data_A1IC0
# 
_chem_comp.id                                    A1IC0 
_chem_comp.name                                  "(2~{R},3~{R},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-2-(hydroxymethyl)-4-methoxy-oxolan-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H19 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-04 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        309.321 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     A1IC0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9F67 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IC0 N6     N1  N 0 1 N N N N N N 161.248 122.479 127.399 4.596  -0.909 -0.295 N11 A1IC0 1  
A1IC0 "O4'"  O1  O 0 1 N N N N N N 160.524 119.237 132.919 -2.264 -1.160 0.500  O18 A1IC0 2  
A1IC0 "O3'"  O2  O 0 1 N N N N N N 162.399 116.598 133.708 -4.209 1.684  -0.320 O20 A1IC0 3  
A1IC0 "O2'"  O3  O 0 1 N N N N N N 163.947 118.350 132.486 -1.743 2.288  -0.118 O19 A1IC0 4  
A1IC0 N7     N2  N 0 1 Y N N N N N 162.148 121.993 130.012 1.634  -1.661 -0.637 N10 A1IC0 5  
A1IC0 "O5'"  O4  O 0 1 N N N N N N 159.907 116.684 135.191 -4.751 -2.653 0.769  O17 A1IC0 6  
A1IC0 C4     C1  C 0 1 Y N N N N N 161.196 120.072 129.922 1.167  0.163  0.540  C37 A1IC0 7  
A1IC0 C9     C2  C 0 1 N N N N N N 161.666 122.449 125.990 4.470  -1.085 -1.748 C38 A1IC0 8  
A1IC0 "C3'"  C3  C 0 1 N N R N N N 162.151 117.936 134.009 -3.389 0.566  -0.669 C39 A1IC0 9  
A1IC0 "C4'"  C4  C 0 1 N N R N N N 160.710 118.101 133.770 -3.579 -0.582 0.347  C36 A1IC0 10 
A1IC0 "C5'"  C5  C 0 1 N N N N N N 160.090 118.030 135.124 -4.557 -1.622 -0.202 C35 A1IC0 11 
A1IC0 C10    C6  C 0 1 N N N N N N 161.131 123.728 128.166 5.874  -0.273 0.049  C01 A1IC0 12 
A1IC0 C6     C7  C 0 1 Y N N N N N 160.965 121.330 128.004 3.530  -0.186 0.211  C02 A1IC0 13 
A1IC0 C2     C8  C 0 1 Y N N N N N 159.987 119.193 128.096 2.723  1.623  1.395  C03 A1IC0 14 
A1IC0 C5     C9  C 0 1 Y N N N N N 161.429 121.186 129.240 2.207  -0.612 0.002  C04 A1IC0 15 
A1IC0 C8     C10 C 0 1 Y N N N N N 162.362 121.382 131.175 0.340  -1.580 -0.526 C05 A1IC0 16 
A1IC0 "C1'"  C11 C 0 1 N N R N N N 161.657 119.082 132.076 -1.356 -0.038 0.529  C06 A1IC0 17 
A1IC0 "C2'"  C12 C 0 1 N N R N N N 162.803 118.916 133.065 -1.893 0.933  -0.546 C07 A1IC0 18 
A1IC0 C08    C13 C 0 1 N N N N N N 164.875 119.392 132.181 -1.555 3.218  -1.186 C08 A1IC0 19 
A1IC0 N9     N3  N 0 1 Y N N N N N 161.771 120.194 131.111 0.002  -0.471 0.192  N01 A1IC0 20 
A1IC0 N3     N4  N 0 1 Y N N N N N 160.488 119.069 129.389 1.469  1.263  1.224  N08 A1IC0 21 
A1IC0 N1     N5  N 0 1 Y N N N N N 160.248 120.374 127.401 3.734  0.928  0.907  N09 A1IC0 22 
A1IC0 "HO'3" H1  H 0 1 N N N N N N 161.959 116.044 134.342 -5.158 1.500  -0.349 H1  A1IC0 23 
A1IC0 "H5'"  H2  H 0 1 N N N N N N 159.506 116.460 136.022 -5.361 -3.348 0.488  H2  A1IC0 24 
A1IC0 H91    H3  H 0 1 N N N N N N 161.861 123.474 125.643 4.449  -0.109 -2.232 H3  A1IC0 25 
A1IC0 H92    H4  H 0 1 N N N N N N 162.582 121.848 125.892 5.320  -1.657 -2.120 H4  A1IC0 26 
A1IC0 H93    H5  H 0 1 N N N N N N 160.867 122.001 125.380 3.546  -1.621 -1.971 H5  A1IC0 27 
A1IC0 "H3'"  H6  H 0 1 N N N N N N 162.407 118.180 135.051 -3.620 0.225  -1.678 H6  A1IC0 28 
A1IC0 "H4'"  H7  H 0 1 N N N N N N 160.370 117.213 133.217 -3.934 -0.191 1.300  H7  A1IC0 29 
A1IC0 "H5'1" H8  H 0 1 N N N N N N 160.767 118.396 135.910 -4.152 -2.056 -1.116 H8  A1IC0 30 
A1IC0 "H5'2" H9  H 0 1 N N N N N N 159.139 118.581 135.174 -5.512 -1.144 -0.419 H9  A1IC0 31 
A1IC0 H101   H10 H 0 1 N N N N N N 160.804 123.500 129.191 5.973  -0.219 1.133  H10 A1IC0 32 
A1IC0 H102   H11 H 0 1 N N N N N N 162.108 124.233 128.196 6.695  -0.862 -0.361 H11 A1IC0 33 
A1IC0 H103   H12 H 0 1 N N N N N N 160.393 124.386 127.684 5.905  0.732  -0.370 H12 A1IC0 34 
A1IC0 H2     H13 H 0 1 N N N N N N 159.413 118.398 127.644 2.934  2.523  1.955  H13 A1IC0 35 
A1IC0 H8     H14 H 0 1 N N N N N N 162.914 121.778 132.015 -0.363 -2.287 -0.942 H14 A1IC0 36 
A1IC0 "H1'"  H15 H 0 1 N N N N N N 161.561 118.142 131.512 -1.371 0.437  1.510  H15 A1IC0 37 
A1IC0 "H2'"  H16 H 0 1 N N N N N N 163.016 119.867 133.575 -1.380 0.774  -1.495 H16 A1IC0 38 
A1IC0 H17    H17 H 0 1 N N N N N N 165.777 118.958 131.726 -0.656 2.955  -1.743 H17 A1IC0 39 
A1IC0 H18    H18 H 0 1 N N N N N N 164.413 120.100 131.477 -2.417 3.185  -1.853 H18 A1IC0 40 
A1IC0 H19    H19 H 0 1 N N N N N N 165.149 119.921 133.106 -1.449 4.223  -0.779 H19 A1IC0 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IC0 C9    N6     SING N N 1  
A1IC0 N6    C6     SING N N 2  
A1IC0 N6    C10    SING N N 3  
A1IC0 N1    C6     DOUB Y N 4  
A1IC0 N1    C2     SING Y N 5  
A1IC0 C6    C5     SING Y N 6  
A1IC0 C2    N3     DOUB Y N 7  
A1IC0 C5    C4     DOUB Y N 8  
A1IC0 C5    N7     SING Y N 9  
A1IC0 N3    C4     SING Y N 10 
A1IC0 C4    N9     SING Y N 11 
A1IC0 N7    C8     DOUB Y N 12 
A1IC0 N9    C8     SING Y N 13 
A1IC0 N9    "C1'"  SING N N 14 
A1IC0 "C1'" "O4'"  SING N N 15 
A1IC0 "C1'" "C2'"  SING N N 16 
A1IC0 C08   "O2'"  SING N N 17 
A1IC0 "O2'" "C2'"  SING N N 18 
A1IC0 "O4'" "C4'"  SING N N 19 
A1IC0 "C2'" "C3'"  SING N N 20 
A1IC0 "O3'" "C3'"  SING N N 21 
A1IC0 "C4'" "C3'"  SING N N 22 
A1IC0 "C4'" "C5'"  SING N N 23 
A1IC0 "C5'" "O5'"  SING N N 24 
A1IC0 "O3'" "HO'3" SING N N 25 
A1IC0 "O5'" "H5'"  SING N N 26 
A1IC0 C9    H91    SING N N 27 
A1IC0 C9    H92    SING N N 28 
A1IC0 C9    H93    SING N N 29 
A1IC0 "C3'" "H3'"  SING N N 30 
A1IC0 "C4'" "H4'"  SING N N 31 
A1IC0 "C5'" "H5'1" SING N N 32 
A1IC0 "C5'" "H5'2" SING N N 33 
A1IC0 C10   H101   SING N N 34 
A1IC0 C10   H102   SING N N 35 
A1IC0 C10   H103   SING N N 36 
A1IC0 C2    H2     SING N N 37 
A1IC0 C8    H8     SING N N 38 
A1IC0 "C1'" "H1'"  SING N N 39 
A1IC0 "C2'" "H2'"  SING N N 40 
A1IC0 C08   H17    SING N N 41 
A1IC0 C08   H18    SING N N 42 
A1IC0 C08   H19    SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IC0 InChI            InChI                1.06  "InChI=1S/C13H19N5O4/c1-17(2)11-8-12(15-5-14-11)18(6-16-8)13-10(21-3)9(20)7(4-19)22-13/h5-7,9-10,13,19-20H,4H2,1-3H3/t7-,9-,10-,13-/m1/s1" 
A1IC0 InChIKey         InChI                1.06  IPRQAJTUSRLECG-QYVSTXNMSA-N                                                                                                                
A1IC0 SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(ncnc23)N(C)C"                                                                                   
A1IC0 SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(ncnc23)N(C)C"                                                                                         
A1IC0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)OC"                                                                               
A1IC0 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)O)OC"                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           A1IC0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-2-(hydroxymethyl)-4-methoxy-oxolan-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IC0 "Create component"      2024-06-04 PDBE 
A1IC0 "Modify parent residue" 2024-06-07 PDBE 
A1IC0 "Initial release"       2024-12-25 RCSB 
# 
