data_A1BDT
# 
_chem_comp.id                                    A1BDT 
_chem_comp.name                                  "N,N'-[butane-1,4-diylbis(azanediylpropane-3,1-diyl)]bis[3-(3,4-dihydroxyphenyl)propanamide]" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H42 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-15 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        530.656 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BDT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9DXT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BDT C17 C1  C 0 1 N N N N N N 192.220 193.277 150.445 0.668   0.376  0.135  C17 A1BDT 1  
A1BDT C21 C2  C 0 1 N N N N N N 192.902 192.769 155.010 -4.223  0.900  0.121  C21 A1BDT 2  
A1BDT C22 C3  C 0 1 N N N N N N 192.218 191.595 155.677 -5.544  0.128  0.142  C22 A1BDT 3  
A1BDT C28 C4  C 0 1 N N N N N N 190.711 194.580 159.759 -11.618 1.272  0.112  C28 A1BDT 4  
A1BDT C12 C5  C 0 1 N N N N N N 193.047 193.516 146.187 6.708   -1.100 0.173  C12 A1BDT 5  
A1BDT C14 C6  C 0 1 N N N N N N 191.447 192.235 147.706 4.219   -0.884 0.167  C14 A1BDT 6  
A1BDT C16 C7  C 0 1 N N N N N N 193.225 192.675 149.488 1.810   -0.642 0.161  C16 A1BDT 7  
A1BDT C23 C8  C 0 1 N N N N N N 192.359 191.545 157.185 -6.713  1.116  0.116  C23 A1BDT 8  
A1BDT N24 N1  N 0 1 N N N N N N 191.856 192.761 157.807 -7.977  0.377  0.136  N24 A1BDT 9  
A1BDT C31 C9  C 0 1 Y N N N N N 192.365 193.040 162.810 -14.699 -0.587 -1.038 C31 A1BDT 10 
A1BDT C1  C10 C 0 1 Y N N N N N 192.727 194.918 141.646 13.509  -0.116 1.344  C1  A1BDT 11 
A1BDT C13 C11 C 0 1 N N N N N N 191.771 193.538 147.006 5.540   -0.112 0.147  C13 A1BDT 12 
A1BDT C18 C12 C 0 1 N N N N N N 191.731 192.232 151.405 -0.673  -0.360 0.154  C18 A1BDT 13 
A1BDT C19 C13 C 0 1 N N N N N N 192.671 192.108 152.581 -1.814  0.658  0.127  C19 A1BDT 14 
A1BDT C2  C14 C 0 1 Y N N N N N 191.947 194.651 140.535 14.706  0.576  1.331  C2  A1BDT 15 
A1BDT C25 C15 C 0 1 N N N N N N 192.637 193.671 158.385 -9.148  1.044  0.118  C25 A1BDT 16 
A1BDT C27 C16 C 0 1 N N N N N N 191.934 194.901 158.903 -10.449 0.284  0.138  C27 A1BDT 17 
A1BDT C29 C17 C 0 1 Y N N N N N 191.030 193.629 160.885 -12.918 0.512  0.133  C29 A1BDT 18 
A1BDT C3  C18 C 0 1 Y N N N N N 192.084 193.448 139.859 15.311  0.891  0.125  C3  A1BDT 19 
A1BDT C30 C19 C 0 1 Y N N N N N 192.052 193.918 161.785 -13.505 0.117  -1.055 C30 A1BDT 20 
A1BDT C32 C20 C 0 1 Y N N N N N 191.649 191.849 162.948 -15.304 -0.895 0.176  C32 A1BDT 21 
A1BDT C33 C21 C 0 1 Y N N N N N 190.630 191.558 162.054 -14.708 -0.502 1.363  C33 A1BDT 22 
A1BDT C34 C22 C 0 1 Y N N N N N 190.327 192.441 161.034 -13.514 0.195  1.340  C34 A1BDT 23 
A1BDT C4  C23 C 0 1 Y N N N N N 193.013 192.510 140.310 14.712  0.508  -1.071 C4  A1BDT 24 
A1BDT C5  C24 C 0 1 Y N N N N N 193.790 192.788 141.423 13.512  -0.185 -1.051 C5  A1BDT 25 
A1BDT C6  C25 C 0 1 Y N N N N N 193.659 193.996 142.105 12.914  -0.496 0.156  C6  A1BDT 26 
A1BDT C7  C26 C 0 1 N N N N N N 194.558 194.339 143.273 11.613  -1.256 0.176  C7  A1BDT 27 
A1BDT C8  C27 C 0 1 N N N N N N 195.104 193.187 144.159 10.445  -0.268 0.150  C8  A1BDT 28 
A1BDT C9  C28 C 0 1 N N N N N N 194.121 192.080 144.475 9.144   -1.028 0.170  C9  A1BDT 29 
A1BDT N11 N2  N 0 1 N N N N N N 193.132 192.340 145.330 7.973   -0.361 0.153  N11 A1BDT 30 
A1BDT N15 N3  N 0 1 N N N N N N 192.596 191.735 148.515 3.097   0.064  0.142  N15 A1BDT 31 
A1BDT N20 N4  N 0 1 N N N N N N 192.315 193.055 153.672 -3.102  -0.049 0.146  N20 A1BDT 32 
A1BDT O10 O1  O 0 1 N N N N N N 194.249 190.977 143.951 9.150   -2.241 0.203  O10 A1BDT 33 
A1BDT O26 O2  O 0 1 N N N N N N 193.853 193.535 158.502 -9.155  2.257  0.086  O26 A1BDT 34 
A1BDT O35 O3  O 0 1 N N N N N N 191.965 190.989 163.948 -16.478 -1.581 0.198  O35 A1BDT 35 
A1BDT O36 O4  O 0 1 N N N N N N 193.366 193.314 163.683 -15.280 -0.971 -2.206 O36 A1BDT 36 
A1BDT O37 O5  O 0 1 N N N N N N 193.121 191.331 139.647 15.301  0.816  -2.257 O37 A1BDT 37 
A1BDT O38 O6  O 0 1 N N N N N N 191.342 193.161 138.760 16.488  1.572  0.111  O38 A1BDT 38 
A1BDT H1  H1  H 0 1 N N N N N N 192.697 194.093 151.008 0.739   1.025  1.008  H1  A1BDT 39 
A1BDT H2  H2  H 0 1 N N N N N N 191.367 193.674 149.875 0.739   0.978  -0.772 H2  A1BDT 40 
A1BDT H3  H3  H 0 1 N N N N N N 193.971 192.538 154.889 -4.169  1.503  -0.785 H3  A1BDT 41 
A1BDT H4  H4  H 0 1 N N N N N N 192.788 193.658 155.648 -4.169  1.550  0.995  H4  A1BDT 42 
A1BDT H5  H5  H 0 1 N N N N N N 191.146 191.642 155.436 -5.599  -0.522 -0.731 H5  A1BDT 43 
A1BDT H6  H6  H 0 1 N N N N N N 192.646 190.670 155.263 -5.599  -0.475 1.048  H6  A1BDT 44 
A1BDT H7  H7  H 0 1 N N N N N N 190.324 195.517 160.187 -11.563 1.922  0.986  H7  A1BDT 45 
A1BDT H8  H8  H 0 1 N N N N N N 189.942 194.124 159.119 -11.563 1.875  -0.794 H8  A1BDT 46 
A1BDT H9  H9  H 0 1 N N N N N N 193.908 193.518 146.872 6.654   -1.703 1.079  H9  A1BDT 47 
A1BDT H10 H10 H 0 1 N N N N N N 193.079 194.417 145.556 6.653   -1.750 -0.700 H10 A1BDT 48 
A1BDT H11 H11 H 0 1 N N N N N N 190.586 192.394 148.372 4.164   -1.534 -0.706 H11 A1BDT 49 
A1BDT H12 H12 H 0 1 N N N N N N 191.190 191.479 146.949 4.165   -1.487 1.074  H12 A1BDT 50 
A1BDT H13 H13 H 0 1 N N N N N N 193.981 192.127 150.069 1.739   -1.244 1.067  H13 A1BDT 51 
A1BDT H14 H14 H 0 1 N N N N N N 193.711 193.488 148.929 1.738   -1.291 -0.712 H14 A1BDT 52 
A1BDT H15 H15 H 0 1 N N N N N N 191.790 190.685 157.569 -6.658  1.766  0.989  H15 A1BDT 53 
A1BDT H16 H16 H 0 1 N N N N N N 193.422 191.426 157.441 -6.658  1.719  -0.790 H16 A1BDT 54 
A1BDT H17 H17 H 0 1 N N N N N N 190.869 192.922 157.800 -7.972  -0.593 0.161  H17 A1BDT 55 
A1BDT H18 H18 H 0 1 N N N N N N 192.609 195.858 142.165 13.041  -0.365 2.285  H18 A1BDT 56 
A1BDT H19 H19 H 0 1 N N N N N N 191.868 194.323 147.770 5.594   0.538  1.020  H19 A1BDT 57 
A1BDT H20 H20 H 0 1 N N N N N N 190.936 193.783 146.333 5.594   0.491  -0.759 H20 A1BDT 58 
A1BDT H21 H21 H 0 1 N N N N N N 190.732 192.515 151.769 -0.744  -1.009 -0.719 H21 A1BDT 59 
A1BDT H22 H22 H 0 1 N N N N N N 191.672 191.264 150.886 -0.744  -0.962 1.060  H22 A1BDT 60 
A1BDT H23 H23 H 0 1 N N N N N N 192.621 191.080 152.970 -1.743  1.307  1.001  H23 A1BDT 61 
A1BDT H24 H24 H 0 1 N N N N N N 193.695 192.323 152.243 -1.743  1.260  -0.779 H24 A1BDT 62 
A1BDT H25 H25 H 0 1 N N N N N N 191.229 195.382 140.193 15.169  0.871  2.261  H25 A1BDT 63 
A1BDT H26 H26 H 0 1 N N N N N N 192.645 195.479 159.512 -10.504 -0.319 1.045  H26 A1BDT 64 
A1BDT H27 H27 H 0 1 N N N N N N 191.610 195.506 158.044 -10.504 -0.366 -0.735 H27 A1BDT 65 
A1BDT H28 H28 H 0 1 N N N N N N 192.608 194.838 161.683 -13.034 0.357  -1.997 H28 A1BDT 66 
A1BDT H29 H29 H 0 1 N N N N N N 190.071 190.639 162.155 -15.175 -0.740 2.307  H29 A1BDT 67 
A1BDT H30 H30 H 0 1 N N N N N N 189.532 192.203 160.343 -13.052 0.505  2.266  H30 A1BDT 68 
A1BDT H31 H31 H 0 1 N N N N N N 194.508 192.058 141.767 13.045  -0.482 -1.978 H31 A1BDT 69 
A1BDT H32 H32 H 0 1 N N N N N N 195.428 194.874 142.865 11.558  -1.906 -0.697 H32 A1BDT 70 
A1BDT H33 H33 H 0 1 N N N N N N 193.990 195.012 143.932 11.559  -1.859 1.082  H33 A1BDT 71 
A1BDT H34 H34 H 0 1 N N N N N N 195.963 192.738 143.638 10.499  0.382  1.023  H34 A1BDT 72 
A1BDT H35 H35 H 0 1 N N N N N N 195.440 193.623 145.111 10.499  0.335  -0.756 H35 A1BDT 73 
A1BDT H36 H36 H 0 1 N N N N N N 192.388 191.674 145.388 7.968   0.609  0.127  H36 A1BDT 74 
A1BDT H37 H37 H 0 1 N N N N N N 192.274 190.942 149.032 3.161   0.720  0.907  H37 A1BDT 75 
A1BDT H39 H39 H 0 1 N N N N N N 192.618 193.967 153.395 -3.166  -0.704 -0.618 H39 A1BDT 76 
A1BDT H41 H41 H 0 1 N N N N N N 192.681 191.347 164.460 -16.372 -2.541 0.233  H41 A1BDT 77 
A1BDT H42 H42 H 0 1 N N N N N N 193.439 192.607 164.314 -15.894 -0.319 -2.573 H42 A1BDT 78 
A1BDT H43 H43 H 0 1 N N N N N N 193.787 190.794 140.061 15.915  0.140  -2.578 H43 A1BDT 79 
A1BDT H44 H44 H 0 1 N N N N N N 190.758 193.887 138.573 16.386  2.533  0.084  H44 A1BDT 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BDT O38 C3  SING N N 1  
A1BDT O37 C4  SING N N 2  
A1BDT C3  C4  DOUB Y N 3  
A1BDT C3  C2  SING Y N 4  
A1BDT C4  C5  SING Y N 5  
A1BDT C2  C1  DOUB Y N 6  
A1BDT C5  C6  DOUB Y N 7  
A1BDT C1  C6  SING Y N 8  
A1BDT C6  C7  SING N N 9  
A1BDT C7  C8  SING N N 10 
A1BDT O10 C9  DOUB N N 11 
A1BDT C8  C9  SING N N 12 
A1BDT C9  N11 SING N N 13 
A1BDT N11 C12 SING N N 14 
A1BDT C12 C13 SING N N 15 
A1BDT C13 C14 SING N N 16 
A1BDT C14 N15 SING N N 17 
A1BDT N15 C16 SING N N 18 
A1BDT C16 C17 SING N N 19 
A1BDT C17 C18 SING N N 20 
A1BDT C18 C19 SING N N 21 
A1BDT C19 N20 SING N N 22 
A1BDT N20 C21 SING N N 23 
A1BDT C21 C22 SING N N 24 
A1BDT C22 C23 SING N N 25 
A1BDT C23 N24 SING N N 26 
A1BDT N24 C25 SING N N 27 
A1BDT C25 O26 DOUB N N 28 
A1BDT C25 C27 SING N N 29 
A1BDT C27 C28 SING N N 30 
A1BDT C28 C29 SING N N 31 
A1BDT C29 C34 DOUB Y N 32 
A1BDT C29 C30 SING Y N 33 
A1BDT C34 C33 SING Y N 34 
A1BDT C30 C31 DOUB Y N 35 
A1BDT C33 C32 DOUB Y N 36 
A1BDT C31 C32 SING Y N 37 
A1BDT C31 O36 SING N N 38 
A1BDT C32 O35 SING N N 39 
A1BDT C17 H1  SING N N 40 
A1BDT C17 H2  SING N N 41 
A1BDT C21 H3  SING N N 42 
A1BDT C21 H4  SING N N 43 
A1BDT C22 H5  SING N N 44 
A1BDT C22 H6  SING N N 45 
A1BDT C28 H7  SING N N 46 
A1BDT C28 H8  SING N N 47 
A1BDT C12 H9  SING N N 48 
A1BDT C12 H10 SING N N 49 
A1BDT C14 H11 SING N N 50 
A1BDT C14 H12 SING N N 51 
A1BDT C16 H13 SING N N 52 
A1BDT C16 H14 SING N N 53 
A1BDT C23 H15 SING N N 54 
A1BDT C23 H16 SING N N 55 
A1BDT N24 H17 SING N N 56 
A1BDT C1  H18 SING N N 57 
A1BDT C13 H19 SING N N 58 
A1BDT C13 H20 SING N N 59 
A1BDT C18 H21 SING N N 60 
A1BDT C18 H22 SING N N 61 
A1BDT C19 H23 SING N N 62 
A1BDT C19 H24 SING N N 63 
A1BDT C2  H25 SING N N 64 
A1BDT C27 H26 SING N N 65 
A1BDT C27 H27 SING N N 66 
A1BDT C30 H28 SING N N 67 
A1BDT C33 H29 SING N N 68 
A1BDT C34 H30 SING N N 69 
A1BDT C5  H31 SING N N 70 
A1BDT C7  H32 SING N N 71 
A1BDT C7  H33 SING N N 72 
A1BDT C8  H34 SING N N 73 
A1BDT C8  H35 SING N N 74 
A1BDT N11 H36 SING N N 75 
A1BDT N15 H37 SING N N 76 
A1BDT N20 H39 SING N N 77 
A1BDT O35 H41 SING N N 78 
A1BDT O36 H42 SING N N 79 
A1BDT O37 H43 SING N N 80 
A1BDT O38 H44 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BDT SMILES           ACDLabs              14.52   "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O"                                                                                                                                              
A1BDT InChI            InChI                1.06    "InChI=1S/C28H42N4O6/c33-23-9-5-21(19-25(23)35)7-11-27(37)31-17-3-15-29-13-1-2-14-30-16-4-18-32-28(38)12-8-22-6-10-24(34)26(36)20-22/h5-6,9-10,19-20,29-30,33-36H,1-4,7-8,11-18H2,(H,31,37)(H,32,38)" 
A1BDT InChIKey         InChI                1.06    IOLDDENZPBFBHV-UHFFFAOYSA-N                                                                                                                                                                           
A1BDT SMILES_CANONICAL CACTVS               3.385   "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O"                                                                                                                                              
A1BDT SMILES           CACTVS               3.385   "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O"                                                                                                                                              
A1BDT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(c(c2)O)O)O)O"                                                                                                                                            
A1BDT SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(c(c2)O)O)O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BDT "SYSTEMATIC NAME" ACDLabs              14.52   "N,N'-[butane-1,4-diylbis(azanediylpropane-3,1-diyl)]bis[3-(3,4-dihydroxyphenyl)propanamide]"                                    
A1BDT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[3,4-bis(oxidanyl)phenyl]-~{N}-[3-[4-[3-[3-[3,4-bis(oxidanyl)phenyl]propanoylamino]propylamino]butylamino]propyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BDT "Create component" 2024-10-15 RCSB 
A1BDT "Initial release"  2024-12-11 RCSB 
# 
