data_A1LXS
# 
_chem_comp.id                                    A1LXS 
_chem_comp.name                                  "[(2~{R},3~{R},4~{S},5~{R})-4-fluoranyl-5-(5-iodanyl-4-methyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H14 F I N3 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-05 
_chem_comp.pdbx_modified_date                    2024-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.133 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LXS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XPP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LXS C5    C1  C 0 1 Y N N N N N 10.687 8.037  19.727 -2.845 0.862  -0.522 C5    A1LXS 1  
A1LXS "C1'" C2  C 0 1 N N R N N N 9.586  11.474 19.756 0.669  1.857  -0.311 "C1'" A1LXS 2  
A1LXS "C4'" C3  C 0 1 N N R N N N 7.519  12.671 19.591 2.905  1.519  0.087  "C4'" A1LXS 3  
A1LXS "C5'" C4  C 0 1 N N N N N N 6.018  12.309 19.654 3.941  0.482  0.525  "C5'" A1LXS 4  
A1LXS C06   C5  C 0 1 N N N N N N 11.663 5.633  19.726 -5.284 0.245  -0.690 C06   A1LXS 5  
A1LXS C6    C6  C 0 1 Y N N N N N 11.817 7.157  19.732 -4.151 1.228  -0.839 C6    A1LXS 6  
A1LXS C2    C7  C 0 1 Y N N N N N 13.181 8.980  19.782 -3.387 3.325  -1.408 C2    A1LXS 7  
A1LXS C4    C8  C 0 1 Y N N N N N 10.900 9.395  19.749 -1.816 1.817  -0.678 C4    A1LXS 8  
A1LXS C8    C9  C 0 1 Y N N N N N 8.748  9.191  19.722 -0.888 -0.080 0.080  C8    A1LXS 9  
A1LXS C7    C10 C 0 1 Y N N N N N 9.290  7.892  19.714 -2.197 -0.355 -0.033 C7    A1LXS 10 
A1LXS "C3'" C11 C 0 1 N N R N N N 8.088  12.120 18.221 2.430  2.350  1.299  "C3'" A1LXS 11 
A1LXS "C2'" C12 C 0 1 N N S N N N 9.546  12.058 18.545 0.925  2.578  1.032  "C2'" A1LXS 12 
A1LXS "F2'" F1  F 0 1 N N N N N N 10.200 11.282 17.558 0.154  2.006  2.050  "F2'" A1LXS 13 
A1LXS I7    I1  I 0 1 N N N N N N 8.207  6.117  19.666 -3.135 -2.174 0.415  I7    A1LXS 14 
A1LXS N1    N1  N 0 1 Y N N N N N 13.020 7.662  19.755 -4.374 2.457  -1.275 N1    A1LXS 15 
A1LXS N3    N2  N 0 1 Y N N N N N 12.145 9.809  19.774 -2.138 3.028  -1.122 N3    A1LXS 16 
A1LXS N9    N3  N 0 1 Y N N N N N 9.720  10.059 19.729 -0.647 1.214  -0.304 N9    A1LXS 17 
A1LXS "O4'" O1  O 0 1 N N N N N N 8.204  12.021 20.465 1.714  0.864  -0.401 "O4'" A1LXS 18 
A1LXS "O5'" O2  O 0 1 N N N N N N 5.993  11.015 20.140 4.398  -0.246 -0.616 "O5'" A1LXS 19 
A1LXS O2P   O3  O 0 1 N N N N N N 3.422  10.660 19.393 5.673  -2.103 -1.972 O2P   A1LXS 20 
A1LXS O3P   O4  O 0 1 N N N N N N 5.022  8.688  19.270 6.904  -0.803 -0.047 O3P   A1LXS 21 
A1LXS "O3'" O5  O 0 1 N N N N N N 7.904  13.087 17.329 3.123  3.598  1.353  "O3'" A1LXS 22 
A1LXS P     P1  P 0 1 N N N N N N 4.610  10.003 19.979 5.496  -1.421 -0.525 P     A1LXS 23 
A1LXS H1    H1  H 0 1 N N N N N N 10.415 11.894 20.344 0.742  2.562  -1.139 H1    A1LXS 24 
A1LXS H2    H2  H 0 1 N N N N N N 7.647  13.763 19.633 3.322  2.170  -0.682 H2    A1LXS 25 
A1LXS H3    H3  H 0 1 N N N N N N 5.482  12.989 20.332 4.784  0.987  0.995  H3    A1LXS 26 
A1LXS H4    H4  H 0 1 N N N N N N 5.564  12.357 18.653 3.487  -0.207 1.237  H4    A1LXS 27 
A1LXS H5    H5  H 0 1 N N N N N N 12.658 5.163  19.743 -5.704 0.325  0.313  H5    A1LXS 28 
A1LXS H6    H6  H 0 1 N N N N N N 11.094 5.319  20.613 -6.057 0.468  -1.426 H6    A1LXS 29 
A1LXS H7    H7  H 0 1 N N N N N N 11.127 5.322  18.817 -4.911 -0.766 -0.849 H7    A1LXS 30 
A1LXS H8    H8  H 0 1 N N N N N N 14.181 9.387  19.811 -3.615 4.318  -1.767 H8    A1LXS 31 
A1LXS H9    H9  H 0 1 N N N N N N 7.695  9.430  19.722 -0.135 -0.775 0.421  H9    A1LXS 32 
A1LXS H10   H10 H 0 1 N N N N N N 7.661  11.139 17.968 2.573  1.792  2.224  H10   A1LXS 33 
A1LXS H11   H11 H 0 1 N N N N N N 9.959  13.077 18.571 0.710  3.642  0.941  H11   A1LXS 34 
A1LXS H12   H12 H 0 1 N N N N N N 2.822  10.908 20.087 6.321  -2.821 -1.992 H12   A1LXS 35 
A1LXS H13   H13 H 0 1 N N N N N N 5.096  7.991  19.912 7.258  -0.127 -0.641 H13   A1LXS 36 
A1LXS H14   H14 H 0 1 N N N N N N 6.982  13.144 17.109 2.822  4.185  2.060  H14   A1LXS 37 
A1LXS O1P   O1A O 0 1 N N N N N N 4.397  9.982  21.515 5.048  -2.440 0.450  O1P   A1LXS 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LXS "O3'" "C3'" SING N N 1  
A1LXS "F2'" "C2'" SING N N 2  
A1LXS "C3'" "C2'" SING N N 3  
A1LXS "C3'" "C4'" SING N N 4  
A1LXS "C2'" "C1'" SING N N 5  
A1LXS O3P   P     SING N N 6  
A1LXS O2P   P     SING N N 7  
A1LXS "C4'" "C5'" SING N N 8  
A1LXS "C4'" "O4'" SING N N 9  
A1LXS "C5'" "O5'" SING N N 10 
A1LXS I7    C7    SING N N 11 
A1LXS C7    C8    DOUB Y N 12 
A1LXS C7    C5    SING Y N 13 
A1LXS C8    N9    SING Y N 14 
A1LXS C06   C6    SING N N 15 
A1LXS C5    C6    DOUB Y N 16 
A1LXS C5    C4    SING Y N 17 
A1LXS N9    C4    SING Y N 18 
A1LXS N9    "C1'" SING N N 19 
A1LXS C6    N1    SING Y N 20 
A1LXS C4    N3    DOUB Y N 21 
A1LXS N1    C2    DOUB Y N 22 
A1LXS "C1'" "O4'" SING N N 23 
A1LXS N3    C2    SING Y N 24 
A1LXS P     "O5'" SING N N 25 
A1LXS "C1'" H1    SING N N 26 
A1LXS "C4'" H2    SING N N 27 
A1LXS "C5'" H3    SING N N 28 
A1LXS "C5'" H4    SING N N 29 
A1LXS C06   H5    SING N N 30 
A1LXS C06   H6    SING N N 31 
A1LXS C06   H7    SING N N 32 
A1LXS C2    H8    SING N N 33 
A1LXS C8    H9    SING N N 34 
A1LXS "C3'" H10   SING N N 35 
A1LXS "C2'" H11   SING N N 36 
A1LXS O2P   H12   SING N N 37 
A1LXS O3P   H13   SING N N 38 
A1LXS "O3'" H14   SING N N 39 
A1LXS P     O1P   DOUB N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LXS InChI            InChI                1.06  "InChI=1S/C12H14FIN3O6P/c1-5-8-6(14)2-17(11(8)16-4-15-5)12-9(13)10(18)7(23-12)3-22-24(19,20)21/h2,4,7,9-10,12,18H,3H2,1H3,(H2,19,20,21)/t7-,9+,10-,12-/m1/s1" 
A1LXS InChIKey         InChI                1.06  GLTADVOSHVFARN-DLYFRVTGSA-N                                                                                                                                   
A1LXS SMILES_CANONICAL CACTVS               3.385 "Cc1ncnc2n(cc(I)c12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F"                                                                                            
A1LXS SMILES           CACTVS               3.385 "Cc1ncnc2n(cc(I)c12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F"                                                                                                   
A1LXS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2c(cn(c2ncn1)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F)I"                                                                                              
A1LXS SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c2c(cn(c2ncn1)C3C(C(C(O3)COP(=O)(O)O)O)F)I"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           A1LXS 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{S},5~{R})-4-fluoranyl-5-(5-iodanyl-4-methyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LXS "Create component" 2024-02-05 PDBJ 
A1LXS "Modify name"      2024-02-26 PDBJ 
A1LXS "Modify name"      2024-02-27 PDBJ 
A1LXS "Initial release"  2024-12-04 RCSB 
# 
