data_A1ILY
# 
_chem_comp.id                                    A1ILY 
_chem_comp.name                                  "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H27 Cl N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-20 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.915 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ILY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GIP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ILY C1  C1  C  0 1 N N S N N N -1.396 3.662  3.773  -2.187 0.969  1.537  C1  A1ILY 1  
A1ILY C2  C2  C  0 1 N N N N N N -2.828 3.164  1.856  -2.088 2.549  -0.315 C2  A1ILY 2  
A1ILY C3  C3  C  0 1 N N N N N N -3.555 2.189  0.978  -1.314 3.350  -1.331 C3  A1ILY 3  
A1ILY C7  C4  C  0 1 Y N N N N N -2.607 -0.740 4.279  1.839  0.079  0.156  C7  A1ILY 4  
A1ILY C8  C5  C  0 1 Y N N N N N -1.480 -1.388 3.797  2.680  1.182  0.152  C8  A1ILY 5  
A1ILY C9  C6  C  0 1 N N R N N N -0.203 -3.468 3.915  4.491  -0.319 -0.193 C9  A1ILY 6  
A1ILY C10 C7  C  0 1 N N N N N N -0.879 -4.646 3.273  4.663  -1.072 1.150  C10 A1ILY 7  
A1ILY C11 C8  C  0 1 N N N N N N -1.500 -5.359 4.486  5.692  -2.174 0.795  C11 A1ILY 8  
A1ILY C12 C9  C  0 1 N N R N N N -0.436 -5.253 5.565  6.673  -1.478 -0.170 C12 A1ILY 9  
A1ILY C13 C10 C  0 1 N N N N N N 0.453  -4.053 5.160  5.910  -0.299 -0.799 C13 A1ILY 10 
A1ILY C14 C11 C  0 1 Y N N N N N -0.587 -0.717 2.978  2.150  2.459  0.268  C14 A1ILY 11 
A1ILY C15 C12 C  0 1 Y N N N N N -0.817 0.608  2.652  0.786  2.633  0.387  C15 A1ILY 12 
A1ILY C16 C13 C  0 1 Y N N N N N 0.088  3.672  3.445  -2.825 -0.248 0.918  C16 A1ILY 13 
A1ILY C19 C14 C  0 1 Y N N N N N 2.758  3.486  2.738  -3.996 -2.480 -0.217 C19 A1ILY 14 
A1ILY C20 C15 C  0 1 Y N N N N N 1.825  3.786  1.776  -4.044 -1.264 -0.874 C20 A1ILY 15 
A1ILY C21 C16 C  0 1 Y N N N N N 0.494  3.879  2.135  -3.459 -0.148 -0.306 C21 A1ILY 16 
A1ILY CL  CL1 CL 0 0 N N N N N N 4.404  3.198  2.259  -4.731 -3.882 -0.930 CL  A1ILY 17 
A1ILY C18 C17 C  0 1 Y N N N N N 2.392  3.284  4.049  -3.356 -2.580 1.005  C18 A1ILY 18 
A1ILY C17 C18 C  0 1 Y N N N N N 1.056  3.380  4.395  -2.772 -1.464 1.573  C17 A1ILY 19 
A1ILY C   C19 C  0 1 N N N N N N -1.796 3.532  5.239  -3.273 1.873  2.124  C   A1ILY 20 
A1ILY N   N1  N  0 1 N N N N N N -2.107 2.676  2.909  -1.441 1.704  0.512  N   A1ILY 21 
A1ILY C4  C20 C  0 1 N N N N N N -3.206 2.409  -0.439 -2.033 3.295  -2.680 C4  A1ILY 22 
A1ILY O   O1  O  0 1 N N N N N N -2.839 4.360  1.585  -3.293 2.665  -0.243 O   A1ILY 23 
A1ILY C5  C21 C  0 1 Y N N N N N -1.941 1.272  3.140  -0.057 1.529  0.391  C5  A1ILY 24 
A1ILY C6  C22 C  0 1 Y N N N N N -2.835 0.584  3.951  0.474  0.251  0.270  C6  A1ILY 25 
A1ILY O1  O2  O  0 1 N N N N N N -1.340 -2.656 4.316  4.024  1.012  0.035  O1  A1ILY 26 
A1ILY N1  N2  N  0 1 N N N N N N 0.361  -6.513 5.663  7.099  -2.417 -1.217 N1  A1ILY 27 
A1ILY H   H1  H  0 1 N N N N N N -1.767 4.649  3.460  -1.505 0.659  2.329  H   A1ILY 28 
A1ILY H7  H2  H  0 1 N N N N N N -3.275 1.165  1.265  -1.243 4.386  -0.999 H7  A1ILY 29 
A1ILY H6  H3  H  0 1 N N N N N N -4.639 2.323  1.109  -0.312 2.933  -1.435 H6  A1ILY 30 
A1ILY H12 H4  H  0 1 N N N N N N -3.306 -1.269 4.910  2.252  -0.915 0.066  H12 A1ILY 31 
A1ILY H1  H5  H  0 1 N N N N N N 0.509  -2.955 3.251  3.805  -0.857 -0.847 H1  A1ILY 32 
A1ILY H14 H6  H  0 1 N N N N N N -1.652 -4.323 2.560  5.058  -0.407 1.918  H14 A1ILY 33 
A1ILY H13 H7  H  0 1 N N N N N N -0.152 -5.292 2.758  3.718  -1.513 1.469  H13 A1ILY 34 
A1ILY H16 H8  H  0 1 N N N N N N -2.427 -4.857 4.801  6.213  -2.511 1.691  H16 A1ILY 35 
A1ILY H15 H9  H  0 1 N N N N N N -1.715 -6.412 4.252  5.199  -3.011 0.301  H15 A1ILY 36 
A1ILY H2  H10 H  0 1 N N N N N N -0.914 -5.037 6.532  7.541  -1.112 0.379  H2  A1ILY 37 
A1ILY H19 H11 H  0 1 N N N N N N 0.483  -3.306 5.967  5.856  -0.423 -1.880 H19 A1ILY 38 
A1ILY H20 H12 H  0 1 N N N N N N 1.476  -4.390 4.934  6.407  0.640  -0.555 H20 A1ILY 39 
A1ILY H21 H13 H  0 1 N N N N N N 0.285  -1.226 2.595  2.806  3.318  0.265  H21 A1ILY 40 
A1ILY H22 H14 H  0 1 N N N N N N -0.120 1.132  2.014  0.373  3.627  0.478  H22 A1ILY 41 
A1ILY H25 H15 H  0 1 N N N N N N 2.128  3.947  0.752  -4.543 -1.185 -1.829 H25 A1ILY 42 
A1ILY H26 H16 H  0 1 N N N N N N -0.243 4.117  1.382  -3.496 0.802  -0.820 H26 A1ILY 43 
A1ILY H24 H17 H  0 1 N N N N N N 3.137  3.054  4.797  -3.318 -3.530 1.519  H24 A1ILY 44 
A1ILY H23 H18 H  0 1 N N N N N N 0.761  3.225  5.422  -2.273 -1.542 2.528  H23 A1ILY 45 
A1ILY H3  H19 H  0 1 N N N N N N -2.893 3.539  5.322  -4.167 1.817  1.502  H3  A1ILY 46 
A1ILY H4  H20 H  0 1 N N N N N N -1.404 2.587  5.644  -3.513 1.543  3.135  H4  A1ILY 47 
A1ILY H5  H21 H  0 1 N N N N N N -1.379 4.376  5.809  -2.914 2.901  2.152  H5  A1ILY 48 
A1ILY H10 H22 H  0 1 N N N N N N -3.748 1.686  -1.067 -1.473 3.874  -3.414 H10 A1ILY 49 
A1ILY H9  H23 H  0 1 N N N N N N -3.487 3.432  -0.731 -2.104 2.259  -3.012 H9  A1ILY 50 
A1ILY H8  H24 H  0 1 N N N N N N -2.123 2.274  -0.575 -3.034 3.712  -2.575 H8  A1ILY 51 
A1ILY H11 H25 H  0 1 N N N N N N -3.714 1.086  4.328  -0.181 -0.608 0.273  H11 A1ILY 52 
A1ILY H17 H26 H  0 1 N N N N N N 1.052  -6.416 6.379  7.582  -3.208 -0.818 H17 A1ILY 53 
A1ILY HX1 H27 H  0 1 N N N N N N -0.246 -7.275 5.887  6.314  -2.717 -1.776 HX1 A1ILY 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ILY C   C1  SING N N 1  
A1ILY C1  C16 SING N N 2  
A1ILY C16 C17 DOUB Y N 3  
A1ILY C17 C18 SING Y N 4  
A1ILY C18 C19 DOUB Y N 5  
A1ILY C19 C20 SING Y N 6  
A1ILY C20 C21 DOUB Y N 7  
A1ILY C19 CL  SING N N 8  
A1ILY C1  N   SING N N 9  
A1ILY N   C5  SING N N 10 
A1ILY C5  C6  DOUB Y N 11 
A1ILY C6  C7  SING Y N 12 
A1ILY C7  C8  DOUB Y N 13 
A1ILY C8  C14 SING Y N 14 
A1ILY C14 C15 DOUB Y N 15 
A1ILY C8  O1  SING N N 16 
A1ILY O1  C9  SING N N 17 
A1ILY C9  C10 SING N N 18 
A1ILY C10 C11 SING N N 19 
A1ILY C11 C12 SING N N 20 
A1ILY C12 C13 SING N N 21 
A1ILY C12 N1  SING N N 22 
A1ILY N   C2  SING N N 23 
A1ILY C2  O   DOUB N N 24 
A1ILY C2  C3  SING N N 25 
A1ILY C3  C4  SING N N 26 
A1ILY C21 C16 SING Y N 27 
A1ILY C15 C5  SING Y N 28 
A1ILY C13 C9  SING N N 29 
A1ILY C1  H   SING N N 30 
A1ILY C3  H7  SING N N 31 
A1ILY C3  H6  SING N N 32 
A1ILY C7  H12 SING N N 33 
A1ILY C9  H1  SING N N 34 
A1ILY C10 H14 SING N N 35 
A1ILY C10 H13 SING N N 36 
A1ILY C11 H16 SING N N 37 
A1ILY C11 H15 SING N N 38 
A1ILY C12 H2  SING N N 39 
A1ILY C13 H19 SING N N 40 
A1ILY C13 H20 SING N N 41 
A1ILY C14 H21 SING N N 42 
A1ILY C15 H22 SING N N 43 
A1ILY C20 H25 SING N N 44 
A1ILY C21 H26 SING N N 45 
A1ILY C18 H24 SING N N 46 
A1ILY C17 H23 SING N N 47 
A1ILY C   H3  SING N N 48 
A1ILY C   H4  SING N N 49 
A1ILY C   H5  SING N N 50 
A1ILY C4  H10 SING N N 51 
A1ILY C4  H9  SING N N 52 
A1ILY C4  H8  SING N N 53 
A1ILY C6  H11 SING N N 54 
A1ILY N1  H17 SING N N 55 
A1ILY N1  HX1 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ILY InChI            InChI                1.06  "InChI=1S/C22H27ClN2O2/c1-3-22(26)25(15(2)16-4-6-17(23)7-5-16)19-9-12-20(13-10-19)27-21-11-8-18(24)14-21/h4-7,9-10,12-13,15,18,21H,3,8,11,14,24H2,1-2H3/t15?,18-,21+/m0/s1" 
A1ILY InChIKey         InChI                1.06  PQLXGIZCLMGGSB-RJJXBHFZSA-N                                                                                                                                                 
A1ILY SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](C)c1ccc(Cl)cc1)c2ccc(O[C@@H]3CC[C@@H](N)C3)cc2"                                                                                                            
A1ILY SMILES           CACTVS               3.385 "CCC(=O)N([CH](C)c1ccc(Cl)cc1)c2ccc(O[CH]3CC[CH](N)C3)cc2"                                                                                                                  
A1ILY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)O[C@@H]2CC[C@H](C2)N)[C@@H](C)c3ccc(cc3)Cl"                                                                                                             
A1ILY SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC2CCC(C2)N)C(C)c3ccc(cc3)Cl"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           A1ILY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ILY "Create component" 2024-08-20 PDBE 
A1ILY "Modify PCM"       2024-09-27 PDBE 
A1ILY "Initial release"  2024-12-18 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ILY 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
