data_A1IT1
# 
_chem_comp.id                                    A1IT1 
_chem_comp.name                                  "(3~{R})-3-[(3~{R})-3-phenyl-4-(phenylmethyl)piperazin-1-yl]carbonyl-2,3-dihydroinden-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H26 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(3R)-3-[(3R)-4-benzyl-3-phenyl-piperidine-1-carbonyl]indan-1-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-11-13 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.508 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IT1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9HDJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IT1 C2  C1  C 0 1 Y N N N N N -23.591 -2.532 20.693 -6.985 0.584  0.301  C2  A1IT1 1  
A1IT1 C3  C2  C 0 1 Y N N N N N -24.782 -1.813 20.266 -6.287 0.951  1.439  C3  A1IT1 2  
A1IT1 C4  C3  C 0 1 Y N N N N N -24.684 -0.752 19.362 -4.965 0.576  1.595  C4  A1IT1 3  
A1IT1 C5  C4  C 0 1 Y N N N N N -23.334 -0.367 18.832 -4.330 -0.167 0.618  C5  A1IT1 4  
A1IT1 C6  C5  C 0 1 Y N N N N N -22.189 -1.070 19.235 -5.024 -0.541 -0.532 C6  A1IT1 5  
A1IT1 C7  C6  C 0 1 N N R N N N -22.927 0.746  17.837 -2.915 -0.688 0.547  C7  A1IT1 6  
A1IT1 C8  C7  C 0 1 N N N N N N -21.408 0.736  17.783 -2.798 -1.438 -0.787 C8  A1IT1 7  
A1IT1 C11 C8  C 0 1 N N N N N N -24.818 2.642  16.272 -0.099 -1.157 0.438  C11 A1IT1 8  
A1IT1 C12 C9  C 0 1 N N N N N N -25.955 3.170  15.370 0.894  -1.230 -0.727 C12 A1IT1 9  
A1IT1 C13 C10 C 0 1 N N R N N N -24.447 2.112  13.547 1.333  1.152  -0.607 C13 A1IT1 10 
A1IT1 C14 C11 C 0 1 N N N N N N -24.630 0.978  14.492 0.357  1.323  0.569  C14 A1IT1 11 
A1IT1 C17 C12 C 0 1 Y N N N N N -27.270 5.511  12.682 4.843  -1.476 0.069  C17 A1IT1 12 
A1IT1 C18 C13 C 0 1 Y N N N N N -28.119 6.702  12.802 5.652  -2.589 -0.056 C18 A1IT1 13 
A1IT1 C19 C14 C 0 1 Y N N N N N -29.371 6.606  13.429 5.174  -3.835 0.303  C19 A1IT1 14 
A1IT1 C20 C15 C 0 1 Y N N N N N -29.816 5.334  13.960 3.886  -3.968 0.788  C20 A1IT1 15 
A1IT1 C21 C16 C 0 1 Y N N N N N -29.008 4.199  13.840 3.077  -2.854 0.913  C21 A1IT1 16 
A1IT1 C22 C17 C 0 1 Y N N N N N -24.408 1.493  12.102 2.427  2.183  -0.507 C22 A1IT1 17 
A1IT1 C23 C18 C 0 1 Y N N N N N -25.239 0.409  11.744 3.645  1.960  -1.123 C23 A1IT1 18 
A1IT1 C25 C19 C 0 1 Y N N N N N -24.242 0.384  9.505  4.436  4.074  -0.323 C25 A1IT1 19 
A1IT1 C26 C20 C 0 1 Y N N N N N -23.364 1.478  9.871  3.216  4.299  0.288  C26 A1IT1 20 
A1IT1 C27 C21 C 0 1 Y N N N N N -23.445 2.006  11.145 2.212  3.353  0.197  C27 A1IT1 21 
A1IT1 C1  C22 C 0 1 Y N N N N N -22.328 -2.182 20.192 -6.368 -0.161 -0.679 C1  A1IT1 22 
A1IT1 C10 C23 C 0 1 N N N N N N -23.377 0.500  16.453 -1.938 0.459  0.585  C10 A1IT1 23 
A1IT1 C15 C24 C 0 1 N N N N N N -26.828 3.011  13.074 2.673  -0.394 0.689  C15 A1IT1 24 
A1IT1 C16 C25 C 0 1 Y N N N N N -27.712 4.280  13.216 3.555  -1.608 0.553  C16 A1IT1 25 
A1IT1 C24 C26 C 0 1 Y N N N N N -25.158 -0.143 10.416 4.649  2.906  -1.031 C24 A1IT1 26 
A1IT1 C9  C27 C 0 1 N N N N N N -20.943 -0.438 18.504 -4.158 -1.323 -1.431 C9  A1IT1 27 
A1IT1 N1  N1  N 0 1 N N N N N N -24.246 1.338  15.773 -0.613 0.218  0.533  N1  A1IT1 28 
A1IT1 N2  N2  N 0 1 N N N N N N -25.582 3.100  13.886 1.921  -0.194 -0.557 N2  A1IT1 29 
A1IT1 O1  O1  O 0 1 N N N N N N -19.704 -0.660 18.367 -4.480 -1.786 -2.504 O1  A1IT1 30 
A1IT1 O2  O2  O 0 1 N N N N N N -22.981 -0.551 15.928 -2.345 1.599  0.662  O2  A1IT1 31 
A1IT1 H2  H1  H 0 1 N N N N N N -23.680 -3.342 21.402 -8.017 0.880  0.183  H2  A1IT1 32 
A1IT1 H3  H2  H 0 1 N N N N N N -25.749 -2.102 20.651 -6.776 1.532  2.206  H3  A1IT1 33 
A1IT1 H4  H3  H 0 1 N N N N N N -25.568 -0.216 19.049 -4.426 0.865  2.485  H4  A1IT1 34 
A1IT1 H5  H4  H 0 1 N N N N N N -23.288 1.720  18.199 -2.725 -1.369 1.377  H5  A1IT1 35 
A1IT1 H6  H5  H 0 1 N N N N N N -21.071 0.690  16.737 -2.038 -0.973 -1.416 H6  A1IT1 36 
A1IT1 H7  H6  H 0 1 N N N N N N -21.011 1.646  18.256 -2.555 -2.486 -0.612 H7  A1IT1 37 
A1IT1 H9  H7  H 0 1 N N N N N N -24.014 3.392  16.302 -0.925 -1.845 0.260  H9  A1IT1 38 
A1IT1 H8  H8  H 0 1 N N N N N N -25.214 2.489  17.287 0.405  -1.423 1.367  H8  A1IT1 39 
A1IT1 H11 H9  H 0 1 N N N N N N -26.164 4.217  15.636 1.367  -2.212 -0.740 H11 A1IT1 40 
A1IT1 H10 H10 H 0 1 N N N N N N -26.856 2.562  15.540 0.365  -1.069 -1.666 H10 A1IT1 41 
A1IT1 H12 H11 H 0 1 N N N N N N -23.481 2.601  13.742 0.797  1.280  -1.547 H12 A1IT1 42 
A1IT1 H14 H12 H 0 1 N N N N N N -25.690 0.685  14.502 0.908  1.298  1.509  H14 A1IT1 43 
A1IT1 H13 H13 H 0 1 N N N N N N -24.018 0.128  14.158 -0.168 2.274  0.474  H13 A1IT1 44 
A1IT1 H17 H14 H 0 1 N N N N N N -26.312 5.575  12.188 5.218  -0.502 -0.208 H17 A1IT1 45 
A1IT1 H18 H15 H 0 1 N N N N N N -27.781 7.650  12.409 6.658  -2.486 -0.435 H18 A1IT1 46 
A1IT1 H19 H16 H 0 1 N N N N N N -30.001 7.479  13.515 5.806  -4.706 0.205  H19 A1IT1 47 
A1IT1 H20 H17 H 0 1 N N N N N N -30.775 5.262  14.450 3.512  -4.941 1.069  H20 A1IT1 48 
A1IT1 H21 H18 H 0 1 N N N N N N -29.360 3.251  14.219 2.070  -2.957 1.291  H21 A1IT1 49 
A1IT1 H22 H19 H 0 1 N N N N N N -25.932 -0.004 12.462 3.811  1.048  -1.677 H22 A1IT1 50 
A1IT1 H24 H20 H 0 1 N N N N N N -24.186 -0.031 8.509  5.220  4.813  -0.252 H24 A1IT1 51 
A1IT1 H25 H21 H 0 1 N N N N N N -22.657 1.875  9.158  3.050  5.211  0.841  H25 A1IT1 52 
A1IT1 H26 H22 H 0 1 N N N N N N -22.784 2.810  11.432 1.260  3.529  0.674  H26 A1IT1 53 
A1IT1 H1  H23 H 0 1 N N N N N N -21.453 -2.730 20.509 -6.915 -0.445 -1.566 H1  A1IT1 54 
A1IT1 H16 H24 H 0 1 N N N N N N -27.407 2.137  13.408 1.976  -0.542 1.514  H16 A1IT1 55 
A1IT1 H15 H25 H 0 1 N N N N N N -26.553 2.887  12.016 3.289  0.483  0.886  H15 A1IT1 56 
A1IT1 H23 H26 H 0 1 N N N N N N -25.803 -0.960 10.127 5.601  2.730  -1.509 H23 A1IT1 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IT1 C25 C26 DOUB Y N 1  
A1IT1 C25 C24 SING Y N 2  
A1IT1 C26 C27 SING Y N 3  
A1IT1 C24 C23 DOUB Y N 4  
A1IT1 C27 C22 DOUB Y N 5  
A1IT1 C23 C22 SING Y N 6  
A1IT1 C22 C13 SING N N 7  
A1IT1 C17 C18 DOUB Y N 8  
A1IT1 C17 C16 SING Y N 9  
A1IT1 C18 C19 SING Y N 10 
A1IT1 C15 C16 SING N N 11 
A1IT1 C15 N2  SING N N 12 
A1IT1 C16 C21 DOUB Y N 13 
A1IT1 C19 C20 DOUB Y N 14 
A1IT1 C13 N2  SING N N 15 
A1IT1 C13 C14 SING N N 16 
A1IT1 C21 C20 SING Y N 17 
A1IT1 N2  C12 SING N N 18 
A1IT1 C14 N1  SING N N 19 
A1IT1 C12 C11 SING N N 20 
A1IT1 N1  C11 SING N N 21 
A1IT1 N1  C10 SING N N 22 
A1IT1 O2  C10 DOUB N N 23 
A1IT1 C10 C7  SING N N 24 
A1IT1 C8  C7  SING N N 25 
A1IT1 C8  C9  SING N N 26 
A1IT1 C7  C5  SING N N 27 
A1IT1 O1  C9  DOUB N N 28 
A1IT1 C9  C6  SING N N 29 
A1IT1 C5  C6  DOUB Y N 30 
A1IT1 C5  C4  SING Y N 31 
A1IT1 C6  C1  SING Y N 32 
A1IT1 C4  C3  DOUB Y N 33 
A1IT1 C1  C2  DOUB Y N 34 
A1IT1 C3  C2  SING Y N 35 
A1IT1 C2  H2  SING N N 36 
A1IT1 C3  H3  SING N N 37 
A1IT1 C4  H4  SING N N 38 
A1IT1 C7  H5  SING N N 39 
A1IT1 C8  H6  SING N N 40 
A1IT1 C8  H7  SING N N 41 
A1IT1 C11 H9  SING N N 42 
A1IT1 C11 H8  SING N N 43 
A1IT1 C12 H11 SING N N 44 
A1IT1 C12 H10 SING N N 45 
A1IT1 C13 H12 SING N N 46 
A1IT1 C14 H14 SING N N 47 
A1IT1 C14 H13 SING N N 48 
A1IT1 C17 H17 SING N N 49 
A1IT1 C18 H18 SING N N 50 
A1IT1 C19 H19 SING N N 51 
A1IT1 C20 H20 SING N N 52 
A1IT1 C21 H21 SING N N 53 
A1IT1 C23 H22 SING N N 54 
A1IT1 C25 H24 SING N N 55 
A1IT1 C26 H25 SING N N 56 
A1IT1 C27 H26 SING N N 57 
A1IT1 C1  H1  SING N N 58 
A1IT1 C15 H16 SING N N 59 
A1IT1 C15 H15 SING N N 60 
A1IT1 C24 H23 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IT1 InChI            InChI                1.06  "InChI=1S/C27H26N2O2/c30-26-17-24(22-13-7-8-14-23(22)26)27(31)29-16-15-28(18-20-9-3-1-4-10-20)25(19-29)21-11-5-2-6-12-21/h1-14,24-25H,15-19H2/t24-,25+/m1/s1" 
A1IT1 InChIKey         InChI                1.06  UTDHFZWVCNRNGD-RPBOFIJWSA-N                                                                                                                                   
A1IT1 SMILES_CANONICAL CACTVS               3.385 "O=C1C[C@@H](C(=O)N2CCN(Cc3ccccc3)[C@@H](C2)c4ccccc4)c5ccccc15"                                                                                               
A1IT1 SMILES           CACTVS               3.385 "O=C1C[CH](C(=O)N2CCN(Cc3ccccc3)[CH](C2)c4ccccc4)c5ccccc15"                                                                                                   
A1IT1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCN(C[C@H]2c3ccccc3)C(=O)[C@@H]4CC(=O)c5c4cccc5"                                                                                                
A1IT1 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCN(CC2c3ccccc3)C(=O)C4CC(=O)c5c4cccc5"                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           A1IT1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R})-3-[(3~{R})-3-phenyl-4-(phenylmethyl)piperazin-1-yl]carbonyl-2,3-dihydroinden-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IT1 "Create component" 2024-11-13 PDBE 
A1IT1 "Initial release"  2024-11-27 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1IT1 
_pdbx_chem_comp_synonyms.name         "(3R)-3-[(3R)-4-benzyl-3-phenyl-piperidine-1-carbonyl]indan-1-one" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
