data_A1H04
# 
_chem_comp.id                                    A1H04 
_chem_comp.name                                  "[(5~{S})-5-azanyl-4-[[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]methyl]-6-oxidanyl-6-oxidanylidene-hexyl]-$l^{3}-oxidanyl-bis(oxidanyl)boron" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H27 B N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2023-12-20 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        320.170 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1H04 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RIM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1H04 C1  C1  C 0  1 N N N N N N -33.964 -21.215 -5.607  6.083  0.716  -0.956 C1  A1H04 1  
A1H04 C2  C2  C 0  1 N N N N N N -35.426 -19.740 -4.205  4.920  0.302  1.215  C2  A1H04 2  
A1H04 C3  C3  C 0  1 N N N N N N -34.294 -19.766 -5.243  4.735  0.415  -0.299 C3  A1H04 3  
A1H04 O5  O1  O 0  1 N N N N N N -32.160 -16.913 -5.490  2.128  1.786  1.085  O5  A1H04 4  
A1H04 C7  C4  C 0  1 N N N N N N -32.592 -17.994 -5.861  2.425  1.250  0.038  C7  A1H04 5  
A1H04 C12 C5  C 0  1 N N N N N N -32.379 -17.372 -8.292  0.276  0.103  0.084  C12 A1H04 6  
A1H04 C13 C6  C 0  1 N N N N N N -30.569 -14.472 -11.156 -4.123 -0.033 0.190  C13 A1H04 7  
A1H04 C14 C7  C 0  1 N N N N N N -31.575 -19.632 -10.630 0.284  -2.813 0.587  C14 A1H04 8  
A1H04 C15 C8  C 0  1 N N S N N N -30.944 -19.224 -9.320  0.244  -2.233 -0.803 C15 A1H04 9  
A1H04 C16 C9  C 0  1 N N S N N N -31.043 -17.718 -8.979  -0.500 -0.896 -0.777 C16 A1H04 10 
A1H04 N4  N1  N 0  1 N N N N N N -33.032 -18.474 -3.469  4.282  2.812  -0.084 N4  A1H04 11 
A1H04 C6  C10 C 0  1 N N S N N N -32.990 -19.042 -4.832  3.753  1.547  -0.609 C6  A1H04 12 
A1H04 O8  O2  O 0  1 N N N N N N -28.684 -13.169 -10.351 -4.361 2.277  0.884  O8  A1H04 13 
A1H04 O9  O3  O 0  1 N N N N N N -29.764 -12.250 -11.976 -4.960 1.764  -1.205 O9  A1H04 14 
A1H04 B10 B1  B -1 1 N N N N N N -29.935 -13.016 -10.855 -4.949 1.330  0.092  B10 A1H04 15 
A1H04 N11 N2  N 0  1 N N N N N N -32.709 -18.286 -7.183  1.567  0.391  -0.546 N11 A1H04 16 
A1H04 C17 C11 C 0  1 N N N N N N -30.785 -16.815 -10.197 -1.896 -1.102 -0.187 C17 A1H04 17 
A1H04 C18 C12 C 0  1 N N N N N N -30.739 -15.317 -9.871  -2.687 0.205  -0.281 C18 A1H04 18 
A1H04 O19 O4  O 0  1 N N N N N N -32.882 -19.413 -10.835 1.186  -2.366 1.475  O19 A1H04 19 
A1H04 O20 O5  O 0  1 N N N N N N -30.906 -20.160 -11.492 -0.496 -3.680 0.902  O20 A1H04 20 
A1H04 N21 N3  N 0  1 N N N N N N -29.561 -19.706 -9.277  -0.451 -3.163 -1.703 N21 A1H04 21 
A1H04 O22 O6  O 0  1 N N N N N N -30.726 -12.321 -9.973  -6.232 1.117  0.512  O22 A1H04 22 
A1H04 H1  H1  H 0  1 N N N N N N -34.886 -21.739 -5.901  6.476  1.655  -0.567 H1  A1H04 23 
A1H04 H2  H2  H 0  1 N N N N N N -33.251 -21.229 -6.445  6.783  -0.090 -0.735 H2  A1H04 24 
A1H04 H3  H3  H 0  1 N N N N N N -33.518 -21.719 -4.737  5.952  0.797  -2.036 H3  A1H04 25 
A1H04 H4  H4  H 0  1 N N N N N N -35.662 -18.698 -3.945  5.620  -0.504 1.436  H4  A1H04 26 
A1H04 H5  H5  H 0  1 N N N N N N -36.320 -20.224 -4.625  5.313  1.241  1.605  H5  A1H04 27 
A1H04 H6  H6  H 0  1 N N N N N N -35.107 -20.280 -3.301  3.960  0.087  1.684  H6  A1H04 28 
A1H04 H7  H7  H 0  1 N N N N N N -34.669 -19.274 -6.152  4.342  -0.524 -0.688 H7  A1H04 29 
A1H04 H8  H8  H 0  1 N N N N N N -32.315 -16.348 -7.895  -0.298 1.026  0.175  H8  A1H04 30 
A1H04 H9  H9  H 0  1 N N N N N N -33.183 -17.425 -9.041  0.441  -0.322 1.074  H9  A1H04 31 
A1H04 H10 H10 H 0  1 N N N N N N -31.555 -14.338 -11.624 -4.115 -0.379 1.223  H10 A1H04 32 
A1H04 H11 H11 H 0  1 N N N N N N -29.905 -15.011 -11.848 -4.592 -0.788 -0.442 H11 A1H04 33 
A1H04 H12 H12 H 0  1 N N N N N N -31.495 -19.753 -8.529  1.262  -2.075 -1.160 H12 A1H04 34 
A1H04 H14 H14 H 0  1 N N N N N N -33.296 -19.186 -2.819  3.683  3.586  -0.333 H14 A1H04 35 
A1H04 H15 H15 H 0  1 N N N N N N -32.128 -18.120 -3.227  4.413  2.763  0.915  H15 A1H04 36 
A1H04 H17 H17 H 0  1 N N N N N N -32.198 -19.805 -4.839  3.621  1.628  -1.688 H17 A1H04 37 
A1H04 H18 H18 H 0  1 N N N N N N -28.722 -13.696 -9.562  -3.447 2.479  0.642  H18 A1H04 38 
A1H04 H20 H20 H 0  1 N N N N N N -33.047 -19.196 -7.424  1.804  -0.037 -1.383 H20 A1H04 39 
A1H04 H21 H21 H 0  1 N N N N N N -31.589 -16.984 -10.928 -2.415 -1.881 -0.744 H21 A1H04 40 
A1H04 H22 H22 H 0  1 N N N N N N -29.820 -17.101 -10.640 -1.809 -1.399 0.858  H22 A1H04 41 
A1H04 H23 H23 H 0  1 N N N N N N -29.891 -15.122 -9.198  -2.696 0.551  -1.314 H23 A1H04 42 
A1H04 H24 H24 H 0  1 N N N N N N -31.677 -15.029 -9.373  -2.218 0.960  0.351  H24 A1H04 43 
A1H04 H25 H25 H 0  1 N N N N N N -33.125 -19.727 -11.698 1.173  -2.769 2.354  H25 A1H04 44 
A1H04 H26 H26 H 0  1 N N N N N N -29.141 -19.437 -8.410  0.070  -4.020 -1.809 H26 A1H04 45 
A1H04 H27 H27 H 0  1 N N N N N N -29.553 -20.703 -9.356  -1.388 -3.347 -1.378 H27 A1H04 46 
A1H04 H29 H29 H 0  1 N N N N N N -30.856 -12.839 -9.187  -6.711 0.456  -0.006 H29 A1H04 47 
A1H04 H16 H16 H 0  1 N N N N N N -29.390 -11.411 -11.733 -5.445 2.590  -1.339 H16 A1H04 48 
A1H04 H13 H13 H 0  1 N N N N N N -30.247 -17.505 -8.251  -0.588 -0.509 -1.793 H13 A1H04 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1H04 O9  B10 SING N N 1  
A1H04 O20 C14 DOUB N N 2  
A1H04 C13 B10 SING N N 3  
A1H04 C13 C18 SING N N 4  
A1H04 B10 O8  SING N N 5  
A1H04 B10 O22 SING N N 6  
A1H04 O19 C14 SING N N 7  
A1H04 C14 C15 SING N N 8  
A1H04 C17 C18 SING N N 9  
A1H04 C17 C16 SING N N 10 
A1H04 C15 N21 SING N N 11 
A1H04 C15 C16 SING N N 12 
A1H04 C16 C12 SING N N 13 
A1H04 C12 N11 SING N N 14 
A1H04 N11 C7  SING N N 15 
A1H04 C7  O5  DOUB N N 16 
A1H04 C7  C6  SING N N 17 
A1H04 C1  C3  SING N N 18 
A1H04 C3  C6  SING N N 19 
A1H04 C3  C2  SING N N 20 
A1H04 C6  N4  SING N N 21 
A1H04 C1  H1  SING N N 22 
A1H04 C1  H2  SING N N 23 
A1H04 C1  H3  SING N N 24 
A1H04 C2  H4  SING N N 25 
A1H04 C2  H5  SING N N 26 
A1H04 C2  H6  SING N N 27 
A1H04 C3  H7  SING N N 28 
A1H04 C12 H8  SING N N 29 
A1H04 C12 H9  SING N N 30 
A1H04 C13 H10 SING N N 31 
A1H04 C13 H11 SING N N 32 
A1H04 C15 H12 SING N N 33 
A1H04 N4  H14 SING N N 34 
A1H04 N4  H15 SING N N 35 
A1H04 C6  H17 SING N N 36 
A1H04 O8  H18 SING N N 37 
A1H04 N11 H20 SING N N 38 
A1H04 C17 H21 SING N N 39 
A1H04 C17 H22 SING N N 40 
A1H04 C18 H23 SING N N 41 
A1H04 C18 H24 SING N N 42 
A1H04 O19 H25 SING N N 43 
A1H04 N21 H26 SING N N 44 
A1H04 N21 H27 SING N N 45 
A1H04 O22 H29 SING N N 46 
A1H04 O9  H16 SING N N 47 
A1H04 C16 H13 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1H04 InChI            InChI                1.06  "InChI=1S/C12H27BN3O6/c1-7(2)9(14)11(17)16-6-8(10(15)12(18)19)4-3-5-13(20,21)22/h7-10,20-22H,3-6,14-15H2,1-2H3,(H,16,17)(H,18,19)/q-1/t8-,9-,10-/m0/s1" 
A1H04 InChIKey         InChI                1.06  OFEFMXQRUGBNSS-GUBZILKMSA-N                                                                                                                             
A1H04 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](N)C(=O)NC[C@H](CCC[B-](O)(O)O)[C@H](N)C(O)=O"                                                                                               
A1H04 SMILES           CACTVS               3.385 "CC(C)[CH](N)C(=O)NC[CH](CCC[B-](O)(O)O)[CH](N)C(O)=O"                                                                                                  
A1H04 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-](CCC[C@@H](CNC(=O)[C@H](C(C)C)N)[C@@H](C(=O)O)N)(O)(O)O"                                                                                           
A1H04 SMILES           "OpenEye OEToolkits" 2.0.7 "[B-](CCCC(CNC(=O)C(C(C)C)N)C(C(=O)O)N)(O)(O)O"                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           A1H04 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(4~{S},5~{S})-5-azanyl-4-[[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]methyl]-6-oxidanyl-6-oxidanylidene-hexyl]-tris(oxidanyl)boranuide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1H04 "Create component" 2023-12-20 PDBE 
A1H04 "Modify formula"   2024-07-18 PDBE 
A1H04 "Initial release"  2024-11-27 RCSB 
# 
