data_A1IMY
# 
_chem_comp.id                                    A1IMY 
_chem_comp.name                                  "(1S,3S,4S)-N-[(2S)-1-azanylidene-3-[(3S)-5,5-dimethyl-2-oxidanylidene-pyrrolidin-3-yl]propan-2-yl]-2-[(2R)-3-cyclobutyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]propanoyl]-5,5-bis(fluoranyl)-2-azabicyclo[2.2.2]octane-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H36 F5 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-28 
_chem_comp.pdbx_modified_date                    2024-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        577.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IMY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GLV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IMY C2  C1  C 0 1 N N N N N N 18.101 9.439  20.232 -2.520 3.952  -0.344 C2  A1IMY 1  
A1IMY C5  C2  C 0 1 N N N N N N 19.398 8.748  19.914 -2.542 2.485  -0.001 C5  A1IMY 2  
A1IMY C8  C3  C 0 1 N N R N N N 20.546 6.629  19.499 -2.850 0.148  -0.619 C8  A1IMY 3  
A1IMY C11 C4  C 0 1 N N N N N N 20.239 6.987  16.990 -5.287 0.238  -0.077 C11 A1IMY 4  
A1IMY C12 C5  C 0 1 N N N N N N 20.082 6.320  15.606 -6.431 -0.125 0.885  C12 A1IMY 5  
A1IMY C15 C6  C 0 1 N N N N N N 20.724 5.552  20.542 -1.493 -0.270 -0.114 C15 A1IMY 6  
A1IMY C18 C7  C 0 1 N N S N N N 22.047 3.848  21.746 0.184  -2.030 0.327  C18 A1IMY 7  
A1IMY C23 C8  C 0 1 N N N N N N 24.196 5.551  20.958 -1.548 -3.463 -1.563 C23 A1IMY 8  
A1IMY C24 C9  C 0 1 N N S N N N 23.136 5.163  19.923 -2.131 -2.639 -0.405 C24 A1IMY 9  
A1IMY C27 C10 C 0 1 N N N N N N 23.534 2.693  20.132 -0.896 -4.100 1.211  C27 A1IMY 10 
A1IMY C30 C11 C 0 1 N N N N N N 21.710 4.380  23.122 1.213  -1.476 -0.626 C30 A1IMY 11 
A1IMY C33 C12 C 0 1 N N S N N N 20.621 4.029  25.269 3.501  -0.827 -1.155 C33 A1IMY 12 
A1IMY C35 C13 C 0 1 N N N N N N 20.782 2.943  26.283 3.890  -1.785 -2.252 C35 A1IMY 13 
A1IMY C37 C14 C 0 1 N N N N N N 19.168 4.393  24.951 4.741  -0.452 -0.341 C37 A1IMY 14 
A1IMY C38 C15 C 0 1 N N S N N N 18.382 5.057  26.091 4.364  0.593  0.711  C38 A1IMY 15 
A1IMY C39 C16 C 0 1 N N N N N N 18.864 6.477  26.432 5.560  0.872  1.650  C39 A1IMY 16 
A1IMY C40 C17 C 0 1 N N N N N N 17.832 7.419  25.771 6.216  2.094  0.970  C40 A1IMY 17 
A1IMY F1  F1  F 0 1 N N N N N N 18.362 10.739 20.630 -2.200 4.693  0.798  F1  A1IMY 18 
A1IMY F3  F2  F 0 1 N N N N N N 17.278 9.433  19.111 -1.561 4.185  -1.336 F3  A1IMY 19 
A1IMY F4  F3  F 0 1 N N N N N N 17.374 8.788  21.194 -3.780 4.340  -0.813 F4  A1IMY 20 
A1IMY O6  O1  O 0 1 N N N N N N 20.405 9.387  19.692 -2.300 2.123  1.131  O6  A1IMY 21 
A1IMY N7  N1  N 0 1 N N N N N N 19.379 7.418  19.847 -2.829 1.574  -0.953 N7  A1IMY 22 
A1IMY C10 C18 C 0 1 N N N N N N 20.260 5.968  18.148 -3.899 -0.107 0.465  C10 A1IMY 23 
A1IMY C13 C19 C 0 1 N N N N N N 18.877 7.183  15.291 -7.094 1.200  0.471  C13 A1IMY 24 
A1IMY C14 C20 C 0 1 N N N N N N 18.921 7.738  16.732 -5.681 1.710  0.131  C14 A1IMY 25 
A1IMY O16 O2  O 0 1 N N N N N N 19.775 5.242  21.236 -0.697 0.570  0.250  O16 A1IMY 26 
A1IMY N17 N2  N 0 1 N N N N N N 21.900 4.921  20.723 -1.164 -1.576 -0.067 N17 A1IMY 27 
A1IMY C20 C21 C 0 1 N N S N N N 23.437 3.224  21.563 0.174  -3.564 0.255  C20 A1IMY 28 
A1IMY C22 C22 C 0 1 N N N N N N 24.511 4.294  21.803 -0.168 -3.994 -1.173 C22 A1IMY 29 
A1IMY C26 C23 C 0 1 N N N N N N 23.497 3.870  19.154 -2.271 -3.554 0.817  C26 A1IMY 30 
A1IMY F28 F4  F 0 1 N N N N N N 22.470 1.841  19.867 -0.594 -3.699 2.517  F28 A1IMY 31 
A1IMY F29 F5  F 0 1 N N N N N N 24.681 1.918  19.980 -0.914 -5.498 1.150  F29 A1IMY 32 
A1IMY O31 O3  O 0 1 N N N N N N 21.867 5.543  23.391 0.869  -1.042 -1.705 O31 A1IMY 33 
A1IMY N32 N3  N 0 1 N N N N N N 21.108 3.562  23.980 2.515  -1.464 -0.278 N32 A1IMY 34 
A1IMY N36 N4  N 0 1 N N N N N N 21.246 3.386  27.380 3.366  -2.951 -2.299 N36 A1IMY 35 
A1IMY C41 C24 C 0 1 N N N N N N 17.456 8.624  26.643 6.782  3.046  2.025  C41 A1IMY 36 
A1IMY C42 C25 C 0 1 N N N N N N 18.419 7.902  24.424 7.324  1.640  0.019  C42 A1IMY 37 
A1IMY N43 N5  N 0 1 N N N N N N 16.643 6.551  25.555 5.138  2.750  0.221  N43 A1IMY 38 
A1IMY C44 C26 C 0 1 N N N N N N 16.938 5.241  25.701 4.087  1.928  0.056  C44 A1IMY 39 
A1IMY O45 O4  O 0 1 N N N N N N 16.170 4.311  25.520 3.067  2.214  -0.534 O45 A1IMY 40 
A1IMY H1  H1  H 0 1 N N N N N N 21.448 7.255  19.433 -3.100 -0.430 -1.509 H1  A1IMY 41 
A1IMY H2  H2  H 0 1 N N N N N N 21.103 7.667  17.024 -5.444 -0.116 -1.095 H2  A1IMY 42 
A1IMY H3  H3  H 0 1 N N N N N N 19.858 5.244  15.654 -6.994 -1.008 0.581  H3  A1IMY 43 
A1IMY H4  H4  H 0 1 N N N N N N 20.936 6.487  14.933 -6.129 -0.155 1.931  H4  A1IMY 44 
A1IMY H5  H5  H 0 1 N N N N N N 21.311 3.065  21.511 0.405  -1.705 1.343  H5  A1IMY 45 
A1IMY H6  H6  H 0 1 N N N N N N 25.107 5.898  20.449 -2.210 -4.301 -1.782 H6  A1IMY 46 
A1IMY H7  H7  H 0 1 N N N N N N 23.811 6.352  21.607 -1.458 -2.831 -2.446 H7  A1IMY 47 
A1IMY H8  H8  H 0 1 N N N N N N 22.982 5.989  19.213 -3.092 -2.208 -0.684 H8  A1IMY 48 
A1IMY H9  H9  H 0 1 N N N N N N 21.166 4.929  25.588 3.069  0.072  -1.594 H9  A1IMY 49 
A1IMY H10 H10 H 0 1 N N N N N N 20.534 1.907  26.105 4.612  -1.486 -2.998 H10 A1IMY 50 
A1IMY H12 H12 H 0 1 N N N N N N 19.173 5.085  24.096 5.133  -1.341 0.154  H12 A1IMY 51 
A1IMY H13 H13 H 0 1 N N N N N N 18.642 3.468  24.672 5.501  -0.041 -1.005 H13 A1IMY 52 
A1IMY H14 H14 H 0 1 N N N N N N 18.445 4.427  26.990 3.498  0.261  1.284  H14 A1IMY 53 
A1IMY H15 H15 H 0 1 N N N N N N 19.868 6.654  26.020 5.218  1.121  2.654  H15 A1IMY 54 
A1IMY H16 H16 H 0 1 N N N N N N 18.883 6.628  27.521 6.245  0.023  1.672  H16 A1IMY 55 
A1IMY H17 H17 H 0 1 N N N N N N 18.522 6.942  20.045 -3.022 1.864  -1.858 H17 A1IMY 56 
A1IMY H18 H18 H 0 1 N N N N N N 19.281 5.470  18.198 -3.873 -1.157 0.756  H18 A1IMY 57 
A1IMY H19 H19 H 0 1 N N N N N N 21.042 5.221  17.947 -3.682 0.516  1.333  H19 A1IMY 58 
A1IMY H20 H20 H 0 1 N N N N N N 19.054 7.938  14.511 -7.745 1.110  -0.398 H20 A1IMY 59 
A1IMY H21 H21 H 0 1 N N N N N N 17.965 6.616  15.053 -7.563 1.731  1.299  H21 A1IMY 60 
A1IMY H22 H22 H 0 1 N N N N N N 19.011 8.833  16.788 -5.174 2.183  0.972  H22 A1IMY 61 
A1IMY H23 H23 H 0 1 N N N N N N 18.085 7.406  17.365 -5.640 2.307  -0.780 H23 A1IMY 62 
A1IMY H24 H24 H 0 1 N N N N N N 23.570 2.398  22.277 1.151  -3.952 0.543  H24 A1IMY 63 
A1IMY H25 H25 H 0 1 N N N N N N 25.494 3.896  21.513 -0.169 -5.082 -1.232 H25 A1IMY 64 
A1IMY H26 H26 H 0 1 N N N N N N 24.525 4.565  22.869 0.579  -3.596 -1.860 H26 A1IMY 65 
A1IMY H27 H27 H 0 1 N N N N N N 22.740 3.680  18.379 -2.687 -2.987 1.650  H27 A1IMY 66 
A1IMY H28 H28 H 0 1 N N N N N N 24.484 3.987  18.682 -2.936 -4.384 0.576  H28 A1IMY 67 
A1IMY H29 H29 H 0 1 N N N N N N 20.987 2.601  23.733 2.799  -1.876 0.552  H29 A1IMY 68 
A1IMY H30 H30 H 0 1 N N N N N N 21.355 2.661  28.061 3.617  -3.567 -3.005 H30 A1IMY 69 
A1IMY H33 H33 H 0 1 N N N N N N 17.040 8.271  27.598 7.532  2.525  2.620  H33 A1IMY 70 
A1IMY H34 H34 H 0 1 N N N N N N 18.353 9.231  26.836 7.241  3.903  1.533  H34 A1IMY 71 
A1IMY H35 H35 H 0 1 N N N N N N 16.706 9.235  26.120 5.977  3.389  2.675  H35 A1IMY 72 
A1IMY H36 H36 H 0 1 N N N N N N 19.295 8.540  24.613 6.902  0.990  -0.748 H36 A1IMY 73 
A1IMY H37 H37 H 0 1 N N N N N N 18.722 7.032  23.823 7.778  2.511  -0.454 H37 A1IMY 74 
A1IMY H38 H38 H 0 1 N N N N N N 17.657 8.477  23.877 8.083  1.094  0.579  H38 A1IMY 75 
A1IMY H39 H39 H 0 1 N N N N N N 15.732 6.897  25.328 5.178  3.660  -0.113 H39 A1IMY 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IMY C13 C12 SING N N 1  
A1IMY C13 C14 SING N N 2  
A1IMY C12 C11 SING N N 3  
A1IMY C14 C11 SING N N 4  
A1IMY C11 C10 SING N N 5  
A1IMY C10 C8  SING N N 6  
A1IMY F3  C2  SING N N 7  
A1IMY C26 C24 SING N N 8  
A1IMY C26 C27 SING N N 9  
A1IMY C8  N7  SING N N 10 
A1IMY C8  C15 SING N N 11 
A1IMY O6  C5  DOUB N N 12 
A1IMY N7  C5  SING N N 13 
A1IMY F28 C27 SING N N 14 
A1IMY C5  C2  SING N N 15 
A1IMY C24 N17 SING N N 16 
A1IMY C24 C23 SING N N 17 
A1IMY F29 C27 SING N N 18 
A1IMY C27 C20 SING N N 19 
A1IMY C2  F1  SING N N 20 
A1IMY C2  F4  SING N N 21 
A1IMY C15 N17 SING N N 22 
A1IMY C15 O16 DOUB N N 23 
A1IMY N17 C18 SING N N 24 
A1IMY C23 C22 SING N N 25 
A1IMY C20 C18 SING N N 26 
A1IMY C20 C22 SING N N 27 
A1IMY C18 C30 SING N N 28 
A1IMY C30 O31 DOUB N N 29 
A1IMY C30 N32 SING N N 30 
A1IMY N32 C33 SING N N 31 
A1IMY C42 C40 SING N N 32 
A1IMY C37 C33 SING N N 33 
A1IMY C37 C38 SING N N 34 
A1IMY C33 C35 SING N N 35 
A1IMY O45 C44 DOUB N N 36 
A1IMY N43 C44 SING N N 37 
A1IMY N43 C40 SING N N 38 
A1IMY C44 C38 SING N N 39 
A1IMY C40 C39 SING N N 40 
A1IMY C40 C41 SING N N 41 
A1IMY C38 C39 SING N N 42 
A1IMY C35 N36 DOUB N N 43 
A1IMY C8  H1  SING N N 44 
A1IMY C11 H2  SING N N 45 
A1IMY C12 H3  SING N N 46 
A1IMY C12 H4  SING N N 47 
A1IMY C18 H5  SING N N 48 
A1IMY C23 H6  SING N N 49 
A1IMY C23 H7  SING N N 50 
A1IMY C24 H8  SING N N 51 
A1IMY C33 H9  SING N N 52 
A1IMY C35 H10 SING N N 53 
A1IMY C37 H12 SING N N 54 
A1IMY C37 H13 SING N N 55 
A1IMY C38 H14 SING N N 56 
A1IMY C39 H15 SING N N 57 
A1IMY C39 H16 SING N N 58 
A1IMY N7  H17 SING N N 59 
A1IMY C10 H18 SING N N 60 
A1IMY C10 H19 SING N N 61 
A1IMY C13 H20 SING N N 62 
A1IMY C13 H21 SING N N 63 
A1IMY C14 H22 SING N N 64 
A1IMY C14 H23 SING N N 65 
A1IMY C20 H24 SING N N 66 
A1IMY C22 H25 SING N N 67 
A1IMY C22 H26 SING N N 68 
A1IMY C26 H27 SING N N 69 
A1IMY C26 H28 SING N N 70 
A1IMY N32 H29 SING N N 71 
A1IMY N36 H30 SING N N 72 
A1IMY C41 H33 SING N N 73 
A1IMY C41 H34 SING N N 74 
A1IMY C41 H35 SING N N 75 
A1IMY C42 H36 SING N N 76 
A1IMY C42 H37 SING N N 77 
A1IMY C42 H38 SING N N 78 
A1IMY N43 H39 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IMY InChI            InChI                1.06  "InChI=1S/C26H36F5N5O4/c1-24(2)10-14(20(37)35-24)9-15(12-32)33-21(38)19-17-7-6-16(11-25(17,27)28)36(19)22(39)18(8-13-4-3-5-13)34-23(40)26(29,30)31/h12-19,32H,3-11H2,1-2H3,(H,33,38)(H,34,40)(H,35,37)/t14-,15-,16-,17-,18+,19-/m0/s1" 
A1IMY InChIKey         InChI                1.06  KLQWCIBSZOJHLB-VIUKOLAESA-N                                                                                                                                                                                                            
A1IMY SMILES_CANONICAL CACTVS               3.385 "CC1(C)C[C@H](C[C@H](NC(=O)[C@@H]2[C@@H]3CC[C@@H](CC3(F)F)N2C(=O)[C@@H](CC4CCC4)NC(=O)C(F)(F)F)C=N)C(=O)N1"                                                                                                                            
A1IMY SMILES           CACTVS               3.385 "CC1(C)C[CH](C[CH](NC(=O)[CH]2[CH]3CC[CH](CC3(F)F)N2C(=O)[CH](CC4CCC4)NC(=O)C(F)(F)F)C=N)C(=O)N1"                                                                                                                                      
A1IMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C[C@@H](C(=O)N1)C[C@@H](C=N)NC(=O)[C@@H]2[C@@H]3CC[C@H](N2C(=O)[C@@H](CC4CCC4)NC(=O)C(F)(F)F)CC3(F)F)C"                                                                                                                           
A1IMY SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(CC(C(=O)N1)CC(C=N)NC(=O)C2C3CCC(N2C(=O)C(CC4CCC4)NC(=O)C(F)(F)F)CC3(F)F)C"                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           A1IMY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{S},3~{S},4~{S})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-5,5-dimethyl-2-oxidanylidene-pyrrolidin-3-yl]propan-2-yl]-2-[(2~{R})-3-cyclobutyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]propanoyl]-5,5-bis(fluoranyl)-2-azabicyclo[2.2.2]octane-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IMY "Create component" 2024-08-28 PDBE 
A1IMY "Modify PCM"       2024-09-27 PDBE 
A1IMY "Initial release"  2024-12-04 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1IMY 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C35 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
