data_X9E
# 
_chem_comp.id                                    X9E 
_chem_comp.name                                  "(4R,5S)-3-((2R,3S,4S,E)-2,6-diethyl-9-((2R,3R)-2-ethyl-3-methyloxiran-2-yl)-3-hydroxy-4-methylnon-6-enoyl)-4-methyl-5-phenyloxazolidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H43 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-25 
_chem_comp.pdbx_modified_date                    2024-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        485.655 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X9E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WVT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X9E C10 C1  C 0 1 N N R N N N -1.370 7.524  -3.319 -7.570 -0.885 0.615  C10 X9E 1  
X9E O14 O1  O 0 1 N N N N N N -1.764 7.787  -4.651 -6.273 -1.447 0.404  O14 X9E 2  
X9E C5  C2  C 0 1 N N N N N N 1.852  10.248 -5.471 -2.335 1.266  1.157  C5  X9E 3  
X9E C03 C3  C 0 1 N N N N N N 1.681  10.762 -4.085 -2.863 2.382  0.293  C03 X9E 4  
X9E C04 C4  C 0 1 N N N N N N 0.517  10.628 -3.435 -3.830 2.149  -0.560 C04 X9E 5  
X9E C05 C5  C 0 1 N N N N N N 2.904  11.532 -3.555 -2.279 3.766  0.408  C05 X9E 6  
X9E C06 C6  C 0 1 N N N N N N 3.772  10.752 -2.569 -2.970 4.518  1.547  C06 X9E 7  
X9E C07 C7  C 0 1 N N N N N N -0.657 9.916  -4.028 -4.480 0.790  -0.608 C07 X9E 8  
X9E C08 C8  C 0 1 N N N N N N -1.938 9.850  -3.176 -5.989 0.939  -0.405 C08 X9E 9  
X9E C09 C9  C 0 1 N N R N N N -2.464 8.436  -3.364 -6.658 -0.431 -0.527 C09 X9E 10 
X9E C11 C10 C 0 1 N N N N N N -3.920 8.069  -3.466 -7.023 -0.868 -1.947 C11 X9E 11 
X9E C12 C11 C 0 1 N N N N N N -4.854 9.246  -3.261 -5.842 -1.614 -2.571 C12 X9E 12 
X9E C13 C12 C 0 1 N N N N N N -1.550 6.085  -3.018 -8.785 -1.743 0.259  C13 X9E 13 
X9E H1  H1  H 0 1 N N N N N N -0.403 7.946  -3.006 -7.699 -0.209 1.460  H1  X9E 14 
X9E H2  H2  H 0 1 N N N N N N 1.083  10.553 -6.196 -2.025 1.669  2.121  H2  X9E 15 
X9E H3  H3  H 0 1 N N N N N N 2.849  10.383 -5.915 -3.118 0.523  1.309  H3  X9E 16 
X9E H5  H5  H 0 1 N N N N N N 0.423  11.050 -2.445 -4.162 2.930  -1.227 H5  X9E 17 
X9E H6  H6  H 0 1 N N N N N N 3.530  11.814 -4.414 -1.211 3.694  0.617  H6  X9E 18 
X9E H7  H7  H 0 1 N N N N N N 2.544  12.441 -3.050 -2.430 4.304  -0.527 H7  X9E 19 
X9E H8  H8  H 0 1 N N N N N N 4.616  11.379 -2.247 -2.548 5.520  1.631  H8  X9E 20 
X9E H9  H9  H 0 1 N N N N N N 3.169  10.471 -1.693 -4.038 4.591  1.339  H9  X9E 21 
X9E H10 H10 H 0 1 N N N N N N 4.155  9.844  -3.057 -2.819 3.980  2.483  H10 X9E 22 
X9E H11 H11 H 0 1 N N N N N N -0.911 10.423 -4.971 -4.288 0.330  -1.578 H11 X9E 23 
X9E H12 H12 H 0 1 N N N N N N -0.346 8.882  -4.240 -4.068 0.162  0.181  H12 X9E 24 
X9E H13 H13 H 0 1 N N N N N N -1.708 10.039 -2.117 -6.183 1.351  0.586  H13 X9E 25 
X9E H14 H14 H 0 1 N N N N N N -2.675 10.587 -3.528 -6.394 1.610  -1.163 H14 X9E 26 
X9E H15 H15 H 0 1 N N N N N N -4.104 7.648  -4.465 -7.892 -1.526 -1.913 H15 X9E 27 
X9E H16 H16 H 0 1 N N N N N N -4.143 7.310  -2.701 -7.257 0.010  -2.549 H16 X9E 28 
X9E H17 H17 H 0 1 N N N N N N -5.897 8.907  -3.349 -4.957 -0.979 -2.545 H17 X9E 29 
X9E H18 H18 H 0 1 N N N N N N -4.691 9.674  -2.261 -5.651 -2.528 -2.008 H18 X9E 30 
X9E H19 H19 H 0 1 N N N N N N -4.652 10.011 -4.025 -6.077 -1.867 -3.605 H19 X9E 31 
X9E H20 H20 H 0 1 N N N N N N -1.242 5.885  -1.981 -9.322 -2.008 1.170  H20 X9E 32 
X9E H21 H21 H 0 1 N N N N N N -2.608 5.814  -3.145 -9.446 -1.182 -0.402 H21 X9E 33 
X9E H22 H22 H 0 1 N N N N N N -0.933 5.487  -3.705 -8.454 -2.652 -0.244 H22 X9E 34 
X9E C1  C13 C 0 1 N N N N N N ?      ?      ?      -1.136 0.612  0.468  C1  X9E 35 
X9E C2  C14 C 0 1 N N N N N N ?      ?      ?      -0.524 -0.437 1.399  C2  X9E 36 
X9E C6  C15 C 0 1 N N N N N N ?      ?      ?      -1.597 -0.062 -0.826 C6  X9E 37 
X9E C4  C16 C 0 1 N N N N N N ?      ?      ?      1.722  0.127  0.510  C4  X9E 38 
X9E N1  N1  N 0 1 N N N N N N ?      ?      ?      2.833  -0.095 -0.219 N1  X9E 39 
X9E C9  C17 C 0 1 N N N N N N ?      ?      ?      3.166  -1.256 -0.799 C9  X9E 40 
X9E O1  O2  O 0 1 N N N N N N ?      ?      ?      4.323  -1.215 -1.468 O1  X9E 41 
X9E C7  C18 C 0 1 N N N N N N ?      ?      ?      3.877  0.899  -0.512 C7  X9E 42 
X9E C8  C19 C 0 1 N N N N N N ?      ?      ?      4.897  0.120  -1.365 C8  X9E 43 
X9E O3  O3  O 0 1 N N N N N N ?      ?      ?      2.478  -2.255 -0.725 O3  X9E 44 
X9E O2  O4  O 0 1 N N N N N N ?      ?      ?      1.502  1.231  0.959  O2  X9E 45 
X9E O4  O5  O 0 1 N N N N N N ?      ?      ?      -1.459 -1.497 1.604  O4  X9E 46 
X9E C3  C20 C 0 1 N N N N N N ?      ?      ?      0.752  -0.998 0.767  C3  X9E 47 
X9E C14 C21 C 0 1 N N N N N N ?      ?      ?      1.388  -2.013 1.717  C14 X9E 48 
X9E C15 C22 C 0 1 N N N N N N ?      ?      ?      0.470  -3.229 1.855  C15 X9E 49 
X9E C16 C23 C 0 1 N N N N N N ?      ?      ?      3.295  2.072  -1.304 C16 X9E 50 
X9E C17 C24 C 0 1 Y N N N N N ?      ?      ?      6.237  0.067  -0.677 C17 X9E 51 
X9E C18 C25 C 0 1 Y N N N N N ?      ?      ?      7.236  0.950  -1.042 C18 X9E 52 
X9E C19 C26 C 0 1 Y N N N N N ?      ?      ?      8.465  0.902  -0.411 C19 X9E 53 
X9E C20 C27 C 0 1 Y N N N N N ?      ?      ?      8.695  -0.029 0.584  C20 X9E 54 
X9E C21 C28 C 0 1 Y N N N N N ?      ?      ?      7.695  -0.912 0.950  C21 X9E 55 
X9E C22 C29 C 0 1 Y N N N N N ?      ?      ?      6.465  -0.860 0.322  C22 X9E 56 
X9E H4  H4  H 0 1 N N N N N N ?      ?      ?      -0.390 1.372  0.237  H4  X9E 57 
X9E H23 H23 H 0 1 N N N N N N ?      ?      ?      -0.282 0.024  2.357  H23 X9E 58 
X9E H24 H24 H 0 1 N N N N N N ?      ?      ?      -2.402 -0.762 -0.604 H24 X9E 59 
X9E H25 H25 H 0 1 N N N N N N ?      ?      ?      -1.954 0.696  -1.523 H25 X9E 60 
X9E H26 H26 H 0 1 N N N N N N ?      ?      ?      -0.761 -0.601 -1.272 H26 X9E 61 
X9E H27 H27 H 0 1 N N N N N N ?      ?      ?      4.341  1.251  0.410  H27 X9E 62 
X9E H28 H28 H 0 1 N N N N N N ?      ?      ?      4.990  0.573  -2.352 H28 X9E 63 
X9E H29 H29 H 0 1 N N N N N N ?      ?      ?      -1.720 -1.954 0.793  H29 X9E 64 
X9E H30 H30 H 0 1 N N N N N N ?      ?      ?      0.505  -1.487 -0.176 H30 X9E 65 
X9E H31 H31 H 0 1 N N N N N N ?      ?      ?      2.352  -2.330 1.318  H31 X9E 66 
X9E H32 H32 H 0 1 N N N N N N ?      ?      ?      1.533  -1.555 2.695  H32 X9E 67 
X9E H33 H33 H 0 1 N N N N N N ?      ?      ?      0.996  -4.024 2.383  H33 X9E 68 
X9E H34 H34 H 0 1 N N N N N N ?      ?      ?      -0.422 -2.948 2.415  H34 X9E 69 
X9E H35 H35 H 0 1 N N N N N N ?      ?      ?      0.181  -3.580 0.864  H35 X9E 70 
X9E H36 H36 H 0 1 N N N N N N ?      ?      ?      2.524  2.564  -0.710 H36 X9E 71 
X9E H37 H37 H 0 1 N N N N N N ?      ?      ?      4.087  2.784  -1.533 H37 X9E 72 
X9E H38 H38 H 0 1 N N N N N N ?      ?      ?      2.858  1.702  -2.232 H38 X9E 73 
X9E H39 H39 H 0 1 N N N N N N ?      ?      ?      7.056  1.677  -1.820 H39 X9E 74 
X9E H40 H40 H 0 1 N N N N N N ?      ?      ?      9.246  1.591  -0.697 H40 X9E 75 
X9E H41 H41 H 0 1 N N N N N N ?      ?      ?      9.655  -0.068 1.077  H41 X9E 76 
X9E H42 H42 H 0 1 N N N N N N ?      ?      ?      7.875  -1.639 1.727  H42 X9E 77 
X9E H43 H43 H 0 1 N N N N N N ?      ?      ?      5.684  -1.549 0.608  H43 X9E 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X9E C5  C03 SING N N 1  
X9E O14 C09 SING N N 2  
X9E O14 C10 SING N N 3  
X9E C03 C05 SING N N 4  
X9E C03 C04 DOUB N Z 5  
X9E C07 C04 SING N N 6  
X9E C07 C08 SING N N 7  
X9E C05 C06 SING N N 8  
X9E C11 C09 SING N N 9  
X9E C11 C12 SING N N 10 
X9E C09 C10 SING N N 11 
X9E C09 C08 SING N N 12 
X9E C10 C13 SING N N 13 
X9E C10 H1  SING N N 14 
X9E C5  H2  SING N N 15 
X9E C5  H3  SING N N 16 
X9E C04 H5  SING N N 17 
X9E C05 H6  SING N N 18 
X9E C05 H7  SING N N 19 
X9E C06 H8  SING N N 20 
X9E C06 H9  SING N N 21 
X9E C06 H10 SING N N 22 
X9E C07 H11 SING N N 23 
X9E C07 H12 SING N N 24 
X9E C08 H13 SING N N 25 
X9E C08 H14 SING N N 26 
X9E C11 H15 SING N N 27 
X9E C11 H16 SING N N 28 
X9E C12 H17 SING N N 29 
X9E C12 H18 SING N N 30 
X9E C12 H19 SING N N 31 
X9E C13 H20 SING N N 32 
X9E C13 H21 SING N N 33 
X9E C13 H22 SING N N 34 
X9E C5  C1  SING N N 35 
X9E C1  C2  SING N N 36 
X9E C1  C6  SING N N 37 
X9E C4  N1  SING N N 38 
X9E N1  C9  SING N N 39 
X9E C9  O1  SING N N 40 
X9E N1  C7  SING N N 41 
X9E C7  C8  SING N N 42 
X9E O1  C8  SING N N 43 
X9E C9  O3  DOUB N N 44 
X9E C4  O2  DOUB N N 45 
X9E C2  O4  SING N N 46 
X9E C2  C3  SING N N 47 
X9E C3  C4  SING N N 48 
X9E C3  C14 SING N N 49 
X9E C14 C15 SING N N 50 
X9E C7  C16 SING N N 51 
X9E C8  C17 SING N N 52 
X9E C17 C18 SING Y N 53 
X9E C18 C19 DOUB Y N 54 
X9E C19 C20 SING Y N 55 
X9E C20 C21 DOUB Y N 56 
X9E C21 C22 SING Y N 57 
X9E C22 C17 DOUB Y N 58 
X9E C1  H4  SING N N 59 
X9E C2  H23 SING N N 60 
X9E C6  H24 SING N N 61 
X9E C6  H25 SING N N 62 
X9E C6  H26 SING N N 63 
X9E C7  H27 SING N N 64 
X9E C8  H28 SING N N 65 
X9E O4  H29 SING N N 66 
X9E C3  H30 SING N N 67 
X9E C14 H31 SING N N 68 
X9E C14 H32 SING N N 69 
X9E C15 H33 SING N N 70 
X9E C15 H34 SING N N 71 
X9E C15 H35 SING N N 72 
X9E C16 H36 SING N N 73 
X9E C16 H37 SING N N 74 
X9E C16 H38 SING N N 75 
X9E C18 H39 SING N N 76 
X9E C19 H40 SING N N 77 
X9E C20 H41 SING N N 78 
X9E C21 H42 SING N N 79 
X9E C22 H43 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X9E InChI            InChI                1.06  "InChI=1S/C29H43NO5/c1-7-22(14-13-17-29(9-3)21(6)35-29)18-19(4)25(31)24(8-2)27(32)30-20(5)26(34-28(30)33)23-15-11-10-12-16-23/h10-12,14-16,19-21,24-26,31H,7-9,13,17-18H2,1-6H3/b22-14-/t19?,20?,21-,24?,25?,26?,29-/m1/s1" 
X9E InChIKey         InChI                1.06  MAKHZPRKABYPIS-LKCQFNNRSA-N                                                                                                                                                                                                 
X9E SMILES_CANONICAL CACTVS               3.385 "CCC(C(O)C(C)C\C(CC)=C/CC[C@@]1(CC)O[C@@H]1C)C(=O)N2C(C)C(OC2=O)c3ccccc3"                                                                                                                                                   
X9E SMILES           CACTVS               3.385 "CCC(C(O)C(C)CC(CC)=CCC[C]1(CC)O[CH]1C)C(=O)N2C(C)C(OC2=O)c3ccccc3"                                                                                                                                                         
X9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(C(C(C)C/C(=C\CC[C@@]1([C@H](O1)C)CC)/CC)O)C(=O)N2C(C(OC2=O)c3ccccc3)C"                                                                                                                                                 
X9E SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C(C(C)CC(=CCCC1(C(O1)C)CC)CC)O)C(=O)N2C(C(OC2=O)c3ccccc3)C"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           X9E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[(~{Z})-2,6-diethyl-9-[(2~{R},3~{R})-2-ethyl-3-methyl-oxiran-2-yl]-4-methyl-3-oxidanyl-non-6-enoyl]-4-methyl-5-phenyl-1,3-oxazolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X9E "Create component" 2023-10-25 PDBJ 
X9E "Modify name"      2023-11-06 PDBJ 
X9E "Modify name"      2024-01-17 PDBJ 
X9E "Initial release"  2024-11-06 RCSB 
# 
