data_A1IHW
# 
_chem_comp.id                                    A1IHW 
_chem_comp.name                                  "4-[11-(4-cyanophenyl)-1,5-bis($l^{1}-oxidanyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{5},5$l^{5}-diruthenatricyclo[3.3.3.0^{1,5}]undecan-9-yl]benzenecarbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N4 O6 Ru2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-07-09 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.525 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IHW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FYW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IHW RU1 RU1 RU 0 0 N N N N N N -45.696 0.203  -7.442  1.273  1.538  0.298  RU1 A1IHW 1  
A1IHW RU2 RU2 RU 0 0 N N N N N N -44.960 2.287  -6.826  -0.932 1.163  -0.670 RU2 A1IHW 2  
A1IHW O6  O1  O  0 1 N N N N N N -44.290 2.513  -8.732  0.022  0.283  -1.956 O6  A1IHW 3  
A1IHW O1  O2  O  0 1 N N N N N N -46.253 -0.035 -5.496  0.627  2.025  1.937  O1  A1IHW 4  
A1IHW O2  O3  O  0 1 N N N N N N -45.712 1.988  -4.953  -1.522 2.125  0.780  O2  A1IHW 5  
A1IHW O5  O4  O  0 1 N N N N N N -45.133 0.573  -9.360  2.224  1.225  -1.220 O5  A1IHW 6  
A1IHW O3  O5  O  0 1 N N N N N N -43.787 -0.428 -7.008  1.184  3.312  -0.194 O3  A1IHW 7  
A1IHW O4  O6  O  0 1 N N N N N N -43.203 1.382  -6.281  -1.809 2.211  -1.865 O4  A1IHW 8  
A1IHW N2  N1  N  0 1 N N N N N N -46.725 2.985  -7.563  -1.384 -0.467 0.262  N2  A1IHW 9  
A1IHW N1  N2  N  0 1 N N N N N N -47.559 0.919  -7.863  1.114  -0.356 0.637  N1  A1IHW 10 
A1IHW C1  C1  C  0 1 N N N N N N -46.302 1.095  -4.707  -0.564 2.769  1.575  C1  A1IHW 11 
A1IHW C7  C2  C  0 1 N N N N N N -47.628 2.193  -8.132  -0.190 -0.816 1.032  C7  A1IHW 12 
A1IHW N3  N3  N  0 1 N N N N N N -53.234 -2.717 -8.511  6.280  -4.654 0.049  N3  A1IHW 13 
A1IHW C5  C3  C  0 1 N N N N N N -44.535 1.651  -9.647  1.390  0.456  -2.085 C5  A1IHW 14 
A1IHW C2  C4  C  0 1 N N N N N N -47.158 1.154  -3.493  -1.250 3.241  2.867  C2  A1IHW 15 
A1IHW C20 C5  C  0 1 Y N N N N N -47.793 5.044  -6.913  -2.721 -2.336 0.969  C20 A1IHW 16 
A1IHW C9  C6  C  0 1 Y N N N N N -49.793 0.292  -7.181  3.490  -0.765 0.401  C9  A1IHW 17 
A1IHW C10 C7  C  0 1 Y N N N N N -50.940 -0.442 -7.319  4.546  -1.639 0.280  C10 A1IHW 18 
A1IHW C15 C8  C  0 1 Y N N N N N -46.934 4.352  -7.764  -2.578 -1.169 0.223  C15 A1IHW 19 
A1IHW C8  C9  C  0 1 Y N N N N N -48.764 0.128  -8.031  2.191  -1.252 0.515  C8  A1IHW 20 
A1IHW C6  C10 C  0 1 N N N N N N -44.103 1.955  -11.070 2.016  -0.951 -2.186 C6  A1IHW 21 
A1IHW C13 C11 C  0 1 Y N N N N N -48.834 -0.824 -9.096  1.956  -2.624 0.508  C13 A1IHW 22 
A1IHW C16 C12 C  0 1 Y N N N N N -46.223 4.953  -8.796  -3.631 -0.707 -0.561 C16 A1IHW 23 
A1IHW C17 C13 C  0 1 Y N N N N N -46.389 6.288  -9.001  -4.818 -1.402 -0.601 C17 A1IHW 24 
A1IHW C11 C14 C  0 1 Y N N N N N -51.027 -1.367 -8.335  4.313  -3.018 0.273  C11 A1IHW 25 
A1IHW C14 C15 C  0 1 N N N N N N -52.223 -2.124 -8.457  5.410  -3.930 0.148  C14 A1IHW 26 
A1IHW N4  N4  N  0 1 N N N N N N -47.506 9.535  -8.638  -7.178 -3.875 0.076  N4  A1IHW 27 
A1IHW C12 C16 C  0 1 Y N N N N N -49.972 -1.562 -9.228  3.007  -3.503 0.389  C12 A1IHW 28 
A1IHW C18 C17 C  0 1 Y N N N N N -47.237 7.007  -8.194  -4.965 -2.574 0.147  C18 A1IHW 29 
A1IHW C19 C18 C  0 1 Y N N N N N -47.929 6.423  -7.155  -3.906 -3.036 0.933  C19 A1IHW 30 
A1IHW C21 C19 C  0 1 N N N N N N -47.413 8.415  -8.405  -6.199 -3.300 0.108  C21 A1IHW 31 
A1IHW H5  H5  H  0 1 N N N N N N -45.468 0.710  -4.102  -0.235 3.666  1.025  H5  A1IHW 32 
A1IHW H8  H8  H  0 1 N N N N N N -48.622 2.544  -7.816  -0.348 -0.456 2.061  H8  A1IHW 33 
A1IHW H9  H9  H  0 1 N N N N N N -47.528 2.307  -9.222  -0.137 -1.913 1.086  H9  A1IHW 34 
A1IHW H10 H10 H  0 1 N N N N N N -43.566 1.167  -9.454  1.525  0.916  -3.093 H10 A1IHW 35 
A1IHW H11 H11 H  0 1 N N N N N N -47.049 2.138  -3.014  -0.567 3.878  3.429  H11 A1IHW 36 
A1IHW H12 H12 H  0 1 N N N N N N -48.209 0.999  -3.778  -2.149 3.804  2.616  H12 A1IHW 37 
A1IHW H13 H13 H  0 1 N N N N N N -46.850 0.368  -2.788  -1.520 2.375  3.471  H13 A1IHW 38 
A1IHW H14 H14 H  0 1 N N N N N N -48.324 4.550  -6.113  -1.901 -2.694 1.573  H14 A1IHW 39 
A1IHW H15 H15 H  0 1 N N N N N N -49.713 1.012  -6.380  3.670  0.300  0.411  H15 A1IHW 40 
A1IHW H16 H16 H  0 1 N N N N N N -51.767 -0.297 -6.639  5.554  -1.261 0.192  H16 A1IHW 41 
A1IHW H17 H17 H  0 1 N N N N N N -44.386 1.119  -11.726 1.827  -1.363 -3.177 H17 A1IHW 42 
A1IHW H18 H18 H  0 1 N N N N N N -44.597 2.875  -11.414 3.091  -0.884 -2.019 H18 A1IHW 43 
A1IHW H19 H19 H  0 1 N N N N N N -43.012 2.091  -11.101 1.572  -1.602 -1.432 H19 A1IHW 44 
A1IHW H20 H20 H  0 1 N N N N N N -48.007 -0.955 -9.778  0.947  -2.998 0.598  H20 A1IHW 45 
A1IHW H21 H21 H  0 1 N N N N N N -45.556 4.376  -9.419  -3.516 0.199  -1.138 H21 A1IHW 46 
A1IHW H22 H22 H  0 1 N N N N N N -45.854 6.782  -9.798  -5.635 -1.043 -1.210 H22 A1IHW 47 
A1IHW H23 H23 H  0 1 N N N N N N -50.057 -2.293 -10.018 2.824  -4.568 0.384  H23 A1IHW 48 
A1IHW H24 H24 H  0 1 N N N N N N -48.573 7.022  -6.529  -4.016 -3.941 1.512  H24 A1IHW 49 
A1IHW H1  H1  H  0 1 N N N N N N -42.602 2.035  -5.943  -2.679 1.875  -2.119 H1  A1IHW 50 
A1IHW H2  H2  H  0 1 N N N N N N -43.718 -1.362 -7.168  1.965  3.827  0.051  H2  A1IHW 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IHW RU1 RU2 SING N N 1  
A1IHW RU2 O6  SING N N 2  
A1IHW RU1 O1  SING N N 3  
A1IHW RU2 O2  SING N N 4  
A1IHW RU1 O5  SING N N 5  
A1IHW RU1 O3  SING N N 6  
A1IHW RU2 O4  SING N N 7  
A1IHW RU2 N2  SING N N 8  
A1IHW RU1 N1  SING N N 9  
A1IHW N2  C7  SING N N 10 
A1IHW N1  C7  SING N N 11 
A1IHW O6  C5  SING N N 12 
A1IHW O5  C5  SING N N 13 
A1IHW C9  C10 SING Y N 14 
A1IHW N2  C15 SING N N 15 
A1IHW C1  C2  SING N N 16 
A1IHW C20 C15 SING Y N 17 
A1IHW N1  C8  SING N N 18 
A1IHW C9  C8  DOUB Y N 19 
A1IHW C5  C6  SING N N 20 
A1IHW C8  C13 SING Y N 21 
A1IHW C15 C16 DOUB Y N 22 
A1IHW C16 C17 SING Y N 23 
A1IHW C10 C11 DOUB Y N 24 
A1IHW N3  C14 TRIP N N 25 
A1IHW C11 C14 SING N N 26 
A1IHW C13 C12 DOUB Y N 27 
A1IHW C11 C12 SING Y N 28 
A1IHW C17 C18 DOUB Y N 29 
A1IHW C20 C19 DOUB Y N 30 
A1IHW C18 C19 SING Y N 31 
A1IHW N4  C21 TRIP N N 32 
A1IHW C18 C21 SING N N 33 
A1IHW C1  H5  SING N N 34 
A1IHW C7  H8  SING N N 35 
A1IHW C7  H9  SING N N 36 
A1IHW C5  H10 SING N N 37 
A1IHW C2  H11 SING N N 38 
A1IHW C2  H12 SING N N 39 
A1IHW C2  H13 SING N N 40 
A1IHW C20 H14 SING N N 41 
A1IHW C9  H15 SING N N 42 
A1IHW C10 H16 SING N N 43 
A1IHW C6  H17 SING N N 44 
A1IHW C6  H18 SING N N 45 
A1IHW C6  H19 SING N N 46 
A1IHW C13 H20 SING N N 47 
A1IHW C16 H21 SING N N 48 
A1IHW C17 H22 SING N N 49 
A1IHW C12 H23 SING N N 50 
A1IHW C19 H24 SING N N 51 
A1IHW O1  C1  SING N N 52 
A1IHW O2  C1  SING N N 53 
A1IHW O4  H1  SING N N 54 
A1IHW O3  H2  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IHW InChI            InChI                1.06  "InChI=1S/C15H10N4.2C2H4O2.2H2O.2Ru/c16-9-12-1-5-14(6-2-12)18-11-19-15-7-3-13(10-17)4-8-15;2*1-2(3)4;;;;/h1-8H,11H2;2*2H,1H3;2*1H2;;/q3*-2;;;2*+4/p-2" 
A1IHW InChIKey         InChI                1.06  RVPMMJARIZYFTQ-UHFFFAOYSA-L                                                                                                                            
A1IHW SMILES_CANONICAL CACTVS               3.385 "C[C@H]1O[Ru]2(O)O[C@@H](C)O[Ru](O)(O1)N(CN2c3ccc(cc3)C#N)c4ccc(cc4)C#N"                                                                               
A1IHW SMILES           CACTVS               3.385 "C[CH]1O[Ru]2(O)O[CH](C)O[Ru](O)(O1)N(CN2c3ccc(cc3)C#N)c4ccc(cc4)C#N"                                                                                  
A1IHW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23(N(CN([Ru]2(O1)(OC(O3)C)O)c4ccc(cc4)C#N)c5ccc(cc5)C#N)O"                                                                                    
A1IHW SMILES           "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23(N(CN([Ru]2(O1)(OC(O3)C)O)c4ccc(cc4)C#N)c5ccc(cc5)C#N)O"                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           A1IHW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[11-(4-cyanophenyl)-3,7-dimethyl-1,5-bis(oxidanyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{5},5$l^{5}-diruthenatricyclo[3.3.3.0^{1,5}]undecan-9-yl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IHW "Create component"   2024-07-09 PDBE 
A1IHW "Other modification" 2024-07-09 PDBE 
A1IHW "Initial release"    2024-11-27 RCSB 
# 
