data_A1ILX
# 
_chem_comp.id                                    A1ILX 
_chem_comp.name                                  "~{N}-[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-chloranyl-phenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 Cl2 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-20 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        582.539 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ILX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GIR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ILX C1   C1  C  0 1 N N N N N N -2.297 2.743   1.958  -7.706 -1.811 0.542  C1   A1ILX 1  
A1ILX C2   C2  C  0 1 N N S N N N -1.792 2.612   0.522  -6.510 -1.129 -0.125 C2   A1ILX 2  
A1ILX C3   C3  C  0 1 Y N N N N N -0.438 3.279   0.332  -6.489 0.330  0.251  C3   A1ILX 3  
A1ILX C7   C4  C  0 1 Y N N N N N 1.235  4.267   -1.093 -5.909 2.064  1.797  C7   A1ILX 4  
A1ILX C8   C5  C  0 1 Y N N N N N -0.008 3.682   -0.922 -5.928 0.726  1.452  C8   A1ILX 5  
A1ILX C11  C6  C  0 1 Y N N N N N -0.715 0.327   0.729  -4.039 -1.360 -0.205 C11  A1ILX 6  
A1ILX C12  C7  C  0 1 Y N N N N N -1.079 -0.525  1.761  -2.933 -1.235 0.624  C12  A1ILX 7  
A1ILX C13  C8  C  0 1 Y N N N N N -0.131 -1.325  2.370  -1.718 -0.839 0.100  C13  A1ILX 8  
A1ILX C14  C9  C  0 1 Y N N N N N 1.192  -1.280  1.944  -1.603 -0.564 -1.254 C14  A1ILX 9  
A1ILX C15  C10 C  0 1 Y N N N N N 1.553  -0.420  0.910  -2.709 -0.688 -2.085 C15  A1ILX 10 
A1ILX C16  C11 C  0 1 Y N N N N N 0.612  0.383   0.292  -3.924 -1.086 -1.562 C16  A1ILX 11 
A1ILX C19  C12 C  0 1 N N R N N N 1.902  -3.011  3.484  0.714  -0.178 -0.882 C19  A1ILX 12 
A1ILX C20  C13 C  0 1 N N N N N N 3.284  -3.401  3.983  0.792  1.157  -0.101 C20  A1ILX 13 
A1ILX C21  C14 C  0 1 N N N N N N 3.720  -4.448  2.947  2.287  1.232  0.299  C21  A1ILX 14 
A1ILX C22  C15 C  0 1 N N R N N N 2.452  -5.284  2.777  3.035  0.668  -0.926 C22  A1ILX 15 
A1ILX C30  C16 C  0 1 N N N N N N 2.669  -10.502 7.036  9.955  0.922  -0.515 C30  A1ILX 16 
A1ILX C34  C17 C  0 1 N N N N N N 4.257  -10.183 4.923  8.536  -0.430 1.403  C34  A1ILX 17 
A1ILX C35  C18 C  0 1 N N N N N N -2.526 0.691   -0.870 -5.314 -2.747 1.250  C35  A1ILX 18 
A1ILX C4   C19 C  0 1 Y N N N N N 0.416  3.476   1.412  -7.025 1.273  -0.606 C4   A1ILX 19 
A1ILX C5   C20 C  0 1 Y N N N N N 1.659  4.057   1.250  -7.005 2.611  -0.262 C5   A1ILX 20 
A1ILX C6   C21 C  0 1 Y N N N N N 2.053  4.441   0.003  -6.449 3.007  0.942  C6   A1ILX 21 
A1ILX CL9  CL1 CL 0 0 N N N N N N 3.614  5.179   -0.196 -6.424 4.688  1.375  CL9  A1ILX 22 
A1ILX N10  N1  N  0 1 N N N N N N -1.701 1.160   0.113  -5.270 -1.768 0.325  N10  A1ILX 23 
A1ILX CL17 CL2 CL 0 0 N N N N N N 3.216  -0.360  0.380  -2.564 -0.343 -3.780 CL17 A1ILX 24 
A1ILX O18  O1  O  0 1 N N N N N N 2.207  -2.023  2.482  -0.406 -0.174 -1.769 O18  A1ILX 25 
A1ILX C23  C22 C  0 1 N N N N N N 1.304  -4.274  2.851  2.035  -0.228 -1.678 C23  A1ILX 26 
A1ILX N24  N2  N  0 1 N N N N N N 2.323  -6.280  3.842  4.188  -0.123 -0.489 N24  A1ILX 27 
A1ILX C25  C23 C  0 1 N N N N N N 2.785  -7.538  3.719  5.369  0.482  -0.252 C25  A1ILX 28 
A1ILX O26  O2  O  0 1 N N N N N N 3.301  -7.939  2.679  5.477  1.684  -0.400 O26  A1ILX 29 
A1ILX N27  N3  N  0 1 N N N N N N 2.622  -8.337  4.791  6.430  -0.246 0.150  N27  A1ILX 30 
A1ILX C28  C24 C  0 1 N N R N N N 2.807  -9.784  4.669  7.714  0.412  0.408  C28  A1ILX 31 
A1ILX C29  C25 C  0 1 N N N N N N 1.951  -10.546 5.696  8.505  0.535  -0.906 C29  A1ILX 32 
A1ILX S31  S1  S  0 1 N N N N N N 4.363  -10.800 6.580  10.282 -0.159 0.928  S31  A1ILX 33 
A1ILX O32  O3  O  0 1 N N N N N N 5.257  -10.014 7.377  10.844 -1.385 0.480  O32  A1ILX 34 
A1ILX O33  O4  O  0 1 N N N N N N 4.574  -12.224 6.553  10.937 0.592  1.941  O33  A1ILX 35 
A1ILX O36  O5  O  0 1 N N N N N N -3.308 1.429   -1.453 -6.384 -3.160 1.645  O36  A1ILX 36 
A1ILX C37  C26 C  0 1 N N N N N N -2.404 -0.761  -1.276 -4.035 -3.329 1.793  C37  A1ILX 37 
A1ILX C38  C27 C  0 1 N N N N N N -2.784 -1.060  -2.728 -4.166 -4.851 1.887  C38  A1ILX 38 
A1ILX H1C  H1  H  0 1 N N N N N N -3.275 2.248   2.050  -7.724 -2.865 0.266  H1C  A1ILX 39 
A1ILX H1A  H2  H  0 1 N N N N N N -1.580 2.267   2.643  -7.619 -1.720 1.624  H1A  A1ILX 40 
A1ILX H1B  H3  H  0 1 N N N N N N -2.399 3.808   2.215  -8.628 -1.333 0.210  H1B  A1ILX 41 
A1ILX H2   H4  H  0 1 N N N N N N -2.515 3.111   -0.140 -6.594 -1.224 -1.208 H2   A1ILX 42 
A1ILX H7   H5  H  0 1 N N N N N N 1.560  4.583   -2.073 -5.472 2.373  2.735  H7   A1ILX 43 
A1ILX H8   H6  H  0 1 N N N N N N -0.651 3.538   -1.778 -5.506 -0.011 2.119  H8   A1ILX 44 
A1ILX H12  H7  H  0 1 N N N N N N -2.107 -0.563  2.090  -3.022 -1.448 1.679  H12  A1ILX 45 
A1ILX H13  H8  H  0 1 N N N N N N -0.417 -1.984  3.176  -0.858 -0.742 0.746  H13  A1ILX 46 
A1ILX H16  H9  H  0 1 N N N N N N 0.897  1.042   -0.515 -4.785 -1.182 -2.207 H16  A1ILX 47 
A1ILX H19  H10 H  0 1 N N N N N N 1.268  -2.624  4.295  0.651  -1.020 -0.194 H19  A1ILX 48 
A1ILX H20B H11 H  0 0 N N N N N N 3.965  -2.537  3.988  0.521  1.996  -0.741 H20B A1ILX 49 
A1ILX H20A H12 H  0 0 N N N N N N 3.236  -3.835  4.993  0.157  1.124  0.784  H20A A1ILX 50 
A1ILX H21B H13 H  0 0 N N N N N N 4.014  -3.973  2.000  2.581  2.265  0.484  H21B A1ILX 51 
A1ILX H21A H14 H  0 0 N N N N N N 4.553  -5.059  3.324  2.477  0.617  1.179  H21A A1ILX 52 
A1ILX H22  H15 H  0 1 N N N N N N 2.456  -5.769  1.790  3.363  1.483  -1.571 H22  A1ILX 53 
A1ILX H30B H16 H  0 0 N N N N N N 2.554  -9.519  7.516  10.647 0.702  -1.328 H30B A1ILX 54 
A1ILX H30A H17 H  0 0 N N N N N N 2.296  -11.286 7.712  10.015 1.973  -0.233 H30A A1ILX 55 
A1ILX H34B H18 H  0 0 N N N N N N 4.912  -9.307  4.807  8.364  -0.086 2.423  H34B A1ILX 56 
A1ILX H34A H19 H  0 0 N N N N N N 4.560  -10.965 4.212  8.277  -1.485 1.312  H34A A1ILX 57 
A1ILX H4   H20 H  0 1 N N N N N N 0.101  3.168   2.398  -7.458 0.963  -1.546 H4   A1ILX 58 
A1ILX H5   H21 H  0 1 N N N N N N 2.309  4.205   2.100  -7.423 3.347  -0.932 H5   A1ILX 59 
A1ILX H23B H22 H  0 0 N N N N N N 0.921  -4.054  1.843  2.408  -1.252 -1.717 H23B A1ILX 60 
A1ILX H23A H23 H  0 0 N N N N N N 0.488  -4.666  3.475  1.878  0.152  -2.687 H23A A1ILX 61 
A1ILX H24  H24 H  0 1 N N N N N N 1.874  -6.015  4.695  4.102  -1.082 -0.371 H24  A1ILX 62 
A1ILX H27  H25 H  0 1 N N N N N N 2.373  -7.940  5.674  6.344  -1.205 0.268  H27  A1ILX 63 
A1ILX H28  H26 H  0 1 N N N N N N 2.520  -10.111 3.659  7.540  1.404  0.823  H28  A1ILX 64 
A1ILX H29B H27 H  0 0 N N N N N N 0.964  -10.069 5.786  8.068  1.311  -1.534 H29B A1ILX 65 
A1ILX H29A H28 H  0 0 N N N N N N 1.825  -11.590 5.375  8.503  -0.418 -1.434 H29A A1ILX 66 
A1ILX H37B H29 H  0 0 N N N N N N -1.359 -1.071  -1.126 -3.210 -3.076 1.127  H37B A1ILX 67 
A1ILX H37A H30 H  0 0 N N N N N N -3.060 -1.355  -0.622 -3.841 -2.919 2.784  H37A A1ILX 68 
A1ILX H38C H31 H  0 0 N N N N N N -2.663 -2.135  -2.925 -4.991 -5.103 2.553  H38C A1ILX 69 
A1ILX H38B H32 H  0 0 N N N N N N -3.832 -0.771  -2.900 -4.360 -5.261 0.896  H38B A1ILX 70 
A1ILX H38A H33 H  0 0 N N N N N N -2.131 -0.488  -3.403 -3.240 -5.272 2.280  H38A A1ILX 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ILX C1  C2   SING N N 1  
A1ILX C2  C3   SING N N 2  
A1ILX C3  C4   DOUB Y N 3  
A1ILX C4  C5   SING Y N 4  
A1ILX C5  C6   DOUB Y N 5  
A1ILX C6  C7   SING Y N 6  
A1ILX C7  C8   DOUB Y N 7  
A1ILX C6  CL9  SING N N 8  
A1ILX C2  N10  SING N N 9  
A1ILX N10 C11  SING N N 10 
A1ILX C11 C12  DOUB Y N 11 
A1ILX C12 C13  SING Y N 12 
A1ILX C13 C14  DOUB Y N 13 
A1ILX C14 C15  SING Y N 14 
A1ILX C15 C16  DOUB Y N 15 
A1ILX C15 CL17 SING N N 16 
A1ILX C14 O18  SING N N 17 
A1ILX O18 C19  SING N N 18 
A1ILX C19 C20  SING N N 19 
A1ILX C20 C21  SING N N 20 
A1ILX C21 C22  SING N N 21 
A1ILX C22 C23  SING N N 22 
A1ILX C22 N24  SING N N 23 
A1ILX N24 C25  SING N N 24 
A1ILX C25 O26  DOUB N N 25 
A1ILX C25 N27  SING N N 26 
A1ILX N27 C28  SING N N 27 
A1ILX C28 C29  SING N N 28 
A1ILX C29 C30  SING N N 29 
A1ILX C30 S31  SING N N 30 
A1ILX S31 O32  DOUB N N 31 
A1ILX S31 O33  DOUB N N 32 
A1ILX S31 C34  SING N N 33 
A1ILX N10 C35  SING N N 34 
A1ILX C35 O36  DOUB N N 35 
A1ILX C35 C37  SING N N 36 
A1ILX C37 C38  SING N N 37 
A1ILX C8  C3   SING Y N 38 
A1ILX C16 C11  SING Y N 39 
A1ILX C23 C19  SING N N 40 
A1ILX C34 C28  SING N N 41 
A1ILX C1  H1C  SING N N 42 
A1ILX C1  H1A  SING N N 43 
A1ILX C1  H1B  SING N N 44 
A1ILX C2  H2   SING N N 45 
A1ILX C7  H7   SING N N 46 
A1ILX C8  H8   SING N N 47 
A1ILX C12 H12  SING N N 48 
A1ILX C13 H13  SING N N 49 
A1ILX C16 H16  SING N N 50 
A1ILX C19 H19  SING N N 51 
A1ILX C20 H20B SING N N 52 
A1ILX C20 H20A SING N N 53 
A1ILX C21 H21B SING N N 54 
A1ILX C21 H21A SING N N 55 
A1ILX C22 H22  SING N N 56 
A1ILX C30 H30B SING N N 57 
A1ILX C30 H30A SING N N 58 
A1ILX C34 H34B SING N N 59 
A1ILX C34 H34A SING N N 60 
A1ILX C4  H4   SING N N 61 
A1ILX C5  H5   SING N N 62 
A1ILX C23 H23B SING N N 63 
A1ILX C23 H23A SING N N 64 
A1ILX N24 H24  SING N N 65 
A1ILX N27 H27  SING N N 66 
A1ILX C28 H28  SING N N 67 
A1ILX C29 H29B SING N N 68 
A1ILX C29 H29A SING N N 69 
A1ILX C37 H37B SING N N 70 
A1ILX C37 H37A SING N N 71 
A1ILX C38 H38C SING N N 72 
A1ILX C38 H38B SING N N 73 
A1ILX C38 H38A SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ILX InChI            InChI                1.06  "InChI=1S/C27H33Cl2N3O5S/c1-3-26(33)32(17(2)18-4-6-19(28)7-5-18)22-9-11-25(24(29)15-22)37-23-10-8-20(14-23)30-27(34)31-21-12-13-38(35,36)16-21/h4-7,9,11,15,17,20-21,23H,3,8,10,12-14,16H2,1-2H3,(H2,30,31,34)/t17-,20-,21-,23-/m1/s1" 
A1ILX InChIKey         InChI                1.06  PNLMIXVXXGBETG-XMXZMMKCSA-N                                                                                                                                                                                                            
A1ILX SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](C)c1ccc(Cl)cc1)c2ccc(O[C@@H]3CC[C@H](C3)NC(=O)N[C@@H]4CC[S](=O)(=O)C4)c(Cl)c2"                                                                                                                                        
A1ILX SMILES           CACTVS               3.385 "CCC(=O)N([CH](C)c1ccc(Cl)cc1)c2ccc(O[CH]3CC[CH](C3)NC(=O)N[CH]4CC[S](=O)(=O)C4)c(Cl)c2"                                                                                                                                               
A1ILX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(c(c1)Cl)O[C@@H]2CC[C@H](C2)NC(=O)N[C@@H]3CCS(=O)(=O)C3)[C@@H](C)c4ccc(cc4)Cl"                                                                                                                                          
A1ILX SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(c(c1)Cl)OC2CCC(C2)NC(=O)NC3CCS(=O)(=O)C3)C(C)c4ccc(cc4)Cl"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           A1ILX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-chloranyl-phenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ILX "Create component" 2024-08-20 PDBE 
A1ILX "Modify PCM"       2024-09-27 PDBE 
A1ILX "Initial release"  2024-12-18 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ILX 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C38 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
