972 96.319  123.880 5.929   -1.852 0.078  C7  A1AGD 28 
A1AGD O1  O1  O 0 1 N N N N N N 76.235 98.061  121.512 5.294   0.065  -1.931 O1  A1AGD 29 
A1AGD O2  O2  O 0 1 N N N N N N 79.870 99.048  125.398 7.805   1.997  2.250  O2  A1AGD 30 
A1AGD H1  H1  H 0 1 N N N N N N 78.031 97.157  125.667 7.182   -0.545 2.026  H1  A1AGD 31 
A1AGD H2  H2  H 0 1 N N N N N N 73.033 98.143  124.182 1.962   -3.998 -0.027 H2  A1AGD 32 
A1AGD H3  H3  H 0 1 N N N N N N 71.917 97.643  122.866 2.336   -3.094 1.460  H3  A1AGD 33 
A1AGD H4  H4  H 0 1 N N N N N N 69.349 95.891  125.745 -1.058  -1.077 -0.987 H4  A1AGD 34 
A1AGD H5  H5  H 0 1 N N N N N N 67.864 94.497  124.386 -0.706  0.014  1.842  H5  A1AGD 35 
A1AGD H6  H6  H 0 1 N N N N N N 67.357 95.784  125.532 0.317   0.412  0.442  H6  A1AGD 36 
A1AGD H7  H7  H 0 1 N N N N N N 67.347 96.101  123.764 -1.392  0.907  0.464  H7  A1AGD 37 
A1AGD H8  H8  H 0 1 N N N N N N 68.745 98.198  124.553 -2.732  -2.572 0.142  H8  A1AGD 38 
A1AGD H9  H9  H 0 1 N N N N N N 67.401 97.042  124.266 -2.530  -1.618 1.630  H9  A1AGD 39 
A1AGD H10 H10 H 0 1 N N N N N N 66.787 97.129  126.479 -3.250  0.423  0.420  H10 A1AGD 40 
A1AGD H11 H11 H 0 1 N N N N N N 68.454 96.711  127.005 -3.452  -0.532 -1.069 H11 A1AGD 41 
A1AGD H12 H12 H 0 1 N N N N N N 63.665 96.935  128.891 -9.633  0.461  1.707  H12 A1AGD 42 
A1AGD H13 H13 H 0 1 N N N N N N 63.439 98.642  128.381 -10.007 -0.444 0.221  H13 A1AGD 43 
A1AGD H14 H14 H 0 1 N N N N N N 63.559 97.237  130.660 -10.279 2.580  0.523  H14 A1AGD 44 
A1AGD H15 H15 H 0 1 N N N N N N 61.254 98.046  130.510 -11.509 2.384  -1.620 H15 A1AGD 45 
A1AGD H16 H16 H 0 1 N N N N N N 61.819 98.582  128.891 -9.840  1.788  -1.785 H16 A1AGD 46 
A1AGD H17 H17 H 0 1 N N N N N N 62.044 96.875  129.401 -11.188 0.633  -1.645 H17 A1AGD 47 
A1AGD H18 H18 H 0 1 N N N N N N 62.673 98.782  132.347 -11.909 1.356  1.935  H18 A1AGD 48 
A1AGD H19 H19 H 0 1 N N N N N N 61.536 99.180  131.014 -12.717 2.132  0.552  H19 A1AGD 49 
A1AGD H20 H20 H 0 1 N N N N N N 61.759 97.472  131.524 -12.396 0.381  0.528  H20 A1AGD 50 
A1AGD H21 H21 H 0 1 N N N N N N 74.195 97.561  124.762 4.232   -1.709 1.550  H21 A1AGD 51 
A1AGD H24 H24 H 0 1 N N N N N N 72.601 95.604  121.352 3.169   -3.588 -2.055 H24 A1AGD 52 
A1AGD H25 H25 H 0 1 N N N N N N 71.661 95.863  122.861 4.310   -2.225 -2.145 H25 A1AGD 53 
A1AGD H26 H26 H 0 1 N N N N N N 72.132 97.267  121.843 4.861   -3.808 -1.548 H26 A1AGD 54 
A1AGD H27 H27 H 0 1 N N N N N N 71.685 95.396  124.353 1.628   -0.989 0.357  H27 A1AGD 55 
A1AGD H28 H28 H 0 1 N N N N N N 72.235 96.474  125.680 1.254   -1.893 -1.130 H28 A1AGD 56 
A1AGD H29 H29 H 0 1 N N N N N N 70.154 97.801  124.043 -0.042  -2.338 1.598  H29 A1AGD 57 
A1AGD H30 H30 H 0 1 N N N N N N 70.175 97.489  125.812 -0.416  -3.243 0.112  H30 A1AGD 58 
A1AGD H31 H31 H 0 1 N N N N N N 68.952 98.857  127.493 -5.148  -1.941 0.065  H31 A1AGD 59 
A1AGD H32 H32 H 0 1 N N N N N N 65.213 99.924  128.475 -6.658  0.755  -1.958 H32 A1AGD 60 
A1AGD H33 H33 H 0 1 N N N N N N 66.625 100.854 129.081 -4.950  0.255  -1.976 H33 A1AGD 61 
A1AGD H34 H34 H 0 1 N N N N N N 65.878 101.282 127.505 -6.236  -0.973 -1.913 H34 A1AGD 62 
A1AGD H35 H35 H 0 1 N N N N N N 65.015 98.855  127.006 -7.634  -1.214 0.092  H35 A1AGD 63 
A1AGD H36 H36 H 0 1 N N N N N N 66.192 97.500  127.082 -7.260  -0.310 1.579  H36 A1AGD 64 
A1AGD H37 H37 H 0 1 N N N N N N 65.761 99.010  129.674 -8.325  0.894  -1.016 H37 A1AGD 65 
A1AGD H38 H38 H 0 1 N N N N N N 65.953 97.246  129.395 -7.951  1.798  0.471  H38 A1AGD 66 
A1AGD H39 H39 H 0 1 N N N N N N 78.884 100.940 120.931 5.302   2.289  -2.803 H39 A1AGD 67 
A1AGD H40 H40 H 0 1 N N N N N N 78.228 99.536  120.024 5.143   3.642  -1.657 H40 A1AGD 68 
A1AGD H41 H41 H 0 1 N N N N N N 77.108 100.722 120.777 6.705   3.326  -2.450 H41 A1AGD 69 
A1AGD H42 H42 H 0 1 N N N N N N 79.982 101.249 122.094 7.693   4.126  1.173  H42 A1AGD 70 
A1AGD H43 H43 H 0 1 N N N N N N 80.025 101.523 123.869 7.817   4.181  -0.601 H43 A1AGD 71 
A1AGD H44 H44 H 0 1 N N N N N N 81.143 100.336 123.116 6.255   4.496  0.192  H44 A1AGD 72 
A1AGD H45 H45 H 0 1 N N N N N N 76.218 95.783  124.808 6.627   -2.411 0.701  H45 A1AGD 73 
A1AGD H46 H46 H 0 1 N N N N N N 76.018 95.622  123.030 6.007   -2.195 -0.953 H46 A1AGD 74 
A1AGD H47 H47 H 0 1 N N N N N N 67.463 99.129  128.438 -5.615  1.067  0.270  H47 A1AGD 75 
A1AGD H22 H22 H 0 1 N N N N N N 68.303 99.436  125.921 -4.946  -0.987 1.554  H22 A1AGD 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AGD C1  C2  SING N N 1  
A1AGD C1  C6  SING N N 2  
A1AGD C1  O2  DOUB N N 3  
A1AGD C2  C3  DOUB N N 4  
A1AGD C11 C9  SING N N 5  
A1AGD C11 C12 SING N N 6  
A1AGD C14 C15 SING N N 7  
A1AGD C14 C16 SING N N 8  
A1AGD C14 C13 SING N N 9  
A1AGD C16 C17 SING N N 10 
A1AGD C17 C18 SING N N 11 
A1AGD C19 C18 SING N N 12 
A1AGD C19 C20 SING N N 13 
A1AGD C19 C21 SING N N 14 
A1AGD C23 C24 SING N N 15 
A1AGD C23 C22 SING N N 16 
A1AGD C24 C25 SING N N 17 
A1AGD C24 C26 SING N N 18 
A1AGD C4  C5  SING N N 19 
A1AGD C4  C3  SING N N 20 
A1AGD C4  O1  DOUB N N 21 
A1AGD C5  C6  DOUB N N 22 
A1AGD C5  C52 SING N N 23 
A1AGD C6  C53 SING N N 24 
A1AGD C8  C9  DOUB N E 25 
A1AGD C8  C7  SING N N 26 
A1AGD C9  C10 SING N N 27 
A1AGD C12 C13 SING N N 28 
A1AGD C21 C22 SING N N 29 
A1AGD C3  C7  SING N N 30 
A1AGD C2  H1  SING N N 31 
A1AGD C11 H2  SING N N 32 
A1AGD C11 H3  SING N N 33 
A1AGD C14 H4  SING N N 34 
A1AGD C15 H5  SING N N 35 
A1AGD C15 H6  SING N N 36 
A1AGD C15 H7  SING N N 37 
A1AGD C16 H8  SING N N 38 
A1AGD C16 H9  SING N N 39 
A1AGD C17 H10 SING N N 40 
A1AGD C17 H11 SING N N 41 
A1AGD C23 H12 SING N N 42 
A1AGD C23 H13 SING N N 43 
A1AGD C24 H14 SING N N 44 
A1AGD C25 H15 SING N N 45 
A1AGD C25 H16 SING N N 46 
A1AGD C25 H17 SING N N 47 
A1AGD C26 H18 SING N N 48 
A1AGD C26 H19 SING N N 49 
A1AGD C26 H20 SING N N 50 
A1AGD C8  H21 SING N N 51 
A1AGD C10 H24 SING N N 52 
A1AGD C10 H25 SING N N 53 
A1AGD C10 H26 SING N N 54 
A1AGD C12 H27 SING N N 55 
A1AGD C12 H28 SING N N 56 
A1AGD C13 H29 SING N N 57 
A1AGD C13 H30 SING N N 58 
A1AGD C18 H31 SING N N 59 
A1AGD C20 H32 SING N N 60 
A1AGD C20 H33 SING N N 61 
A1AGD C20 H34 SING N N 62 
A1AGD C21 H35 SING N N 63 
A1AGD C21 H36 SING N N 64 
A1AGD C22 H37 SING N N 65 
A1AGD C22 H38 SING N N 66 
A1AGD C52 H39 SING N N 67 
A1AGD C52 H40 SING N N 68 
A1AGD C52 H41 SING N N 69 
A1AGD C53 H42 SING N N 70 
A1AGD C53 H43 SING N N 71 
A1AGD C53 H44 SING N N 72 
A1AGD C7  H45 SING N N 73 
A1AGD C7  H46 SING N N 74 
A1AGD C19 H47 SING N N 75 
A1AGD C18 H22 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AGD SMILES           ACDLabs              14.52 "CC=1C(=O)C=C(C\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C)C(=O)C=1C"                                                                                    
A1AGD InChI            InChI                1.06  "InChI=1S/C28H46O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-16-23(5)17-18-26-19-27(29)24(6)25(7)28(26)30/h17,19-22H,8-16,18H2,1-7H3/b23-17+" 
A1AGD InChIKey         InChI                1.06  ZPVFWTSVFVOTQH-HAVVHWLPSA-N                                                                                                                 
A1AGD SMILES_CANONICAL CACTVS               3.385 "CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC/C(C)=C/CC1=CC(=O)C(=C(C)C1=O)C"                                                                           
A1AGD SMILES           CACTVS               3.385 "CC(C)CCC[CH](C)CCC[CH](C)CCCC(C)=CCC1=CC(=O)C(=C(C)C1=O)C"                                                                                 
A1AGD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=CC1=O)C/C=C(\C)/CCCC(C)CCCC(C)CCCC(C)C)C"                                                                                    
A1AGD SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=CC1=O)CC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AGD "SYSTEMATIC NAME" ACDLabs              14.52 "2,3-dimethyl-5-[(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione" 
A1AGD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,3-dimethyl-5-[(~{E})-3,7,11,15-tetramethylhexadec-2-enyl]cyclohexa-2,5-diene-1,4-dione"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AGD "Create component" 2024-02-29 RCSB 
A1AGD "Initial release"  2024-12-25 RCSB 
# 
