data_A1L08
# 
_chem_comp.id                                    A1L08 
_chem_comp.name                                  "3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-[(phenylmethyl)amino]hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-24 
_chem_comp.pdbx_modified_date                    2025-01-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        423.548 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1L08 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Z7D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1L08 C10 C1  C 0 1 N N N N N N 33.372 -3.297  181.131 1.081  2.672  0.558  C10 A1L08 1  
A1L08 C12 C2  C 0 1 N N N N N N 35.010 -3.167  179.148 0.514  4.989  1.302  C12 A1L08 2  
A1L08 C16 C3  C 0 1 N N N N N N 33.219 -8.975  180.752 4.826  -1.755 0.140  C16 A1L08 3  
A1L08 C17 C4  C 0 1 Y N N N N N 34.627 -9.095  181.323 6.250  -1.288 -0.015 C17 A1L08 4  
A1L08 C19 C5  C 0 1 Y N N N N N 36.186 -9.983  182.971 8.256  -0.396 0.941  C19 A1L08 5  
A1L08 C20 C6  C 0 1 Y N N N N N 37.255 -9.304  182.420 8.863  -0.431 -0.301 C20 A1L08 6  
A1L08 C22 C7  C 0 1 Y N N N N N 35.726 -8.416  180.796 6.855  -1.318 -1.257 C22 A1L08 7  
A1L08 C23 C8  C 0 1 Y N N N N N 27.681 -4.524  183.291 -3.224 0.709  -1.044 C23 A1L08 8  
A1L08 C24 C9  C 0 1 N N N N N N 28.491 -3.491  184.006 -3.240 1.936  -1.918 C24 A1L08 9  
A1L08 C25 C10 C 0 1 Y N N N N N 26.270 -4.748  183.334 -4.331 -0.048 -0.644 C25 A1L08 10 
A1L08 C26 C11 C 0 1 N N N N N N 25.195 -4.094  184.075 -5.762 0.113  -0.944 C26 A1L08 11 
A1L08 C28 C12 C 0 1 N N N N N N 23.755 -4.576  183.887 -6.641 -1.067 -0.554 C28 A1L08 12 
A1L08 C29 C13 C 0 1 N N N N N N 23.491 -5.236  182.522 -6.203 -1.560 0.829  C29 A1L08 13 
A1L08 C30 C14 C 0 1 N N N N N N 22.110 -5.862  182.511 -6.254 -0.394 1.819  C30 A1L08 14 
A1L08 C31 C15 C 0 1 N N N N N N 23.532 -4.131  181.417 -7.157 -2.661 1.297  C31 A1L08 15 
A1L08 C01 C16 C 0 1 N N N N N N 24.538 -6.302  182.322 -4.777 -2.116 0.779  C01 A1L08 16 
A1L08 C02 C17 C 0 1 Y N N N N N 25.955 -5.813  182.495 -3.865 -1.090 0.158  C02 A1L08 17 
A1L08 N03 N1  N 0 1 Y N N N N N 27.112 -6.231  181.942 -2.539 -0.979 0.244  N03 A1L08 18 
A1L08 C04 C18 C 0 1 Y N N N N N 28.214 -5.473  182.416 -2.123 0.116  -0.491 C04 A1L08 19 
A1L08 C05 C19 C 0 1 N N N N N N 29.550 -5.736  181.932 -0.735 0.571  -0.642 C05 A1L08 20 
A1L08 O06 O1  O 0 1 N N N N N N 29.669 -6.528  181.029 -0.487 1.552  -1.317 O06 A1L08 21 
A1L08 N07 N2  N 0 1 N N N N N N 30.699 -5.174  182.362 0.264  -0.099 -0.034 N07 A1L08 22 
A1L08 C08 C20 C 0 1 N N S N N N 32.000 -5.442  181.807 1.648  0.355  -0.185 C08 A1L08 23 
A1L08 C09 C21 C 0 1 N N N N N N 33.193 -4.496  182.106 1.944  1.443  0.850  C09 A1L08 24 
A1L08 C11 C22 C 0 1 N N N N N N 33.661 -3.592  179.661 1.377  3.760  1.593  C11 A1L08 25 
A1L08 C13 C23 C 0 1 N N N N N N 32.335 -6.938  181.878 2.584  -0.807 0.026  C13 A1L08 26 
A1L08 O14 O2  O 0 1 N N N N N N 32.078 -7.543  182.904 2.138  -1.907 0.278  O14 A1L08 27 
A1L08 N15 N3  N 0 1 N N N N N N 32.833 -7.588  180.784 3.916  -0.625 -0.065 N15 A1L08 28 
A1L08 C18 C24 C 0 1 Y N N N N N 34.913 -9.876  182.443 6.949  -0.824 1.083  C18 A1L08 29 
A1L08 C21 C25 C 0 1 Y N N N N N 37.007 -8.511  181.318 8.162  -0.890 -1.400 C21 A1L08 30 
A1L08 O27 O3  O 0 1 N N N N N N 25.388 -3.173  184.859 -6.210 1.113  -1.464 O27 A1L08 31 
A1L08 H1  H1  H 0 1 N N N N N N 34.207 -2.691  181.511 1.309  3.048  -0.439 H1  A1L08 32 
A1L08 H2  H2  H 0 1 N N N N N N 32.444 -2.707  181.168 0.028  2.397  0.611  H2  A1L08 33 
A1L08 H3  H3  H 0 1 N N N N N N 35.098 -3.432  178.084 -0.539 4.714  1.355  H3  A1L08 34 
A1L08 H4  H4  H 0 1 N N N N N N 35.121 -2.079  179.265 0.725  5.764  2.039  H4  A1L08 35 
A1L08 H5  H5  H 0 1 N N N N N N 35.798 -3.679  179.720 0.742  5.365  0.304  H5  A1L08 36 
A1L08 H6  H6  H 0 1 N N N N N N 32.520 -9.569  181.359 4.615  -2.530 -0.596 H6  A1L08 37 
A1L08 H7  H7  H 0 1 N N N N N N 33.206 -9.340  179.715 4.683  -2.159 1.143  H7  A1L08 38 
A1L08 H8  H8  H 0 1 N N N N N N 36.348 -10.612 183.834 8.803  -0.037 1.800  H8  A1L08 39 
A1L08 H9  H9  H 0 1 N N N N N N 38.248 -9.390  182.836 9.885  -0.099 -0.412 H9  A1L08 40 
A1L08 H10 H10 H 0 1 N N N N N N 35.571 -7.782  179.935 6.308  -1.677 -2.116 H10 A1L08 41 
A1L08 H11 H11 H 0 1 N N N N N N 28.558 -2.584  183.387 -3.349 2.825  -1.296 H11 A1L08 42 
A1L08 H12 H12 H 0 1 N N N N N N 28.009 -3.246  184.964 -2.307 1.996  -2.478 H12 A1L08 43 
A1L08 H13 H13 H 0 1 N N N N N N 29.502 -3.883  184.193 -4.078 1.875  -2.614 H13 A1L08 44 
A1L08 H14 H14 H 0 1 N N N N N N 23.084 -3.710  183.989 -7.683 -0.752 -0.518 H14 A1L08 45 
A1L08 H15 H15 H 0 1 N N N N N N 23.530 -5.309  184.675 -6.524 -1.868 -1.283 H15 A1L08 46 
A1L08 H16 H16 H 0 1 N N N N N N 22.056 -6.645  183.282 -7.273 -0.009 1.874  H16 A1L08 47 
A1L08 H17 H17 H 0 1 N N N N N N 21.356 -5.089  182.720 -5.944 -0.741 2.805  H17 A1L08 48 
A1L08 H18 H18 H 0 1 N N N N N N 21.917 -6.306  181.523 -5.584 0.397  1.484  H18 A1L08 49 
A1L08 H19 H19 H 0 1 N N N N N N 22.749 -3.384  181.615 -7.131 -3.489 0.589  H19 A1L08 50 
A1L08 H20 H20 H 0 1 N N N N N N 24.517 -3.641  181.425 -6.849 -3.014 2.281  H20 A1L08 51 
A1L08 H21 H21 H 0 1 N N N N N N 23.360 -4.591  180.433 -8.170 -2.263 1.354  H21 A1L08 52 
A1L08 H22 H22 H 0 1 N N N N N N 24.433 -6.703  181.303 -4.438 -2.341 1.791  H22 A1L08 53 
A1L08 H23 H23 H 0 1 N N N N N N 24.358 -7.105  183.052 -4.763 -3.027 0.180  H23 A1L08 54 
A1L08 H24 H24 H 0 1 N N N N N N 27.184 -6.979  181.282 -1.956 -1.577 0.738  H24 A1L08 55 
A1L08 H25 H25 H 0 1 N N N N N N 30.643 -4.525  183.121 0.066  -0.881 0.504  H25 A1L08 56 
A1L08 H26 H26 H 0 1 N N N N N N 31.847 -5.288  180.729 1.791  0.759  -1.188 H26 A1L08 57 
A1L08 H27 H27 H 0 1 N N N N N N 34.115 -5.096  182.075 2.998  1.717  0.797  H27 A1L08 58 
A1L08 H28 H28 H 0 1 N N N N N N 33.055 -4.089  183.118 1.717  1.067  1.847  H28 A1L08 59 
A1L08 H29 H29 H 0 1 N N N N N N 32.897 -3.078  179.060 1.150  3.384  2.590  H29 A1L08 60 
A1L08 H30 H30 H 0 1 N N N N N N 33.574 -4.679  179.514 2.431  4.034  1.540  H30 A1L08 61 
A1L08 H31 H31 H 0 1 N N N N N N 32.937 -7.060  179.941 4.273  0.254  -0.267 H31 A1L08 62 
A1L08 H32 H32 H 0 1 N N N N N N 34.108 -10.418 182.916 6.475  -0.796 2.053  H32 A1L08 63 
A1L08 H33 H33 H 0 1 N N N N N N 37.816 -7.961  180.859 8.635  -0.914 -2.371 H33 A1L08 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1L08 C12 C11 SING N N 1  
A1L08 C11 C10 SING N N 2  
A1L08 C16 N15 SING N N 3  
A1L08 C16 C17 SING N N 4  
A1L08 N15 C13 SING N N 5  
A1L08 C22 C21 DOUB Y N 6  
A1L08 C22 C17 SING Y N 7  
A1L08 O06 C05 DOUB N N 8  
A1L08 C10 C09 SING N N 9  
A1L08 C21 C20 SING Y N 10 
A1L08 C17 C18 DOUB Y N 11 
A1L08 C31 C29 SING N N 12 
A1L08 C08 C13 SING N N 13 
A1L08 C08 C09 SING N N 14 
A1L08 C08 N07 SING N N 15 
A1L08 C13 O14 DOUB N N 16 
A1L08 C05 N07 SING N N 17 
A1L08 C05 C04 SING N N 18 
A1L08 N03 C04 SING Y N 19 
A1L08 N03 C02 SING Y N 20 
A1L08 C01 C02 SING N N 21 
A1L08 C01 C29 SING N N 22 
A1L08 C04 C23 DOUB Y N 23 
A1L08 C20 C19 DOUB Y N 24 
A1L08 C18 C19 SING Y N 25 
A1L08 C02 C25 DOUB Y N 26 
A1L08 C30 C29 SING N N 27 
A1L08 C29 C28 SING N N 28 
A1L08 C23 C25 SING Y N 29 
A1L08 C23 C24 SING N N 30 
A1L08 C25 C26 SING N N 31 
A1L08 C28 C26 SING N N 32 
A1L08 C26 O27 DOUB N N 33 
A1L08 C10 H1  SING N N 34 
A1L08 C10 H2  SING N N 35 
A1L08 C12 H3  SING N N 36 
A1L08 C12 H4  SING N N 37 
A1L08 C12 H5  SING N N 38 
A1L08 C16 H6  SING N N 39 
A1L08 C16 H7  SING N N 40 
A1L08 C19 H8  SING N N 41 
A1L08 C20 H9  SING N N 42 
A1L08 C22 H10 SING N N 43 
A1L08 C24 H11 SING N N 44 
A1L08 C24 H12 SING N N 45 
A1L08 C24 H13 SING N N 46 
A1L08 C28 H14 SING N N 47 
A1L08 C28 H15 SING N N 48 
A1L08 C30 H16 SING N N 49 
A1L08 C30 H17 SING N N 50 
A1L08 C30 H18 SING N N 51 
A1L08 C31 H19 SING N N 52 
A1L08 C31 H20 SING N N 53 
A1L08 C31 H21 SING N N 54 
A1L08 C01 H22 SING N N 55 
A1L08 C01 H23 SING N N 56 
A1L08 N03 H24 SING N N 57 
A1L08 N07 H25 SING N N 58 
A1L08 C08 H26 SING N N 59 
A1L08 C09 H27 SING N N 60 
A1L08 C09 H28 SING N N 61 
A1L08 C11 H29 SING N N 62 
A1L08 C11 H30 SING N N 63 
A1L08 N15 H31 SING N N 64 
A1L08 C18 H32 SING N N 65 
A1L08 C21 H33 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1L08 InChI            InChI                1.06  "InChI=1S/C25H33N3O3/c1-5-6-12-18(23(30)26-15-17-10-8-7-9-11-17)28-24(31)22-16(2)21-19(27-22)13-25(3,4)14-20(21)29/h7-11,18,27H,5-6,12-15H2,1-4H3,(H,26,30)(H,28,31)/t18-/m0/s1" 
A1L08 InChIKey         InChI                1.06  FKYWIFNZDJPACP-SFHVURJKSA-N                                                                                                                                                      
A1L08 SMILES_CANONICAL CACTVS               3.385 "CCCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccccc3"                                                                                                                    
A1L08 SMILES           CACTVS               3.385 "CCCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccccc3"                                                                                                                     
A1L08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)NCc1ccccc1)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C"                                                                                                                 
A1L08 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)NCc1ccccc1)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           A1L08 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-[(phenylmethyl)amino]hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1L08 "Create component" 2024-04-24 PDBJ 
A1L08 "Initial release"  2025-01-22 RCSB 
# 
