data_A1BEF
# 
_chem_comp.id                                    A1BEF 
_chem_comp.name                                  "5-[(3S)-3,4-dimethylpiperazin-1-yl]-2-methyl-N-{(1R)-1-[(2M)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]ethyl}benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H34 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-28 
_chem_comp.pdbx_modified_date                    2025-01-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.620 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BEF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9DO3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BEF C13  C1  C 0 1 Y N N N N N 48.945 32.004 0.174  -1.642 -2.704 0.025  C13  A1BEF 1  
A1BEF C12  C2  C 0 1 N N N N N N 49.176 30.525 0.074  -0.199 -2.964 0.215  C12  A1BEF 2  
A1BEF C10  C3  C 0 1 N N N N N N 50.762 28.126 2.283  2.334  -2.583 2.115  C10  A1BEF 3  
A1BEF C9   C4  C 0 1 N N R N N N 50.420 28.568 0.864  2.073  -2.200 0.657  C9   A1BEF 4  
A1BEF C8   C5  C 0 1 Y N N N N N 51.509 28.243 -0.148 2.856  -0.959 0.315  C8   A1BEF 5  
A1BEF C7   C6  C 0 1 Y N N N N N 52.790 28.699 0.020  2.284  0.275  0.403  C7   A1BEF 6  
A1BEF C6   C7  C 0 1 Y N N N N N 53.764 28.393 -0.930 3.033  1.417  0.080  C6   A1BEF 7  
A1BEF C1   C8  C 0 1 N N N N N N 57.837 30.990 0.457  2.290  6.356  -0.056 C1   A1BEF 8  
A1BEF C5   C9  C 0 1 Y N N N N N 55.156 28.903 -0.783 2.398  2.753  0.180  C5   A1BEF 9  
A1BEF C4   C10 C 0 1 Y N N N N N 56.315 28.478 -1.458 1.074  3.017  0.584  C4   A1BEF 10 
A1BEF C14  C11 C 0 1 Y N N N N N 47.708 32.505 0.609  -2.495 -3.740 -0.360 C14  A1BEF 11 
A1BEF C15  C12 C 0 1 N N N N N N 46.573 31.609 1.038  -1.946 -5.125 -0.582 C15  A1BEF 12 
A1BEF C16  C13 C 0 1 Y N N N N N 47.562 33.887 0.698  -3.842 -3.494 -0.536 C16  A1BEF 13 
A1BEF C17  C14 C 0 1 Y N N N N N 48.589 34.756 0.379  -4.350 -2.225 -0.334 C17  A1BEF 14 
A1BEF C18  C15 C 0 1 Y N N N N N 49.815 34.269 -0.046 -3.509 -1.187 0.049  C18  A1BEF 15 
A1BEF C20  C16 C 0 1 N N N N N N 52.131 34.553 -0.749 -3.336 1.081  -0.589 C20  A1BEF 16 
A1BEF C21  C17 C 0 1 N N N N N N 53.104 35.645 -1.169 -3.878 2.479  -0.280 C21  A1BEF 17 
A1BEF C23  C18 C 0 1 N N N N N N 53.915 37.906 -0.613 -5.625 2.287  -1.947 C23  A1BEF 18 
A1BEF C24  C19 C 0 1 N N R N N N 51.435 37.483 -0.741 -6.018 1.518  0.316  C24  A1BEF 19 
A1BEF C25  C20 C 0 1 N N N N N N 50.914 38.354 0.389  -5.776 1.845  1.791  C25  A1BEF 20 
A1BEF C26  C21 C 0 1 N N N N N N 50.492 36.338 -1.062 -5.477 0.120  0.007  C26  A1BEF 21 
A1BEF C27  C22 C 0 1 Y N N N N N 49.981 32.886 -0.149 -2.156 -1.425 0.235  C27  A1BEF 22 
A1BEF C29  C23 C 0 1 Y N N N N N 51.209 27.455 -1.301 4.201  -1.044 -0.096 C29  A1BEF 23 
A1BEF C30  C24 C 0 1 Y N N N N N 49.931 26.919 -1.585 4.853  -2.282 -0.203 C30  A1BEF 24 
A1BEF C31  C25 C 0 1 Y N N N N N 49.719 26.168 -2.705 6.154  -2.327 -0.604 C31  A1BEF 25 
A1BEF C32  C26 C 0 1 Y N N N N N 50.754 25.915 -3.590 6.847  -1.158 -0.911 C32  A1BEF 26 
A1BEF C33  C27 C 0 1 Y N N N N N 52.008 26.413 -3.359 6.247  0.060  -0.819 C33  A1BEF 27 
A1BEF C34  C28 C 0 1 Y N N N N N 52.269 27.196 -2.208 4.905  0.147  -0.408 C34  A1BEF 28 
A1BEF C36  C29 C 0 1 Y N N N N N 55.607 29.914 0.033  2.990  3.952  -0.097 C36  A1BEF 29 
A1BEF N11  N1  N 0 1 N N N N N N 50.124 30.004 0.863  0.643  -1.942 0.468  N11  A1BEF 30 
A1BEF N19  N2  N 0 1 N N N N N N 50.860 35.136 -0.312 -4.028 0.094  0.252  N19  A1BEF 31 
A1BEF N2   N3  N 0 1 Y N N N N N 56.927 30.045 -0.171 2.076  4.917  0.119  N2   A1BEF 32 
A1BEF N22  N4  N 0 1 N N N N N N 52.819 36.912 -0.421 -5.327 2.505  -0.525 N22  A1BEF 33 
A1BEF N3   N5  N 0 1 Y N N N N N 57.383 29.165 -1.090 0.889  4.310  0.544  N3   A1BEF 34 
A1BEF N35  N6  N 0 1 Y N N N N N 53.539 27.667 -2.013 4.291  1.329  -0.310 N35  A1BEF 35 
A1BEF O28  O1  O 0 1 N N N N N N 48.514 29.832 -0.694 0.229  -4.100 0.144  O28  A1BEF 36 
A1BEF H10B H1  H 0 0 N N N N N N 49.936 28.391 2.959  1.767  -3.481 2.362  H10B A1BEF 37 
A1BEF H10A H2  H 0 0 N N N N N N 50.916 27.037 2.301  3.398  -2.775 2.255  H10A A1BEF 38 
A1BEF H10C H3  H 0 0 N N N N N N 51.682 28.632 2.613  2.023  -1.767 2.766  H10C A1BEF 39 
A1BEF H9   H4  H 0 1 N N N N N N 49.511 28.029 0.559  2.384  -3.017 0.005  H9   A1BEF 40 
A1BEF H7   H5  H 0 1 N N N N N N 53.045 29.293 0.885  1.256  0.373  0.719  H7   A1BEF 41 
A1BEF H1C  H6  H 0 1 N N N N N N 58.852 30.841 0.061  2.034  6.639  -1.077 H1C  A1BEF 42 
A1BEF H1A  H7  H 0 1 N N N N N N 57.506 32.017 0.241  1.658  6.905  0.643  H1A  A1BEF 43 
A1BEF H1B  H8  H 0 1 N N N N N N 57.841 30.828 1.545  3.336  6.594  0.136  H1B  A1BEF 44 
A1BEF H4   H9  H 0 1 N N N N N N 56.330 27.684 -2.190 0.340  2.281  0.876  H4   A1BEF 45 
A1BEF H15B H10 H 0 0 N N N N N N 46.664 31.389 2.112  -1.875 -5.646 0.373  H15B A1BEF 46 
A1BEF H15A H11 H 0 0 N N N N N N 45.615 32.115 0.847  -2.610 -5.677 -1.248 H15A A1BEF 47 
A1BEF H15C H12 H 0 0 N N N N N N 46.612 30.669 0.467  -0.956 -5.056 -1.033 H15C A1BEF 48 
A1BEF H16  H13 H 0 1 N N N N N N 46.617 34.293 1.027  -4.500 -4.297 -0.834 H16  A1BEF 49 
A1BEF H17  H14 H 0 1 N N N N N N 48.435 35.822 0.462  -5.405 -2.040 -0.473 H17  A1BEF 50 
A1BEF H20A H15 H 0 0 N N N N N N 52.569 33.978 0.080  -3.509 0.849  -1.640 H20A A1BEF 51 
A1BEF H20B H16 H 0 0 N N N N N N 51.947 33.884 -1.603 -2.267 1.052  -0.381 H20B A1BEF 52 
A1BEF H21A H17 H 0 0 N N N N N N 54.132 35.319 -0.951 -3.681 2.723  0.764  H21A A1BEF 53 
A1BEF H21B H18 H 0 0 N N N N N N 52.999 35.829 -2.248 -3.387 3.210  -0.923 H21B A1BEF 54 
A1BEF H23C H19 H 0 0 N N N N N N 53.680 38.824 -0.054 -5.299 1.288  -2.237 H23C A1BEF 55 
A1BEF H23B H20 H 0 0 N N N N N N 54.861 37.484 -0.244 -6.698 2.381  -2.112 H23B A1BEF 56 
A1BEF H23A H21 H 0 0 N N N N N N 54.012 38.143 -1.683 -5.098 3.029  -2.546 H23A A1BEF 57 
A1BEF H24  H22 H 0 1 N N N N N N 51.528 38.110 -1.640 -7.088 1.548  0.108  H24  A1BEF 58 
A1BEF H25B H23 H 0 0 N N N N N N 49.921 38.745 0.123  -4.706 1.816  1.999  H25B A1BEF 59 
A1BEF H25A H24 H 0 0 N N N N N N 50.838 37.755 1.308  -6.161 2.840  2.011  H25A A1BEF 60 
A1BEF H25C H25 H 0 0 N N N N N N 51.606 39.193 0.554  -6.287 1.111  2.414  H25C A1BEF 61 
A1BEF H26B H26 H 0 0 N N N N N N 49.466 36.630 -0.794 -5.967 -0.610 0.650  H26B A1BEF 62 
A1BEF H26A H27 H 0 0 N N N N N N 50.542 36.121 -2.139 -5.674 -0.123 -1.037 H26A A1BEF 63 
A1BEF H27  H28 H 0 1 N N N N N N 50.928 32.490 -0.485 -1.500 -0.619 0.533  H27  A1BEF 64 
A1BEF H30  H29 H 0 1 N N N N N N 49.112 27.107 -0.906 4.326  -3.195 0.033  H30  A1BEF 65 
A1BEF H31  H30 H 0 1 N N N N N N 48.736 25.768 -2.903 6.654  -3.280 -0.686 H31  A1BEF 66 
A1BEF H32  H31 H 0 1 N N N N N N 50.570 25.319 -4.471 7.878  -1.219 -1.227 H32  A1BEF 67 
A1BEF H33  H32 H 0 1 N N N N N N 52.804 26.207 -4.059 6.798  0.956  -1.061 H33  A1BEF 68 
A1BEF H36  H33 H 0 1 N N N N N N 55.007 30.498 0.715  4.007  4.099  -0.429 H36  A1BEF 69 
A1BEF H11  H34 H 0 1 N N N N N N 50.643 30.609 1.467  0.302  -1.036 0.526  H11  A1BEF 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BEF C1  N2   SING N N 1  
A1BEF N2  N3   SING Y N 2  
A1BEF N3  C4   DOUB Y N 3  
A1BEF C4  C5   SING Y N 4  
A1BEF C5  C6   SING N N 5  
A1BEF C6  C7   DOUB Y N 6  
A1BEF C7  C8   SING Y N 7  
A1BEF C8  C9   SING N N 8  
A1BEF C9  C10  SING N N 9  
A1BEF C9  N11  SING N N 10 
A1BEF N11 C12  SING N N 11 
A1BEF C12 C13  SING N N 12 
A1BEF C13 C14  DOUB Y N 13 
A1BEF C14 C15  SING N N 14 
A1BEF C14 C16  SING Y N 15 
A1BEF C16 C17  DOUB Y N 16 
A1BEF C17 C18  SING Y N 17 
A1BEF C18 N19  SING N N 18 
A1BEF N19 C20  SING N N 19 
A1BEF C20 C21  SING N N 20 
A1BEF C21 N22  SING N N 21 
A1BEF N22 C23  SING N N 22 
A1BEF N22 C24  SING N N 23 
A1BEF C24 C25  SING N N 24 
A1BEF C24 C26  SING N N 25 
A1BEF C18 C27  DOUB Y N 26 
A1BEF C12 O28  DOUB N N 27 
A1BEF C8  C29  DOUB Y N 28 
A1BEF C29 C30  SING Y N 29 
A1BEF C30 C31  DOUB Y N 30 
A1BEF C31 C32  SING Y N 31 
A1BEF C32 C33  DOUB Y N 32 
A1BEF C33 C34  SING Y N 33 
A1BEF C34 N35  DOUB Y N 34 
A1BEF C5  C36  DOUB Y N 35 
A1BEF C36 N2   SING Y N 36 
A1BEF N35 C6   SING Y N 37 
A1BEF C27 C13  SING Y N 38 
A1BEF C26 N19  SING N N 39 
A1BEF C34 C29  SING Y N 40 
A1BEF C10 H10B SING N N 41 
A1BEF C10 H10A SING N N 42 
A1BEF C10 H10C SING N N 43 
A1BEF C9  H9   SING N N 44 
A1BEF C7  H7   SING N N 45 
A1BEF C1  H1C  SING N N 46 
A1BEF C1  H1A  SING N N 47 
A1BEF C1  H1B  SING N N 48 
A1BEF C4  H4   SING N N 49 
A1BEF C15 H15B SING N N 50 
A1BEF C15 H15A SING N N 51 
A1BEF C15 H15C SING N N 52 
A1BEF C16 H16  SING N N 53 
A1BEF C17 H17  SING N N 54 
A1BEF C20 H20A SING N N 55 
A1BEF C20 H20B SING N N 56 
A1BEF C21 H21A SING N N 57 
A1BEF C21 H21B SING N N 58 
A1BEF C23 H23C SING N N 59 
A1BEF C23 H23B SING N N 60 
A1BEF C23 H23A SING N N 61 
A1BEF C24 H24  SING N N 62 
A1BEF C25 H25B SING N N 63 
A1BEF C25 H25A SING N N 64 
A1BEF C25 H25C SING N N 65 
A1BEF C26 H26B SING N N 66 
A1BEF C26 H26A SING N N 67 
A1BEF C27 H27  SING N N 68 
A1BEF C30 H30  SING N N 69 
A1BEF C31 H31  SING N N 70 
A1BEF C32 H32  SING N N 71 
A1BEF C33 H33  SING N N 72 
A1BEF C36 H36  SING N N 73 
A1BEF N11 H11  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BEF SMILES           ACDLabs              14.52   "Cn1cc(cn1)c1nc2ccccc2c(c1)C(C)NC(=O)c1cc(ccc1C)N1CC(C)N(C)CC1"                                                                                                                          
A1BEF InChI            InChI                1.06    "InChI=1S/C29H34N6O/c1-19-10-11-23(35-13-12-33(4)20(2)17-35)14-25(19)29(36)31-21(3)26-15-28(22-16-30-34(5)18-22)32-27-9-7-6-8-24(26)27/h6-11,14-16,18,20-21H,12-13,17H2,1-5H3,(H,31,36)" 
A1BEF InChIKey         InChI                1.06    AHNRNMCZXNKZFI-UHFFFAOYSA-N                                                                                                                                                              
A1BEF SMILES_CANONICAL CACTVS               3.385   "C[C@@H]1CN(CCN1C)c2ccc(C)c(c2)C(=O)N[C@H](C)c3cc(nc4ccccc34)c5cnn(C)c5"                                                                                                                 
A1BEF SMILES           CACTVS               3.385   "C[CH]1CN(CCN1C)c2ccc(C)c(c2)C(=O)N[CH](C)c3cc(nc4ccccc34)c5cnn(C)c5"                                                                                                                    
A1BEF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1C(=O)N[C@H](C)c2cc(nc3c2cccc3)c4cnn(c4)C)N5CCN([C@@H](C5)C)C"                                                                                                                 
A1BEF SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1C(=O)NC(C)c2cc(nc3c2cccc3)c4cnn(c4)C)N5CCN(C(C5)C)C"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BEF "SYSTEMATIC NAME" ACDLabs              14.52   "5-[(3S)-3,4-dimethylpiperazin-1-yl]-2-methyl-N-{(1R)-1-[(2M)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]ethyl}benzamide" 
A1BEF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[(3~{R})-3,4-dimethylpiperazin-1-yl]-2-methyl-~{N}-[(1~{R})-1-[2-(1-methylpyrazol-4-yl)quinolin-4-yl]ethyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BEF "Create component" 2024-10-28 RCSB 
A1BEF "Initial release"  2025-01-22 RCSB 
# 
