data_A1H5Y
# 
_chem_comp.id                                    A1H5Y 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-2,3-bis(oxidanyl)propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H23 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-03-11 
_chem_comp.pdbx_modified_date                    2024-11-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        381.380 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1H5Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9EMR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1H5Y C4  C1  C 0 1 N N S N N N -11.120 15.103 26.593 0.315  -0.959 -1.809 C4  A1H5Y 1  
A1H5Y C5  C2  C 0 1 N N R N N N -10.263 15.464 25.384 1.048  0.338  -1.457 C5  A1H5Y 2  
A1H5Y C6  C3  C 0 1 N N N N N N -9.916  16.914 25.305 0.582  1.457  -2.391 C6  A1H5Y 3  
A1H5Y N2  N1  N 0 1 Y N N N N N -9.398  12.867 27.783 -0.990 -1.401 0.768  N2  A1H5Y 4  
A1H5Y C3  C4  C 0 1 N N R N N N -11.429 13.623 26.567 0.742  -2.058 -0.831 C3  A1H5Y 5  
A1H5Y C1  C5  C 0 1 N N S N N N -9.340  13.241 25.319 1.180  -0.273 0.858  C1  A1H5Y 6  
A1H5Y C2  C6  C 0 1 N N S N N N -10.156 12.799 26.513 0.452  -1.595 0.600  C2  A1H5Y 7  
A1H5Y CAM C7  C 0 1 N N N N N N -9.345  13.208 23.005 3.374  0.635  1.185  CAM A1H5Y 8  
A1H5Y CAN C8  C 0 1 N N S N N N -10.359 13.072 21.790 4.859  0.308  1.020  CAN A1H5Y 9  
A1H5Y CAO C9  C 0 1 N N N N N N -11.468 14.043 22.024 5.700  1.444  1.605  CAO A1H5Y 10 
A1H5Y CAR C10 C 0 1 Y N N N N N -8.482  13.711 28.243 -1.680 -0.283 0.447  CAR A1H5Y 11 
A1H5Y CAS C11 C 0 1 Y N N N N N -8.195  13.257 29.459 -2.983 -0.539 0.762  CAS A1H5Y 12 
A1H5Y CAV C12 C 0 1 Y N N N N N -7.315  13.789 30.331 -4.137 0.379  0.595  CAV A1H5Y 13 
A1H5Y CAW C13 C 0 1 Y N N N N N -7.262  13.312 31.635 -5.416 -0.032 0.966  CAW A1H5Y 14 
A1H5Y CAX C14 C 0 1 Y N N N N N -6.366  13.857 32.554 -6.486 0.826  0.808  CAX A1H5Y 15 
A1H5Y CAY C15 C 0 1 Y N N N N N -5.521  14.884 32.156 -6.291 2.090  0.283  CAY A1H5Y 16 
A1H5Y CAZ C16 C 0 1 Y N N N N N -5.573  15.367 30.852 -5.024 2.503  -0.087 CAZ A1H5Y 17 
A1H5Y CBA C17 C 0 1 Y N N N N N -6.471  14.824 29.943 -3.945 1.656  0.072  CBA A1H5Y 18 
A1H5Y NAT N2  N 0 1 Y N N N N N -8.917  12.188 29.693 -3.010 -1.791 1.254  NAT A1H5Y 19 
A1H5Y NAU N3  N 0 1 Y N N N N N -9.624  11.980 28.665 -1.816 -2.267 1.242  NAU A1H5Y 20 
A1H5Y O1  O1  O 0 1 N N N N N N -10.114 12.935 24.151 2.590  -0.476 0.745  O1  A1H5Y 21 
A1H5Y O3  O2  O 0 1 N N N N N N -12.196 13.308 27.725 0.008  -3.253 -1.105 O3  A1H5Y 22 
A1H5Y O4  O3  O 0 1 N N N N N N -12.369 15.799 26.582 0.646  -1.349 -3.143 O4  A1H5Y 23 
A1H5Y O5  O4  O 0 1 N N N N N N -9.038  14.667 25.390 0.760  0.696  -0.104 O5  A1H5Y 24 
A1H5Y O6  O5  O 0 1 N N N N N N -9.069  17.169 26.534 1.348  2.637  -2.141 O6  A1H5Y 25 
A1H5Y OAP O6  O 0 1 N N N N N N -12.362 13.875 20.828 7.083  1.088  1.557  OAP A1H5Y 26 
A1H5Y OAQ O7  O 0 1 N N N N N N -10.873 11.718 21.751 5.163  0.157  -0.368 OAQ A1H5Y 27 
A1H5Y H41 H1  H 0 1 N N N N N N -10.561 15.338 27.510 -0.761 -0.801 -1.732 H41 A1H5Y 28 
A1H5Y H5  H2  H 0 1 N N N N N N -10.838 15.205 24.483 2.122  0.192  -1.574 H5  A1H5Y 29 
A1H5Y H62 H3  H 0 1 N N N N N N -9.346  17.128 24.389 0.721  1.147  -3.427 H62 A1H5Y 30 
A1H5Y H61 H4  H 0 1 N N N N N N -10.825 17.533 25.324 -0.473 1.664  -2.212 H61 A1H5Y 31 
A1H5Y H31 H5  H 0 1 N N N N N N -12.019 13.407 25.664 1.809  -2.252 -0.944 H31 A1H5Y 32 
A1H5Y H1  H6  H 0 1 N N N N N N -8.401  12.669 25.303 0.943  0.083  1.860  H1  A1H5Y 33 
A1H5Y H2  H7  H 0 1 N N N N N N -10.447 11.751 26.347 0.803  -2.348 1.305  H2  A1H5Y 34 
A1H5Y HAM H8  H 0 1 N N N N N N -8.525  12.482 22.907 3.161  0.837  2.235  HAM A1H5Y 35 
A1H5Y H63 H9  H 0 1 N N N N N N -8.930  14.226 23.051 3.127  1.513  0.588  H63 A1H5Y 36 
A1H5Y HAN H10 H 0 1 N N N N N N -9.831  13.317 20.856 5.088  -0.620 1.544  HAN A1H5Y 37 
A1H5Y HAO H11 H 0 1 N N N N N N -11.081 15.071 22.081 5.538  2.352  1.024  HAO A1H5Y 38 
A1H5Y H64 H12 H 0 1 N N N N N N -12.008 13.803 22.952 5.406  1.618  2.640  H64 A1H5Y 39 
A1H5Y HAR H13 H 0 1 N N N N N N -8.064  14.572 27.742 -1.280 0.628  0.026  HAR A1H5Y 40 
A1H5Y HAW H14 H 0 1 N N N N N N -7.921  12.512 31.939 -5.569 -1.019 1.376  HAW A1H5Y 41 
A1H5Y HAX H15 H 0 1 N N N N N N -6.330  13.483 33.567 -7.478 0.509  1.096  HAX A1H5Y 42 
A1H5Y HAY H16 H 0 1 N N N N N N -4.821  15.309 32.860 -7.131 2.758  0.161  HAY A1H5Y 43 
A1H5Y HAZ H17 H 0 1 N N N N N N -4.914  16.166 30.546 -4.877 3.491  -0.498 HAZ A1H5Y 44 
A1H5Y HBA H18 H 0 1 N N N N N N -6.514  15.206 28.934 -2.956 1.980  -0.213 HBA A1H5Y 45 
A1H5Y H32 H19 H 0 1 N N N N N N -12.986 13.836 27.735 0.139  -3.599 -1.999 H32 A1H5Y 46 
A1H5Y H42 H20 H 0 1 N N N N N N -12.876 15.552 27.346 0.405  -0.696 -3.815 H42 A1H5Y 47 
A1H5Y H65 H21 H 0 1 N N N N N N -8.806  18.082 26.554 1.106  3.389  -2.699 H65 A1H5Y 48 
A1H5Y HAP H22 H 0 1 N N N N N N -13.103 14.466 20.900 7.676  1.764  1.912  HAP A1H5Y 49 
A1H5Y HAQ H23 H 0 1 N N N N N N -10.157 11.111 21.602 4.984  0.946  -0.898 HAQ A1H5Y 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1H5Y OAP CAO SING N N 1  
A1H5Y OAQ CAN SING N N 2  
A1H5Y CAN CAO SING N N 3  
A1H5Y CAN CAM SING N N 4  
A1H5Y CAM O1  SING N N 5  
A1H5Y O1  C1  SING N N 6  
A1H5Y C6  C5  SING N N 7  
A1H5Y C6  O6  SING N N 8  
A1H5Y C1  O5  SING N N 9  
A1H5Y C1  C2  SING N N 10 
A1H5Y C5  O5  SING N N 11 
A1H5Y C5  C4  SING N N 12 
A1H5Y C2  C3  SING N N 13 
A1H5Y C2  N2  SING N N 14 
A1H5Y C3  C4  SING N N 15 
A1H5Y C3  O3  SING N N 16 
A1H5Y O4  C4  SING N N 17 
A1H5Y N2  CAR SING Y N 18 
A1H5Y N2  NAU SING Y N 19 
A1H5Y CAR CAS DOUB Y N 20 
A1H5Y NAU NAT DOUB Y N 21 
A1H5Y CAS NAT SING Y N 22 
A1H5Y CAS CAV SING N N 23 
A1H5Y CBA CAV DOUB Y N 24 
A1H5Y CBA CAZ SING Y N 25 
A1H5Y CAV CAW SING Y N 26 
A1H5Y CAZ CAY DOUB Y N 27 
A1H5Y CAW CAX DOUB Y N 28 
A1H5Y CAY CAX SING Y N 29 
A1H5Y C4  H41 SING N N 30 
A1H5Y C5  H5  SING N N 31 
A1H5Y C6  H62 SING N N 32 
A1H5Y C6  H61 SING N N 33 
A1H5Y C3  H31 SING N N 34 
A1H5Y C1  H1  SING N N 35 
A1H5Y C2  H2  SING N N 36 
A1H5Y CAM HAM SING N N 37 
A1H5Y CAM H63 SING N N 38 
A1H5Y CAN HAN SING N N 39 
A1H5Y CAO HAO SING N N 40 
A1H5Y CAO H64 SING N N 41 
A1H5Y CAR HAR SING N N 42 
A1H5Y CAW HAW SING N N 43 
A1H5Y CAX HAX SING N N 44 
A1H5Y CAY HAY SING N N 45 
A1H5Y CAZ HAZ SING N N 46 
A1H5Y CBA HBA SING N N 47 
A1H5Y O3  H32 SING N N 48 
A1H5Y O4  H42 SING N N 49 
A1H5Y O6  H65 SING N N 50 
A1H5Y OAP HAP SING N N 51 
A1H5Y OAQ HAQ SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1H5Y InChI            InChI                1.06  "InChI=1S/C17H23N3O7/c21-7-11(23)9-26-17-14(16(25)15(24)13(8-22)27-17)20-6-12(18-19-20)10-4-2-1-3-5-10/h1-6,11,13-17,21-25H,7-9H2/t11-,13+,14-,15+,16+,17-/m0/s1" 
A1H5Y InChIKey         InChI                1.06  GSGMTGQMFKHBQW-RLKGDUNQSA-N                                                                                                                                       
A1H5Y SMILES_CANONICAL CACTVS               3.385 "OC[C@H](O)CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1n2cc(nn2)c3ccccc3"                                                                                           
A1H5Y SMILES           CACTVS               3.385 "OC[CH](O)CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1n2cc(nn2)c3ccccc3"                                                                                                   
A1H5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(nn2)[C@H]3[C@H]([C@@H]([C@H](O[C@@H]3OC[C@H](CO)O)CO)O)O"                                                                                         
A1H5Y SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(nn2)C3C(C(C(OC3OCC(CO)O)CO)O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           A1H5Y 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-2,3-bis(oxidanyl)propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1H5Y "Create component" 2024-03-11 PDBE 
A1H5Y "Initial release"  2024-11-13 RCSB 
# 
