data_A1D85
# 
_chem_comp.id                                    A1D85 
_chem_comp.name                                  "2-azanyl-5-[2-(1,4-diazepan-1-yl)pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H29 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-11 
_chem_comp.pdbx_modified_date                    2024-09-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        431.530 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1D85 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ZU2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1D85 N1  N1  N 0 1 Y N N N N N 4.460  -19.096 -8.670  3.353  -2.518 -0.204 N1  A1D85 1  
A1D85 N3  N2  N 0 1 N N N N N N 1.774  -18.824 -12.576 7.121  1.193  0.506  N3  A1D85 2  
A1D85 C4  C1  C 0 1 Y N N N N N 8.154  -17.175 -9.707  -0.092 -0.072 -0.156 C4  A1D85 3  
A1D85 C5  C2  C 0 1 Y N N N N N 8.753  -17.516 -10.914 -1.357 -0.658 -0.194 C5  A1D85 4  
A1D85 C6  C3  C 0 1 Y N N N N N 9.913  -16.841 -11.339 -2.495 0.137  -0.179 C6  A1D85 5  
A1D85 C7  C4  C 0 1 Y N N N N N 6.861  -17.880 -9.281  1.120  -0.928 -0.172 C7  A1D85 6  
A1D85 C8  C5  C 0 1 Y N N N N N 6.411  -17.907 -7.940  1.013  -2.323 -0.220 C8  A1D85 7  
A1D85 C10 C6  C 0 1 Y N N N N N 4.840  -19.070 -9.937  3.502  -1.202 -0.159 C10 A1D85 8  
A1D85 C13 C7  C 0 1 N N N N N N 4.145  -19.010 -13.290 7.221  -1.192 0.083  C13 A1D85 9  
A1D85 C15 C8  C 0 1 N N N N N N 1.633  -19.931 -11.667 5.748  1.453  0.598  C15 A1D85 10 
A1D85 C17 C9  C 0 1 Y N N N N N 10.456 -17.330 -12.674 -3.839 -0.489 -0.220 C17 A1D85 11 
A1D85 C20 C10 C 0 1 Y N N N N N 11.322 -18.282 -15.137 -6.350 -1.660 -0.303 C20 A1D85 12 
A1D85 C21 C11 C 0 1 Y N N N N N 10.225 -17.395 -15.074 -5.742 -1.414 0.920  C21 A1D85 13 
A1D85 C22 C12 C 0 1 Y N N N N N 9.790  -16.918 -13.850 -4.487 -0.829 0.965  C22 A1D85 14 
A1D85 C24 C13 C 0 1 N N N N N N 12.272 -18.667 -11.416 -3.764 -0.364 -2.729 C24 A1D85 15 
A1D85 C1  C14 C 0 1 Y N N N N N 10.469 -15.826 -10.561 -2.373 1.532  -0.126 C1  A1D85 16 
A1D85 C2  C15 C 0 1 Y N N N N N 9.843  -15.486 -9.351  -1.099 2.119  -0.087 C2  A1D85 17 
A1D85 C3  C16 C 0 1 Y N N N N N 8.688  -16.144 -8.912  0.038  1.311  -0.108 C3  A1D85 18 
A1D85 C9  C17 C 0 1 Y N N N N N 5.202  -18.537 -7.669  2.161  -3.085 -0.234 C9  A1D85 19 
A1D85 C11 C18 C 0 1 Y N N N N N 6.039  -18.455 -10.316 2.395  -0.364 -0.141 C11 A1D85 20 
A1D85 N2  N3  N 0 1 N N N N N N 3.967  -19.660 -10.906 4.780  -0.655 -0.128 N2  A1D85 21 
A1D85 C12 C19 C 0 1 N N N N N N 4.510  -20.021 -12.189 5.812  -1.711 -0.244 C12 A1D85 22 
A1D85 C14 C20 C 0 1 N N N N N N 2.669  -19.105 -13.664 7.475  0.173  -0.505 C14 A1D85 23 
A1D85 C16 C21 C 0 1 N N N N N N 2.575  -19.772 -10.473 4.948  0.204  1.022  C16 A1D85 24 
A1D85 C18 C22 C 0 1 Y N N N N N 11.548 -18.227 -12.718 -4.459 -0.735 -1.444 C18 A1D85 25 
A1D85 C19 C23 C 0 1 Y N N N N N 11.968 -18.702 -13.958 -5.709 -1.318 -1.480 C19 A1D85 26 
A1D85 O1  O1  O 0 1 N N N N N N 9.549  -16.970 -16.291 -6.376 -1.751 2.074  O1  A1D85 27 
A1D85 C23 C24 C 0 1 N N N N N N 8.603  -15.949 -13.809 -3.825 -0.561 2.292  C23 A1D85 28 
A1D85 N4  N4  N 0 1 N N N N N N 11.639 -15.135 -10.998 -3.506 2.329  -0.112 N4  A1D85 29 
A1D85 C25 C25 C 0 1 N N N N N N 10.418 -14.366 -8.453  -0.962 3.586  -0.030 C25 A1D85 30 
A1D85 N5  N5  N 0 1 N N N N N N 9.602  -13.874 -7.432  0.257  4.153  -0.120 N5  A1D85 31 
A1D85 O2  O2  O 0 1 N N N N N N 11.538 -13.933 -8.639  -1.949 4.284  0.097  O2  A1D85 32 
A1D85 H1  H1  H 0 1 N N N N N N 2.126  -18.037 -12.069 7.505  0.956  1.409  H1  A1D85 33 
A1D85 H3  H3  H 0 1 N N N N N N 8.329  -18.299 -11.526 -1.452 -1.733 -0.235 H3  A1D85 34 
A1D85 H4  H4  H 0 1 N N N N N N 6.990  -17.452 -7.150  0.043  -2.796 -0.245 H4  A1D85 35 
A1D85 H5  H5  H 0 1 N N N N N N 4.755  -19.216 -14.182 7.336  -1.138 1.166  H5  A1D85 36 
A1D85 H6  H6  H 0 1 N N N N N N 4.358  -17.993 -12.928 7.957  -1.891 -0.316 H6  A1D85 37 
A1D85 H7  H7  H 0 1 N N N N N N 0.595  -19.972 -11.305 5.585  2.243  1.331  H7  A1D85 38 
A1D85 H8  H8  H 0 1 N N N N N N 1.874  -20.865 -12.195 5.386  1.793  -0.372 H8  A1D85 39 
A1D85 H9  H9  H 0 1 N N N N N N 11.668 -18.641 -16.095 -7.329 -2.116 -0.336 H9  A1D85 40 
A1D85 H10 H10 H 0 1 N N N N N N 13.094 -17.969 -11.199 -3.162 -1.205 -3.072 H10 A1D85 41 
A1D85 H11 H11 H 0 1 N N N N N N 11.557 -18.663 -10.580 -4.508 -0.117 -3.486 H11 A1D85 42 
A1D85 H12 H12 H 0 1 N N N N N N 12.677 -19.681 -11.547 -3.119 0.498  -2.558 H12 A1D85 43 
A1D85 H13 H13 H 0 1 N N N N N N 8.216  -15.866 -7.981  1.020  1.760  -0.083 H13 A1D85 44 
A1D85 H14 H14 H 0 1 N N N N N N 4.844  -18.585 -6.651  2.085  -4.162 -0.271 H14 A1D85 45 
A1D85 H15 H15 H 0 1 N N N N N N 6.339  -18.413 -11.353 2.520  0.708  -0.104 H15 A1D85 46 
A1D85 H16 H16 H 0 1 N N N N N N 4.117  -21.009 -12.473 5.806  -2.100 -1.262 H16 A1D85 47 
A1D85 H17 H17 H 0 1 N N N N N N 5.606  -20.072 -12.106 5.566  -2.521 0.443  H17 A1D85 48 
A1D85 H18 H18 H 0 1 N N N N N N 2.469  -18.385 -14.472 6.858  0.309  -1.393 H18 A1D85 49 
A1D85 H19 H19 H 0 1 N N N N N N 2.468  -20.125 -14.024 8.528  0.268  -0.768 H19 A1D85 50 
A1D85 H20 H20 H 0 1 N N N N N N 2.299  -18.864 -9.917  5.492  -0.331 1.801  H20 A1D85 51 
A1D85 H21 H21 H 0 1 N N N N N N 2.473  -20.649 -9.817  3.971  0.506  1.398  H21 A1D85 52 
A1D85 H22 H22 H 0 1 N N N N N N 12.793 -19.396 -14.016 -6.187 -1.512 -2.429 H22 A1D85 53 
A1D85 H23 H23 H 0 1 N N N N N N 8.839  -16.379 -16.070 -6.183 -2.647 2.381  H23 A1D85 54 
A1D85 H24 H24 H 0 1 N N N N N N 7.667  -16.519 -13.715 -3.231 -1.427 2.583  H24 A1D85 55 
A1D85 H25 H25 H 0 1 N N N N N N 8.710  -15.275 -12.946 -3.178 0.312  2.205  H25 A1D85 56 
A1D85 H26 H26 H 0 1 N N N N N N 8.580  -15.358 -14.736 -4.589 -0.374 3.047  H26 A1D85 57 
A1D85 H27 H27 H 0 1 N N N N N N 11.893 -14.446 -10.319 -4.382 1.928  -0.219 H27 A1D85 58 
A1D85 H28 H28 H 0 1 N N N N N N 12.389 -15.787 -11.108 -3.422 3.288  0.006  H28 A1D85 59 
A1D85 H29 H29 H 0 1 N N N N N N 9.936  -13.147 -6.832  1.045  3.596  -0.223 H29 A1D85 60 
A1D85 H30 H30 H 0 1 N N N N N N 8.684  -14.249 -7.301  0.347  5.118  -0.083 H30 A1D85 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1D85 O1  C21 SING N N 1  
A1D85 C20 C21 DOUB Y N 2  
A1D85 C20 C19 SING Y N 3  
A1D85 C21 C22 SING Y N 4  
A1D85 C19 C18 DOUB Y N 5  
A1D85 C22 C23 SING N N 6  
A1D85 C22 C17 DOUB Y N 7  
A1D85 C14 C13 SING N N 8  
A1D85 C14 N3  SING N N 9  
A1D85 C13 C12 SING N N 10 
A1D85 C18 C17 SING Y N 11 
A1D85 C18 C24 SING N N 12 
A1D85 C17 C6  SING N N 13 
A1D85 N3  C15 SING N N 14 
A1D85 C12 N2  SING N N 15 
A1D85 C15 C16 SING N N 16 
A1D85 C6  C5  DOUB Y N 17 
A1D85 C6  C1  SING Y N 18 
A1D85 N4  C1  SING N N 19 
A1D85 C5  C4  SING Y N 20 
A1D85 N2  C16 SING N N 21 
A1D85 N2  C10 SING N N 22 
A1D85 C1  C2  DOUB Y N 23 
A1D85 C11 C10 DOUB Y N 24 
A1D85 C11 C7  SING Y N 25 
A1D85 C10 N1  SING Y N 26 
A1D85 C4  C7  SING N N 27 
A1D85 C4  C3  DOUB Y N 28 
A1D85 C2  C3  SING Y N 29 
A1D85 C2  C25 SING N N 30 
A1D85 C7  C8  DOUB Y N 31 
A1D85 N1  C9  DOUB Y N 32 
A1D85 O2  C25 DOUB N N 33 
A1D85 C25 N5  SING N N 34 
A1D85 C8  C9  SING Y N 35 
A1D85 N3  H1  SING N N 36 
A1D85 C5  H3  SING N N 37 
A1D85 C8  H4  SING N N 38 
A1D85 C13 H5  SING N N 39 
A1D85 C13 H6  SING N N 40 
A1D85 C15 H7  SING N N 41 
A1D85 C15 H8  SING N N 42 
A1D85 C20 H9  SING N N 43 
A1D85 C24 H10 SING N N 44 
A1D85 C24 H11 SING N N 45 
A1D85 C24 H12 SING N N 46 
A1D85 C3  H13 SING N N 47 
A1D85 C9  H14 SING N N 48 
A1D85 C11 H15 SING N N 49 
A1D85 C12 H16 SING N N 50 
A1D85 C12 H17 SING N N 51 
A1D85 C14 H18 SING N N 52 
A1D85 C14 H19 SING N N 53 
A1D85 C16 H20 SING N N 54 
A1D85 C16 H21 SING N N 55 
A1D85 C19 H22 SING N N 56 
A1D85 O1  H23 SING N N 57 
A1D85 C23 H24 SING N N 58 
A1D85 C23 H25 SING N N 59 
A1D85 C23 H26 SING N N 60 
A1D85 N4  H27 SING N N 61 
A1D85 N4  H28 SING N N 62 
A1D85 N5  H29 SING N N 63 
A1D85 N5  H30 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1D85 InChI            InChI                1.06  "InChI=1S/C25H29N5O2/c1-15-4-5-21(31)16(2)23(15)19-12-18(13-20(24(19)26)25(27)32)17-6-8-29-22(14-17)30-10-3-7-28-9-11-30/h4-6,8,12-14,28,31H,3,7,9-11,26H2,1-2H3,(H2,27,32)" 
A1D85 InChIKey         InChI                1.06  CKVRYWYZRXYQOU-UHFFFAOYSA-N                                                                                                                                                  
A1D85 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(O)c(C)c1c2cc(cc(C(N)=O)c2N)c3ccnc(c3)N4CCCNCC4"                                                                                                                      
A1D85 SMILES           CACTVS               3.385 "Cc1ccc(O)c(C)c1c2cc(cc(C(N)=O)c2N)c3ccnc(c3)N4CCCNCC4"                                                                                                                      
A1D85 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1c2cc(cc(c2N)C(=O)N)c3ccnc(c3)N4CCCNCC4)C)O"                                                                                                                      
A1D85 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1c2cc(cc(c2N)C(=O)N)c3ccnc(c3)N4CCCNCC4)C)O"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           A1D85 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-azanyl-5-[2-(1,4-diazepan-1-yl)pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1D85 "Create component" 2024-06-11 PDBC 
A1D85 "Initial release"  2024-09-11 RCSB 
# 
