data_A1IGA
# 
_chem_comp.id                                    A1IGA 
_chem_comp.name                                  "Lansoprazole sulfide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H14 F3 N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1H-benzimidazole" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-27 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        353.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IGA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FTZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IGA C10 C1  C 0 1 Y N N N N N 212.954 213.522 231.489 -6.019 -0.565 -1.636 C10 A1IGA 1  
A1IGA C13 C2  C 0 1 Y N N N N N 218.104 207.736 237.369 3.066  2.016  -0.123 C13 A1IGA 2  
A1IGA C15 C3  C 0 1 N N N N N N 217.906 204.916 237.841 5.102  0.216  0.010  C15 A1IGA 3  
A1IGA C01 C4  C 0 1 N N N N N N 218.407 206.046 233.972 1.077  -1.187 -0.430 C01 A1IGA 4  
A1IGA C02 C5  C 0 1 Y N N N N N 218.181 207.075 235.025 1.445  0.272  -0.342 C02 A1IGA 5  
A1IGA C03 C6  C 0 1 Y N N N N N 217.818 208.415 234.662 0.469  1.244  -0.403 C03 A1IGA 6  
A1IGA C04 C7  C 0 1 N N N N N N 217.650 208.825 233.185 -0.975 0.840  -0.558 C04 A1IGA 7  
A1IGA C05 C8  C 0 1 Y N N N N N 215.584 211.060 232.139 -3.355 0.162  0.610  C05 A1IGA 8  
A1IGA C06 C9  C 0 1 Y N N N N N 213.504 211.117 231.356 -5.485 -0.435 0.721  C06 A1IGA 9  
A1IGA C07 C10 C 0 1 Y N N N N N 212.218 210.864 230.827 -6.786 -0.802 1.030  C07 A1IGA 10 
A1IGA C08 C11 C 0 1 Y N N N N N 211.343 211.915 230.644 -7.687 -1.058 0.017  C08 A1IGA 11 
A1IGA C09 C12 C 0 1 Y N N N N N 211.707 213.241 230.973 -7.305 -0.934 -1.311 C09 A1IGA 12 
A1IGA C11 C13 C 0 1 Y N N N N N 213.850 212.453 231.679 -5.091 -0.314 -0.622 C11 A1IGA 13 
A1IGA C12 C14 C 0 1 Y N N N N N 217.754 209.015 236.924 2.032  2.928  -0.196 C12 A1IGA 14 
A1IGA C14 C15 C 0 1 Y N N N N N 218.319 206.758 236.397 2.776  0.657  -0.199 C14 A1IGA 15 
A1IGA C16 C16 C 0 1 N N N N N N 218.521 203.515 238.246 6.072  -0.966 0.062  C16 A1IGA 16 
A1IGA F01 F1  F 0 1 N N N N N N 217.520 202.587 238.372 5.972  -1.704 -1.123 F01 A1IGA 17 
A1IGA F02 F2  F 0 1 N N N N N N 219.117 203.484 239.446 7.379  -0.490 0.206  F02 A1IGA 18 
A1IGA F03 F3  F 0 1 N N N N N N 219.369 202.963 237.389 5.751  -1.786 1.150  F03 A1IGA 19 
A1IGA N01 N1  N 0 1 Y N N N N N 214.607 210.261 231.652 -4.368 -0.129 1.480  N01 A1IGA 20 
A1IGA N02 N2  N 0 1 Y N N N N N 215.160 212.404 232.172 -3.783 0.053  -0.624 N02 A1IGA 21 
A1IGA N03 N3  N 0 1 Y N N N N N 217.612 209.357 235.617 0.783  2.524  -0.332 N03 A1IGA 22 
A1IGA O01 O1  O 0 1 N N N N N N 218.673 205.469 236.784 3.766  -0.270 -0.137 O01 A1IGA 23 
A1IGA S01 S1  S 0 1 N N N N N N 217.271 210.648 232.726 -1.718 0.618  1.077  S01 A1IGA 24 
A1IGA H1  H1  H 0 1 N N N N N N 213.236 214.534 231.740 -5.727 -0.475 -2.672 H1  A1IGA 25 
A1IGA H2  H2  H 0 1 N N N N N N 218.204 207.514 238.421 4.086  2.354  -0.012 H2  A1IGA 26 
A1IGA H3  H3  H 0 1 N N N N N N 217.930 205.593 238.707 5.180  0.790  0.933  H3  A1IGA 27 
A1IGA H4  H4  H 0 1 N N N N N N 216.866 204.780 237.510 5.351  0.854  -0.837 H4  A1IGA 28 
A1IGA H5  H5  H 0 1 N N N N N N 219.465 206.054 233.672 0.889  -1.575 0.571  H5  A1IGA 29 
A1IGA H6  H6  H 0 1 N N N N N N 218.145 205.053 234.367 0.179  -1.299 -1.038 H6  A1IGA 30 
A1IGA H7  H7  H 0 1 N N N N N N 217.777 206.271 233.099 1.897  -1.742 -0.887 H7  A1IGA 31 
A1IGA H8  H8  H 0 1 N N N N N N 216.826 208.219 232.780 -1.514 1.618  -1.099 H8  A1IGA 32 
A1IGA H9  H9  H 0 1 N N N N N N 218.587 208.558 232.674 -1.033 -0.096 -1.114 H9  A1IGA 33 
A1IGA H10 H10 H 0 1 N N N N N N 211.923 209.858 230.569 -7.091 -0.896 2.062  H10 A1IGA 34 
A1IGA H11 H11 H 0 1 N N N N N N 210.360 211.721 230.241 -8.700 -1.343 0.259  H11 A1IGA 35 
A1IGA H12 H12 H 0 1 N N N N N N 211.000 214.043 230.818 -8.021 -1.129 -2.095 H12 A1IGA 36 
A1IGA H13 H13 H 0 1 N N N N N N 217.586 209.780 237.667 2.248  3.984  -0.141 H13 A1IGA 37 
A1IGA H14 H14 H 0 1 N N N N N N 214.649 209.270 231.525 -4.314 -0.122 2.448  H14 A1IGA 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IGA C08 C07 DOUB Y N 1  
A1IGA C08 C09 SING Y N 2  
A1IGA C07 C06 SING Y N 3  
A1IGA C09 C10 DOUB Y N 4  
A1IGA C06 N01 SING Y N 5  
A1IGA C06 C11 DOUB Y N 6  
A1IGA C10 C11 SING Y N 7  
A1IGA N01 C05 SING Y N 8  
A1IGA C11 N02 SING Y N 9  
A1IGA C05 N02 DOUB Y N 10 
A1IGA C05 S01 SING N N 11 
A1IGA S01 C04 SING N N 12 
A1IGA C04 C03 SING N N 13 
A1IGA C01 C02 SING N N 14 
A1IGA C03 C02 DOUB Y N 15 
A1IGA C03 N03 SING Y N 16 
A1IGA C02 C14 SING Y N 17 
A1IGA N03 C12 DOUB Y N 18 
A1IGA C14 O01 SING N N 19 
A1IGA C14 C13 DOUB Y N 20 
A1IGA O01 C15 SING N N 21 
A1IGA C12 C13 SING Y N 22 
A1IGA F03 C16 SING N N 23 
A1IGA C15 C16 SING N N 24 
A1IGA C16 F01 SING N N 25 
A1IGA C16 F02 SING N N 26 
A1IGA C10 H1  SING N N 27 
A1IGA C13 H2  SING N N 28 
A1IGA C15 H3  SING N N 29 
A1IGA C15 H4  SING N N 30 
A1IGA C01 H5  SING N N 31 
A1IGA C01 H6  SING N N 32 
A1IGA C01 H7  SING N N 33 
A1IGA C04 H8  SING N N 34 
A1IGA C04 H9  SING N N 35 
A1IGA C07 H10 SING N N 36 
A1IGA C08 H11 SING N N 37 
A1IGA C09 H12 SING N N 38 
A1IGA C12 H13 SING N N 39 
A1IGA N01 H14 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IGA InChI            InChI                1.06  "InChI=1S/C16H14F3N3OS/c1-10-13(20-7-6-14(10)23-9-16(17,18)19)8-24-15-21-11-4-2-3-5-12(11)22-15/h2-7H,8-9H2,1H3,(H,21,22)" 
A1IGA InChIKey         InChI                1.06  CCHLMSUZHFPSFC-UHFFFAOYSA-N                                                                                                
A1IGA SMILES_CANONICAL CACTVS               3.385 "Cc1c(CSc2[nH]c3ccccc3n2)nccc1OCC(F)(F)F"                                                                                  
A1IGA SMILES           CACTVS               3.385 "Cc1c(CSc2[nH]c3ccccc3n2)nccc1OCC(F)(F)F"                                                                                  
A1IGA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccnc1CSc2[nH]c3ccccc3n2)OCC(F)(F)F"                                                                                  
A1IGA SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(ccnc1CSc2[nH]c3ccccc3n2)OCC(F)(F)F"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           A1IGA 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1~{H}-benzimidazole" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IGA "Create component" 2024-06-27 PDBE 
A1IGA "Initial release"  2024-11-20 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1IGA 
_pdbx_chem_comp_synonyms.name         "2-[[3-methyl-4-[2,2,2-tris(fluoranyl)ethoxy]pyridin-2-yl]methylsulfanyl]-1H-benzimidazole" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
