data_A1LXU
# 
_chem_comp.id                                    A1LXU 
_chem_comp.name                                  "5-(2-oxidanylidenepropyl)-8-[(2~{S},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)pentyl]-1,7-dihydropteridine-2,4,6-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H20 N4 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-05 
_chem_comp.pdbx_modified_date                    2024-10-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.331 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LXU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Y6X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LXU C01  C1  C 0 1 N N N N N N -65.774 -19.222 -13.095 -0.774 0.946  0.624  C01  A1LXU 1  
A1LXU C02  C2  C 0 1 N N N N N N -66.490 -19.133 -11.911 -1.861 0.449  -0.064 C02  A1LXU 2  
A1LXU C03  C3  C 0 1 N N N N N N -66.253 -20.164 -10.911 -2.708 1.345  -0.737 C03  A1LXU 3  
A1LXU C05  C4  C 0 1 N N N N N N -64.662 -21.227 -12.349 -1.369 3.131  -0.024 C05  A1LXU 4  
A1LXU C08  C5  C 0 1 N N N N N N -64.938 -18.301 -15.379 1.472  0.371  1.479  C08  A1LXU 5  
A1LXU C09  C6  C 0 1 N N S N N N -64.902 -19.535 -16.328 2.269  -0.192 0.301  C09  A1LXU 6  
A1LXU C10  C7  C 0 1 N N S N N N -64.199 -19.177 -17.657 3.755  0.121  0.494  C10  A1LXU 7  
A1LXU C13  C8  C 0 1 N N R N N N -64.460 -20.139 -18.845 4.552  -0.443 -0.684 C13  A1LXU 8  
A1LXU C14  C9  C 0 1 N N N N N N -63.365 -19.870 -19.899 6.037  -0.130 -0.491 C14  A1LXU 9  
A1LXU C18  C10 C 0 1 N N N N N N -67.647 -17.118 -12.843 -1.469 -1.750 0.789  C18  A1LXU 10 
A1LXU C19  C11 C 0 1 N N N N N N -67.001 -17.396 -14.192 -0.533 -1.171 1.821  C19  A1LXU 11 
A1LXU C21  C12 C 0 1 N N N N N N -68.066 -17.558 -10.462 -3.050 -1.501 -1.051 C21  A1LXU 12 
A1LXU C22  C13 C 0 1 N N N N N N -69.539 -17.736 -10.238 -4.431 -1.521 -0.449 C22  A1LXU 13 
A1LXU C24  C14 C 0 1 N N N N N N -70.392 -16.617 -10.748 -5.592 -2.057 -1.247 C24  A1LXU 14 
A1LXU N04  N1  N 0 1 N N N N N N -65.345 -21.164 -11.182 -2.436 2.666  -0.697 N04  A1LXU 15 
A1LXU N06  N2  N 0 1 N N N N N N -64.892 -20.254 -13.269 -0.539 2.298  0.633  N06  A1LXU 16 
A1LXU N07  N3  N 0 1 N N N N N N -65.851 -18.358 -14.195 0.050  0.072  1.294  N07  A1LXU 17 
A1LXU N17  N4  N 0 1 N N N N N N -67.422 -17.965 -11.758 -2.104 -0.938 -0.083 N17  A1LXU 18 
A1LXU O11  O1  O 0 1 N N N N N N -64.129 -20.638 -15.836 2.086  -1.608 0.235  O11  A1LXU 19 
A1LXU O12  O2  O 0 1 N N N N N N -64.457 -17.855 -18.113 3.939  1.536  0.560  O12  A1LXU 20 
A1LXU O15  O3  O 0 1 N N N N N N -64.493 -21.528 -18.477 4.368  -1.859 -0.750 O15  A1LXU 21 
A1LXU O16  O4  O 0 1 N N N N N N -62.056 -20.095 -19.370 6.766  -0.553 -1.645 O16  A1LXU 22 
A1LXU O20  O5  O 0 1 N N N N N N -68.371 -16.137 -12.763 -1.650 -2.948 0.742  O20  A1LXU 23 
A1LXU O25  O6  O 0 1 N N N N N N -63.859 -22.119 -12.579 -1.148 4.327  -0.009 O25  A1LXU 24 
A1LXU O26  O7  O 0 1 N N N N N N -66.765 -20.288 -9.800  -3.679 0.934  -1.351 O26  A1LXU 25 
A1LXU O1   O8  O 0 1 N Y N N N N -69.882 -18.409 -9.259  -4.608 -1.108 0.671  O1   A1LXU 26 
A1LXU H082 H1  H 0 0 N N N N N N -63.917 -18.149 -14.999 1.822  -0.084 2.405  H082 A1LXU 27 
A1LXU H081 H2  H 0 0 N N N N N N -65.237 -17.432 -15.983 1.613  1.451  1.529  H081 A1LXU 28 
A1LXU H091 H3  H 0 0 N N N N N N -65.934 -19.850 -16.541 1.919  0.263  -0.626 H091 A1LXU 29 
A1LXU H101 H4  H 0 0 N N N N N N -63.120 -19.244 -17.451 4.104  -0.335 1.420  H101 A1LXU 30 
A1LXU H131 H5  H 0 0 N N N N N N -65.427 -19.863 -19.290 4.202  0.012  -1.611 H131 A1LXU 31 
A1LXU H141 H6  H 0 0 N N N N N N -63.440 -18.824 -20.232 6.167  0.943  -0.352 H141 A1LXU 32 
A1LXU H142 H7  H 0 0 N N N N N N -63.523 -20.540 -20.757 6.408  -0.658 0.387  H142 A1LXU 33 
A1LXU H192 H8  H 0 0 N N N N N N -66.637 -16.438 -14.593 -1.087 -0.955 2.734  H192 A1LXU 34 
A1LXU H191 H9  H 0 0 N N N N N N -67.777 -17.801 -14.858 0.261  -1.886 2.035  H191 A1LXU 35 
A1LXU H212 H10 H 0 0 N N N N N N -67.559 -18.127 -9.669  -2.748 -2.518 -1.303 H212 A1LXU 36 
A1LXU H211 H11 H 0 0 N N N N N N -67.858 -16.485 -10.334 -3.055 -0.889 -1.952 H211 A1LXU 37 
A1LXU H241 H13 H 0 0 N N N N N N -71.296 -16.532 -10.127 -5.241 -2.381 -2.227 H241 A1LXU 38 
A1LXU H242 H14 H 0 0 N N N N N N -69.826 -15.675 -10.702 -6.035 -2.903 -0.721 H242 A1LXU 39 
A1LXU H243 H15 H 0 0 N N N N N N -70.680 -16.821 -11.790 -6.341 -1.274 -1.370 H243 A1LXU 40 
A1LXU H041 H16 H 0 0 N N N N N N -65.185 -21.869 -10.491 -3.018 3.289  -1.159 H041 A1LXU 41 
A1LXU H061 H17 H 0 0 N N N N N N -64.384 -20.295 -14.129 0.226  2.654  1.112  H061 A1LXU 42 
A1LXU H111 H18 H 0 0 N N N N N N -64.489 -20.934 -15.008 2.376  -2.079 1.028  H111 A1LXU 43 
A1LXU H121 H19 H 0 0 N N N N N N -64.305 -17.240 -17.405 3.648  2.008  -0.233 H121 A1LXU 44 
A1LXU H151 H20 H 0 0 N N N N N N -65.173 -21.668 -17.829 4.658  -2.330 0.043  H151 A1LXU 45 
A1LXU H161 H21 H 0 0 N N N N N N -61.408 -19.921 -20.042 7.717  -0.385 -1.592 H161 A1LXU 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LXU C14 O16  SING N N 1  
A1LXU C14 C13  SING N N 2  
A1LXU C13 O15  SING N N 3  
A1LXU C13 C10  SING N N 4  
A1LXU O12 C10  SING N N 5  
A1LXU C10 C09  SING N N 6  
A1LXU C09 O11  SING N N 7  
A1LXU C09 C08  SING N N 8  
A1LXU C08 N07  SING N N 9  
A1LXU N07 C19  SING N N 10 
A1LXU N07 C01  SING N N 11 
A1LXU C19 C18  SING N N 12 
A1LXU N06 C01  SING N N 13 
A1LXU N06 C05  SING N N 14 
A1LXU C01 C02  DOUB N N 15 
A1LXU C18 O20  DOUB N N 16 
A1LXU C18 N17  SING N N 17 
A1LXU O25 C05  DOUB N N 18 
A1LXU C05 N04  SING N N 19 
A1LXU C02 N17  SING N N 20 
A1LXU C02 C03  SING N N 21 
A1LXU N17 C21  SING N N 22 
A1LXU N04 C03  SING N N 23 
A1LXU C03 O26  DOUB N N 24 
A1LXU C24 C22  SING N N 25 
A1LXU C21 C22  SING N N 26 
A1LXU C22 O1   DOUB N N 27 
A1LXU C08 H082 SING N N 28 
A1LXU C08 H081 SING N N 29 
A1LXU C09 H091 SING N N 30 
A1LXU C10 H101 SING N N 31 
A1LXU C13 H131 SING N N 32 
A1LXU C14 H141 SING N N 33 
A1LXU C14 H142 SING N N 34 
A1LXU C19 H192 SING N N 35 
A1LXU C19 H191 SING N N 36 
A1LXU C21 H212 SING N N 37 
A1LXU C21 H211 SING N N 38 
A1LXU C24 H241 SING N N 39 
A1LXU C24 H242 SING N N 40 
A1LXU C24 H243 SING N N 41 
A1LXU N04 H041 SING N N 42 
A1LXU N06 H061 SING N N 43 
A1LXU O11 H111 SING N N 44 
A1LXU O12 H121 SING N N 45 
A1LXU O15 H151 SING N N 46 
A1LXU O16 H161 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LXU InChI            InChI                1.06  "InChI=1S/C14H20N4O8/c1-6(20)2-18-9(23)4-17(3-7(21)11(24)8(22)5-19)12-10(18)13(25)16-14(26)15-12/h7-8,11,19,21-22,24H,2-5H2,1H3,(H2,15,16,25,26)/t7-,8+,11-/m0/s1" 
A1LXU InChIKey         InChI                1.06  HUQODSLWOXPUOK-RNSXUZJQSA-N                                                                                                                                        
A1LXU SMILES_CANONICAL CACTVS               3.385 "CC(=O)CN1C(=O)CN(C[C@H](O)[C@H](O)[C@H](O)CO)C2=C1C(=O)NC(=O)N2"                                                                                                  
A1LXU SMILES           CACTVS               3.385 "CC(=O)CN1C(=O)CN(C[CH](O)[CH](O)[CH](O)CO)C2=C1C(=O)NC(=O)N2"                                                                                                     
A1LXU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)CN1C(=O)CN(C2=C1C(=O)NC(=O)N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O"                                                                                               
A1LXU SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)CN1C(=O)CN(C2=C1C(=O)NC(=O)N2)CC(C(C(CO)O)O)O"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           A1LXU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-(2-oxidanylidenepropyl)-8-[(2~{S},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)pentyl]-1,7-dihydropteridine-2,4,6-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LXU "Create component"    2024-02-05 PDBJ 
A1LXU "Modify linking type" 2024-03-06 PDBJ 
A1LXU "Modify formula"      2024-03-06 PDBJ 
A1LXU "Modify PCM"          2024-09-27 PDBE 
A1LXU "Initial release"     2024-10-30 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1LXU 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
