data_A1LUV
# 
_chem_comp.id                                    A1LUV 
_chem_comp.name                                  "(5S)-5-HYDROXY-LYSINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H15 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         "[5-azanyl-2,6-bis(oxidanyl)-6-oxidanylidene-hexyl]azanium" 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2024-01-22 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        163.195 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     A1LUV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LUV N   N   N 0 1 N N N Y Y N 2.953  1.606  0.835  1.682  1.737  0.488  N   A1LUV 1  
A1LUV CA  CA  C 0 1 N N S N Y N 2.297  0.434  0.254  1.640  0.273  0.601  CA  A1LUV 2  
A1LUV CB  CB  C 0 1 N N N N N N 0.771  0.544  0.366  0.394  -0.258 -0.112 CB  A1LUV 3  
A1LUV CG  CG  C 0 1 N N N N N N 0.029  -0.773 0.148  -0.858 0.241  0.611  CG  A1LUV 4  
A1LUV CD  CD  C 0 1 N N S N N N -1.447 -0.692 0.539  -2.104 -0.290 -0.101 CD  A1LUV 5  
A1LUV O1  O1  O 0 1 N N N N N N -2.020 -1.996 0.669  -2.177 0.270  -1.414 O1  A1LUV 6  
A1LUV CE  CE  C 0 1 N N N N N N -2.252 0.082  -0.495 -3.352 0.103  0.691  CE  A1LUV 7  
A1LUV NZ  NZ  N 1 1 N N N N N N -3.683 0.127  -0.107 -4.537 -0.507 0.074  NZ  A1LUV 8  
A1LUV C   C   C 0 1 N N N N Y Y 2.718  0.216  -1.195 2.872  -0.316 -0.035 C   A1LUV 9  
A1LUV OXT OXT O 0 1 N Y N N Y Y 2.763  -1.056 -1.520 3.262  -1.560 0.283  OXT A1LUV 10 
A1LUV O   O   O 0 1 N N N N Y Y 2.976  1.121  -1.956 3.510  0.332  -0.831 O   A1LUV 11 
A1LUV H   H   H 0 1 N N N Y Y N 3.945  1.510  0.750  2.461  2.118  1.005  H   A1LUV 12 
A1LUV H2  H2  H 0 1 N Y N Y Y N 2.655  2.429  0.351  1.716  2.024  -0.479 H2  A1LUV 13 
A1LUV HA  HA  H 0 1 N N N N Y N 2.606  -0.453 0.826  1.604  -0.009 1.653  HA  A1LUV 14 
A1LUV HB2 HB2 H 0 1 N N N N N N 0.525  0.916  1.372  0.386  0.098  -1.142 HB2 A1LUV 15 
A1LUV HB3 HB3 H 0 1 N N N N N N 0.421  1.265  -0.387 0.409  -1.348 -0.104 HB3 A1LUV 16 
A1LUV HG2 HG2 H 0 1 N N N N N N 0.097  -1.043 -0.916 -0.850 -0.116 1.641  HG2 A1LUV 17 
A1LUV HG3 HG3 H 0 1 N N N N N N 0.511  -1.553 0.755  -0.873 1.331  0.604  HG3 A1LUV 18 
A1LUV HD2 HD2 H 0 1 N N N N N N -1.519 -0.162 1.500  -2.046 -1.377 -0.172 HD2 A1LUV 19 
A1LUV H9  H9  H 0 1 N N N N N N -2.935 -1.918 0.912  -2.230 1.235  -1.427 H9  A1LUV 20 
A1LUV HE2 HE2 H 0 1 N N N N N N -1.862 1.108  -0.564 -3.256 -0.248 1.719  HE2 A1LUV 21 
A1LUV HE3 HE3 H 0 1 N N N N N N -2.157 -0.412 -1.473 -3.458 1.188  0.687  HE3 A1LUV 22 
A1LUV HZ1 HZ1 H 0 1 N N N N N N -4.199 0.638  -0.794 -4.626 -0.181 -0.877 HZ1 A1LUV 23 
A1LUV HZ2 HZ2 H 0 1 N N N N N N -4.041 -0.805 -0.046 -4.439 -1.511 0.078  HZ2 A1LUV 24 
A1LUV HZ3 HZ3 H 0 1 N N N N N N -3.773 0.578  0.781  -5.360 -0.247 0.596  HZ3 A1LUV 25 
A1LUV HXT HXT H 0 1 N Y N N Y Y 3.025  -1.142 -2.429 4.059  -1.895 -0.151 HXT A1LUV 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LUV N   CA  SING N N 1  
A1LUV CA  CB  SING N N 2  
A1LUV CB  CG  SING N N 3  
A1LUV CG  CD  SING N N 4  
A1LUV CD  O1  SING N N 5  
A1LUV CD  CE  SING N N 6  
A1LUV CE  NZ  SING N N 7  
A1LUV CA  C   SING N N 8  
A1LUV C   OXT SING N N 9  
A1LUV C   O   DOUB N N 10 
A1LUV N   H   SING N N 11 
A1LUV N   H2  SING N N 12 
A1LUV CA  HA  SING N N 13 
A1LUV CB  HB2 SING N N 14 
A1LUV CB  HB3 SING N N 15 
A1LUV CG  HG2 SING N N 16 
A1LUV CG  HG3 SING N N 17 
A1LUV CD  HD2 SING N N 18 
A1LUV O1  H9  SING N N 19 
A1LUV CE  HE2 SING N N 20 
A1LUV CE  HE3 SING N N 21 
A1LUV NZ  HZ1 SING N N 22 
A1LUV NZ  HZ2 SING N N 23 
A1LUV NZ  HZ3 SING N N 24 
A1LUV OXT HXT SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LUV InChI            InChI                1.06  "InChI=1S/C6H14N2O3/c7-3-4(9)1-2-5(8)6(10)11/h4-5,9H,1-3,7-8H2,(H,10,11)/p+1/t4-,5-/m0/s1" 
A1LUV InChIKey         InChI                1.06  YSMODUONRAFBET-WHFBIAKZSA-O                                                                
A1LUV SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CC[C@H](O)C[NH3+])C(O)=O"                                                         
A1LUV SMILES           CACTVS               3.385 "N[CH](CC[CH](O)C[NH3+])C(O)=O"                                                            
A1LUV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(C(=O)O)N)C(C[NH3+])O"                                                                
A1LUV SMILES           "OpenEye OEToolkits" 2.0.7 "C(CC(C(=O)O)N)C(C[NH3+])O"                                                                
# 
_pdbx_chem_comp_identifier.comp_id           A1LUV 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[5-azanyl-2,6-bis(oxidanyl)-6-oxidanylidene-hexyl]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LUV "Create component"   2024-02-14 PDBE 
A1LUV "Modify descriptor"  2024-02-14 PDBE 
A1LUV "Other modification" 2024-02-14 PDBE 
A1LUV "Modify PCM"         2024-09-27 PDBE 
A1LUV "Initial release"    2024-12-25 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1LUV 
_pdbx_chem_comp_synonyms.name         "[5-azanyl-2,6-bis(oxidanyl)-6-oxidanylidene-hexyl]azanium" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1LUV 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Hydroxylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     PTM-0472 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      PTM-0044 
# 
