data_A1LWE
# 
_chem_comp.id                                    A1LWE 
_chem_comp.name                                  "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H18 N5 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-15 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LWE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XK9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LWE O36 O1  O 0 1 N N N N N N 30.753 69.900 -5.619  6.722  3.670  1.599  O36 A1LWE 1  
A1LWE C36 C1  C 0 1 N N N N N N 30.613 70.102 -6.831  6.435  2.832  0.761  C36 A1LWE 2  
A1LWE N31 N1  N 0 1 N N N N N N 30.006 69.126 -7.621  7.216  2.642  -0.325 N31 A1LWE 3  
A1LWE C32 C2  C 0 1 N N N N N N 29.771 69.220 -8.964  6.885  1.702  -1.255 C32 A1LWE 4  
A1LWE N32 N2  N 0 1 N N N N N N 29.156 68.173 -9.533  7.697  1.532  -2.348 N32 A1LWE 5  
A1LWE N33 N3  N 0 1 N N N N N N 30.126 70.275 -9.695  5.810  0.955  -1.136 N33 A1LWE 6  
A1LWE C35 C3  C 0 1 Y N N N N N 30.976 71.230 -7.591  5.278  2.030  0.905  C35 A1LWE 7  
A1LWE C34 C4  C 0 1 Y N N N N N 30.718 71.235 -8.944  4.990  1.086  -0.087 C34 A1LWE 8  
A1LWE N37 N4  N 0 1 Y N N N N N 31.571 72.426 -7.208  4.299  1.945  1.838  N37 A1LWE 9  
A1LWE C38 C5  C 0 1 Y N N N N N 31.647 73.128 -8.325  3.450  1.023  1.489  C38 A1LWE 10 
A1LWE N39 N5  N 0 1 Y N N N N N 31.177 72.439 -9.416  3.831  0.470  0.301  N39 A1LWE 11 
A1LWE C41 C6  C 0 1 N N R N N N 30.982 72.949 -10.777 3.135  -0.599 -0.420 C41 A1LWE 12 
A1LWE O44 O2  O 0 1 N N N N N N 31.790 74.097 -10.907 1.746  -0.648 -0.028 O44 A1LWE 13 
A1LWE C42 C7  C 0 1 N N R N N N 29.522 73.404 -10.994 3.709  -1.977 -0.023 C42 A1LWE 14 
A1LWE C46 C8  C 0 1 N N N N N N 28.885 71.857 -12.669 5.684  -3.260 -0.469 C46 A1LWE 15 
A1LWE O42 O3  O 0 1 N N N N N N 28.998 73.233 -12.297 4.651  -2.427 -0.999 O42 A1LWE 16 
A1LWE C43 C9  C 0 1 N N R N N N 29.585 74.914 -10.726 2.473  -2.905 0.004  C43 A1LWE 17 
A1LWE O43 O4  O 0 1 N N N N N N 28.570 75.762 -11.281 2.616  -3.957 -0.952 O43 A1LWE 18 
A1LWE C44 C10 C 0 1 N N R N N N 30.974 75.231 -11.288 1.297  -1.975 -0.381 C44 A1LWE 19 
A1LWE C45 C11 C 0 1 N N N N N N 31.624 76.485 -10.764 0.043  -2.342 0.415  C45 A1LWE 20 
A1LWE O45 O5  O 0 1 N N N N N N 31.898 76.319 -9.352  -1.039 -1.501 0.012  O45 A1LWE 21 
A1LWE PA  P1  P 0 1 N N N N N N 31.709 77.560 -8.375  -2.516 -1.609 0.644  PA  A1LWE 22 
A1LWE O1A O6  O 0 1 N N N N N N 32.199 77.135 -7.027  -3.159 -3.036 0.264  O1A A1LWE 23 
A1LWE O2A O7  O 0 1 N N N N N N 32.029 78.922 -9.050  -2.434 -1.483 2.116  O2A A1LWE 24 
A1LWE O1B O8  O 0 1 N N N N N N 30.096 77.420 -8.243  -3.440 -0.430 0.055  O1B A1LWE 25 
A1LWE PB  P2  P 0 1 N N N N N N 29.020 78.471 -8.842  -4.810 0.266  0.538  PB  A1LWE 26 
A1LWE O2B O9  O 0 1 N N N N N N 27.801 77.676 -9.155  -4.487 1.343  1.690  O2B A1LWE 27 
A1LWE O3B O10 O 0 1 N N N N N N 29.714 79.316 -9.861  -5.726 -0.767 1.072  O3B A1LWE 28 
A1LWE O3A O11 O 0 1 N N N N N N 28.782 79.439 -7.601  -5.505 1.006  -0.711 O3A A1LWE 29 
A1LWE PG  P3  P 0 1 N N N N N N 29.366 80.907 -7.287  -6.977 1.600  -0.980 PG  A1LWE 30 
A1LWE O1G O12 O 0 1 N N N N N N 29.608 80.825 -5.828  -7.216 1.743  -2.566 O1G A1LWE 31 
A1LWE O2G O13 O 0 1 N N N N N N 30.474 81.276 -8.245  -7.990 0.686  -0.409 O2G A1LWE 32 
A1LWE O25 O14 O 0 1 N N N N N N 28.095 81.821 -7.608  -7.107 3.047  -0.286 O25 A1LWE 33 
A1LWE H1  H1  H 0 1 N N N N N N 29.718 68.284 -7.165  8.016  3.177  -0.443 H1  A1LWE 34 
A1LWE H2  H2  H 0 1 N N N N N N 28.961 68.180 -10.514 8.493  2.076  -2.450 H2  A1LWE 35 
A1LWE H3  H3  H 0 1 N N N N N N 28.893 67.385 -8.977  7.474  0.867  -3.019 H3  A1LWE 36 
A1LWE H4  H4  H 0 1 N N N N N N 32.036 74.134 -8.375  2.570  0.744  2.050  H4  A1LWE 37 
A1LWE H5  H5  H 0 1 N N N N N N 31.245 72.183 -11.521 3.220  -0.448 -1.496 H5  A1LWE 38 
A1LWE H6  H6  H 0 1 N N N N N N 28.877 72.926 -10.242 4.172  -1.929 0.962  H6  A1LWE 39 
A1LWE H7  H7  H 0 1 N N N N N N 28.474 71.784 -13.687 6.358  -3.559 -1.272 H7  A1LWE 40 
A1LWE H8  H8  H 0 1 N N N N N N 29.879 71.387 -12.641 6.243  -2.708 0.287  H8  A1LWE 41 
A1LWE H9  H9  H 0 1 N N N N N N 28.215 71.341 -11.965 5.241  -4.147 -0.017 H9  A1LWE 42 
A1LWE H10 H10 H 0 1 N N N N N N 29.621 75.061 -9.636  2.325  -3.315 1.003  H10 A1LWE 43 
A1LWE H11 H11 H 0 1 N N N N N N 27.727 75.534 -10.908 1.868  -4.570 -0.977 H11 A1LWE 44 
A1LWE H12 H12 H 0 1 N N N N N N 30.907 75.292 -12.384 1.099  -2.036 -1.451 H12 A1LWE 45 
A1LWE H13 H13 H 0 1 N N N N N N 32.565 76.666 -11.304 -0.216 -3.384 0.224  H13 A1LWE 46 
A1LWE H14 H14 H 0 1 N N N N N N 30.948 77.340 -10.910 0.234  -2.205 1.479  H14 A1LWE 47 
A1LWE H15 H15 H 0 1 N N N N N N 32.733 77.825 -6.652  -3.244 -3.188 -0.688 H15 A1LWE 48 
A1LWE H16 H16 H 0 1 N N N N N N 27.566 77.802 -10.067 -3.891 2.051  1.410  H16 A1LWE 49 
A1LWE H17 H17 H 0 1 N N N N N N 30.517 81.033 -5.645  -8.085 2.096  -2.803 H17 A1LWE 50 
A1LWE H18 H18 H 0 1 N N N N N N 28.298 82.404 -8.330  -6.472 3.699  -0.612 H18 A1LWE 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LWE C46 O42 SING N N 1  
A1LWE O42 C42 SING N N 2  
A1LWE C44 O44 SING N N 3  
A1LWE C44 C45 SING N N 4  
A1LWE C44 C43 SING N N 5  
A1LWE O43 C43 SING N N 6  
A1LWE C42 C41 SING N N 7  
A1LWE C42 C43 SING N N 8  
A1LWE O44 C41 SING N N 9  
A1LWE C41 N39 SING N N 10 
A1LWE C45 O45 SING N N 11 
A1LWE O3B PB  DOUB N N 12 
A1LWE N33 C32 DOUB N N 13 
A1LWE N33 C34 SING N N 14 
A1LWE N32 C32 SING N N 15 
A1LWE N39 C34 SING Y N 16 
A1LWE N39 C38 SING Y N 17 
A1LWE O45 PA  SING N N 18 
A1LWE O2B PB  SING N N 19 
A1LWE O2A PA  DOUB N N 20 
A1LWE C32 N31 SING N N 21 
A1LWE C34 C35 DOUB Y N 22 
A1LWE PB  O1B SING N N 23 
A1LWE PB  O3A SING N N 24 
A1LWE PA  O1B SING N N 25 
A1LWE PA  O1A SING N N 26 
A1LWE C38 N37 DOUB Y N 27 
A1LWE O2G PG  DOUB N N 28 
A1LWE N31 C36 SING N N 29 
A1LWE O25 PG  SING N N 30 
A1LWE O3A PG  SING N N 31 
A1LWE C35 N37 SING Y N 32 
A1LWE C35 C36 SING N N 33 
A1LWE PG  O1G SING N N 34 
A1LWE C36 O36 DOUB N N 35 
A1LWE N31 H1  SING N N 36 
A1LWE N32 H2  SING N N 37 
A1LWE N32 H3  SING N N 38 
A1LWE C38 H4  SING N N 39 
A1LWE C41 H5  SING N N 40 
A1LWE C42 H6  SING N N 41 
A1LWE C46 H7  SING N N 42 
A1LWE C46 H8  SING N N 43 
A1LWE C46 H9  SING N N 44 
A1LWE C43 H10 SING N N 45 
A1LWE O43 H11 SING N N 46 
A1LWE C44 H12 SING N N 47 
A1LWE C45 H13 SING N N 48 
A1LWE C45 H14 SING N N 49 
A1LWE O1A H15 SING N N 50 
A1LWE O2B H16 SING N N 51 
A1LWE O1G H17 SING N N 52 
A1LWE O25 H18 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LWE InChI            InChI                1.06  "InChI=1S/C11H18N5O14P3/c1-26-7-6(17)4(2-27-32(22,23)30-33(24,25)29-31(19,20)21)28-10(7)16-3-13-5-8(16)14-11(12)15-9(5)18/h3-4,6-7,10,17H,2H2,1H3,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,14,15,18)/t4-,6-,7-,10-/m1/s1" 
A1LWE InChIKey         InChI                1.06  GMUJBFZJAFFHIW-KQYNXXCUSA-N                                                                                                                                                                                            
A1LWE SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N"                                                                                                                             
A1LWE SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N"                                                                                                                                   
A1LWE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                     
A1LWE SMILES           "OpenEye OEToolkits" 2.0.7 "COC1C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           A1LWE 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LWE "Create component" 2024-01-15 PDBJ 
A1LWE "Initial release"  2024-11-27 RCSB 
# 
