data_T6K
# 
_chem_comp.id                                    T6K 
_chem_comp.name                                  "(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl {(2R,3S,5R)-3-hydroxy-5-[(5R)-5-methyl-2,4-dioxotetrahydropyrimidin-1(2H)-yl]tetrahydrofuran-2-yl}methyl dihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H26 N2 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-03-18 
_chem_comp.pdbx_modified_date                    2015-03-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        548.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T6K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4YTJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T6K C01 C1  C 0 1 N N N 10.830 15.434 89.063 -6.680 -2.349 0.203  C01 T6K 1  
T6K C02 C2  C 0 1 N N R 9.765  16.006 90.029 -5.831 -2.055 -1.015 C02 T6K 2  
T6K C03 C3  C 0 1 N N N 9.447  14.950 91.038 -6.575 -1.091 -1.942 C03 T6K 3  
T6K O04 O1  O 0 1 N N N 10.184 17.299 90.692 -4.607 -1.454 -0.578 O04 T6K 4  
T6K C05 C4  C 0 1 N N R 10.661 18.231 89.700 -4.786 -0.285 0.222  C05 T6K 5  
T6K O06 O2  O 0 1 N N N 9.755  18.215 88.644 -3.511 0.294  0.509  O06 T6K 6  
T6K P07 P1  P 0 1 N N N 8.596  19.368 88.569 -2.819 1.401  -0.433 P07 T6K 7  
T6K O08 O3  O 0 1 N N N 8.525  19.887 87.153 -2.723 0.881  -1.816 O08 T6K 8  
T6K O09 O4  O 0 1 N N N 7.279  18.762 88.982 -3.706 2.744  -0.425 O09 T6K 9  
T6K O10 O5  O 0 1 N N N 8.974  20.596 89.605 -1.343 1.729  0.120  O10 T6K 10 
T6K P11 P2  P 0 1 N N N 9.730  21.989 89.144 -0.057 2.474  -0.499 P11 T6K 11 
T6K O12 O6  O 0 1 N N N 10.858 21.666 88.197 0.096  2.096  -1.922 O12 T6K 12 
T6K O13 O7  O 0 1 N N N 8.738  22.923 88.482 -0.254 4.068  -0.386 O13 T6K 13 
T6K O14 O8  O 0 1 N N N 10.337 22.690 90.516 1.260  2.037  0.317  O14 T6K 14 
T6K C15 C5  C 0 1 N N N 9.675  22.420 91.733 2.578  2.447  -0.055 C15 T6K 15 
T6K C16 C6  C 0 1 N N R 9.928  23.440 92.628 3.592  1.858  0.927  C16 T6K 16 
T6K O17 O9  O 0 1 N N N 11.474 23.499 92.976 3.638  0.420  0.809  O17 T6K 17 
T6K C18 C7  C 0 1 N N R 11.903 24.671 92.622 4.902  -0.005 1.345  C18 T6K 18 
T6K C19 C8  C 0 1 N N N 10.707 25.437 91.766 5.887  1.169  1.182  C19 T6K 19 
T6K C20 C9  C 0 1 N N S 9.565  24.822 92.029 5.031  2.297  0.556  C20 T6K 20 
T6K O21 O10 O 0 1 N N N 8.783  25.608 93.014 5.346  3.562  1.142  O21 T6K 21 
T6K N22 N1  N 0 1 N N N 13.090 24.507 91.836 5.389  -1.173 0.606  N22 T6K 22 
T6K C23 C10 C 0 1 N N N 13.241 23.312 91.045 5.754  -2.388 1.336  C23 T6K 23 
T6K C24 C11 C 0 1 N N R 14.505 23.076 90.208 5.364  -3.617 0.511  C24 T6K 24 
T6K C25 C12 C 0 1 N N N 14.037 22.674 88.722 3.844  -3.791 0.540  C25 T6K 25 
T6K C26 C13 C 0 1 N N N 15.619 24.163 90.189 5.823  -3.424 -0.913 C26 T6K 26 
T6K O27 O11 O 0 1 N N N 16.621 24.055 89.561 6.198  -4.376 -1.563 O27 T6K 27 
T6K N28 N2  N 0 1 N N N 15.333 25.327 91.041 5.816  -2.196 -1.461 N28 T6K 28 
T6K C29 C14 C 0 1 N N N 14.119 25.564 91.872 5.488  -1.115 -0.732 C29 T6K 29 
T6K O30 O12 O 0 1 N N N 13.984 26.541 92.521 5.272  -0.062 -1.298 O30 T6K 30 
T6K C31 C15 C 0 1 N N R 11.941 17.730 89.127 -5.482 -0.654 1.535  C31 T6K 31 
T6K O32 O13 O 0 1 N N N 12.455 18.726 88.225 -4.698 -1.621 2.236  O32 T6K 32 
T6K C33 C16 C 0 1 N N R 11.689 16.465 88.346 -6.864 -1.242 1.220  C33 T6K 33 
T6K O34 O14 O 0 1 N N N 12.973 15.853 87.894 -7.710 -0.225 0.679  O34 T6K 34 
T6K O35 O15 O 0 1 N N N 10.960 14.276 88.884 -7.197 -3.430 0.356  O35 T6K 35 
T6K H1  H1  H 0 1 N N N 8.856  16.205 89.441 -5.615 -2.982 -1.546 H1  T6K 36 
T6K H2  H2  H 0 1 N N N 8.690  15.329 91.740 -6.780 -0.162 -1.411 H2  T6K 37 
T6K H3  H3  H 0 1 N N N 9.057  14.059 90.525 -5.961 -0.882 -2.818 H3  T6K 38 
T6K H4  H4  H 0 1 N N N 10.360 14.685 91.591 -7.515 -1.544 -2.257 H4  T6K 39 
T6K H5  H5  H 0 1 N N N 10.791 19.238 90.123 -5.397 0.436  -0.321 H5  T6K 40 
T6K H6  H6  H 0 1 N N N 6.661  18.827 88.264 -3.812 3.141  0.450  H6  T6K 41 
T6K H7  H7  H 0 1 N N N 9.027  23.119 87.599 -0.361 4.388  0.521  H7  T6K 42 
T6K H8  H8  H 0 1 N N N 8.592  22.349 91.554 2.798  2.092  -1.062 H8  T6K 43 
T6K H9  H9  H 0 1 N N N 10.041 21.469 92.147 2.640  3.535  -0.033 H9  T6K 44 
T6K H10 H10 H 0 1 N N N 9.366  23.299 93.563 3.350  2.152  1.949  H10 T6K 45 
T6K H11 H11 H 0 1 N N N 12.124 25.303 93.495 4.793  -0.254 2.400  H11 T6K 46 
T6K H12 H12 H 0 1 N N N 10.923 25.381 90.689 6.275  1.479  2.152  H12 T6K 47 
T6K H13 H13 H 0 1 N N N 10.644 26.491 92.073 6.703  0.893  0.514  H13 T6K 48 
T6K H14 H14 H 0 1 N N N 8.963  24.665 91.122 5.161  2.329  -0.526 H14 T6K 49 
T6K H15 H15 H 0 1 N N N 7.965  25.161 93.198 6.264  3.837  1.013  H15 T6K 50 
T6K H16 H16 H 0 1 N N N 12.393 23.291 90.345 6.830  -2.396 1.513  H16 T6K 51 
T6K H17 H17 H 0 1 N N N 13.163 22.464 91.741 5.229  -2.410 2.290  H17 T6K 52 
T6K H18 H18 H 0 1 N N N 14.977 22.171 90.618 5.840  -4.503 0.930  H18 T6K 53 
T6K H19 H19 H 0 1 N N N 13.252 21.906 88.780 3.369  -2.905 0.119  H19 T6K 54 
T6K H20 H20 H 0 1 N N N 13.643 23.563 88.209 3.567  -4.666 -0.047 H20 T6K 55 
T6K H21 H21 H 0 1 N N N 14.897 22.278 88.162 3.514  -3.925 1.570  H21 T6K 56 
T6K H22 H22 H 0 1 N N N 16.033 26.041 91.065 6.050  -2.088 -2.396 H22 T6K 57 
T6K H23 H23 H 0 1 N N N 12.660 17.530 89.935 -5.597 0.238  2.151  H23 T6K 58 
T6K H24 H24 H 0 1 N N N 12.620 19.531 88.702 -5.080 -1.902 3.079  H24 T6K 59 
T6K H25 H25 H 0 1 N N N 11.138 16.757 87.440 -7.308 -1.647 2.129  H25 T6K 60 
T6K H26 H26 H 0 1 N N N 12.935 14.911 88.014 -8.593 -0.536 0.437  H26 T6K 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T6K O08 P07 DOUB N N 1  
T6K O34 C33 SING N N 2  
T6K O12 P11 DOUB N N 3  
T6K O32 C31 SING N N 4  
T6K C33 C01 SING N N 5  
T6K C33 C31 SING N N 6  
T6K O13 P11 SING N N 7  
T6K P07 O06 SING N N 8  
T6K P07 O09 SING N N 9  
T6K P07 O10 SING N N 10 
T6K O06 C05 SING N N 11 
T6K C25 C24 SING N N 12 
T6K O35 C01 DOUB N N 13 
T6K C01 C02 SING N N 14 
T6K C31 C05 SING N N 15 
T6K P11 O10 SING N N 16 
T6K P11 O14 SING N N 17 
T6K O27 C26 DOUB N N 18 
T6K C05 O04 SING N N 19 
T6K C02 O04 SING N N 20 
T6K C02 C03 SING N N 21 
T6K C26 C24 SING N N 22 
T6K C26 N28 SING N N 23 
T6K C24 C23 SING N N 24 
T6K O14 C15 SING N N 25 
T6K N28 C29 SING N N 26 
T6K C23 N22 SING N N 27 
T6K C15 C16 SING N N 28 
T6K C19 C20 SING N N 29 
T6K C19 C18 SING N N 30 
T6K N22 C29 SING N N 31 
T6K N22 C18 SING N N 32 
T6K C29 O30 DOUB N N 33 
T6K C20 C16 SING N N 34 
T6K C20 O21 SING N N 35 
T6K C18 O17 SING N N 36 
T6K C16 O17 SING N N 37 
T6K C02 H1  SING N N 38 
T6K C03 H2  SING N N 39 
T6K C03 H3  SING N N 40 
T6K C03 H4  SING N N 41 
T6K C05 H5  SING N N 42 
T6K O09 H6  SING N N 43 
T6K O13 H7  SING N N 44 
T6K C15 H8  SING N N 45 
T6K C15 H9  SING N N 46 
T6K C16 H10 SING N N 47 
T6K C18 H11 SING N N 48 
T6K C19 H12 SING N N 49 
T6K C19 H13 SING N N 50 
T6K C20 H14 SING N N 51 
T6K O21 H15 SING N N 52 
T6K C23 H16 SING N N 53 
T6K C23 H17 SING N N 54 
T6K C24 H18 SING N N 55 
T6K C25 H19 SING N N 56 
T6K C25 H20 SING N N 57 
T6K C25 H21 SING N N 58 
T6K N28 H22 SING N N 59 
T6K C31 H23 SING N N 60 
T6K O32 H24 SING N N 61 
T6K C33 H25 SING N N 62 
T6K O34 H26 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T6K SMILES           ACDLabs              12.01 "C3(C(OC(OP(O)(OP(OCC1OC(CC1O)N2C(NC(C(C2)C)=O)=O)(=O)O)=O)C(O)C3O)C)=O" 
T6K InChI            InChI                1.03  
"InChI=1S/C16H26N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h6-10,12-13,15,19,21-22H,3-5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t6-,7-,8+,9-,10-,12+,13-,15-/m1/s1" 
T6K InChIKey         InChI                1.03  GOBYTWJNFOHSGZ-JXBWMLSMSA-N 
T6K SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]3O[C@H](C)C(=O)[C@H](O)[C@H]3O)O2)C(=O)NC1=O" 
T6K SMILES           CACTVS               3.385 "C[CH]1CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]3O[CH](C)C(=O)[CH](O)[CH]3O)O2)C(=O)NC1=O" 
T6K SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)O[C@@H]3[C@@H]([C@H](C(=O)[C@H](O3)C)O)O)O" 
T6K SMILES           "OpenEye OEToolkits" 1.9.2 "CC1CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(=O)C(O3)C)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T6K "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl {(2R,3S,5R)-3-hydroxy-5-[(5R)-5-methyl-2,4-dioxotetrahydropyrimidin-1(2H)-yl]tetrahydrofuran-2-yl}methyl dihydrogen diphosphate (non-preferred name)" 
T6K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"[[(2R,3S,5R)-5-[(5R)-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,6R)-6-methyl-3,4-bis(oxidanyl)-5-oxidanylidene-oxan-2-yl] hydrogen phosphate"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T6K "Create component" 2015-03-18 RCSB 
T6K "Initial release"  2015-04-01 RCSB 
# 
