data_Y1U
# 
_chem_comp.id                                    Y1U 
_chem_comp.name                                  "3-(2,6-dichlorophenyl)-7-{[(2R)-2-hydroxy-2-phenylethyl]amino}-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H19 Cl2 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.314 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y1U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y1U C10  C1  C  0 1 Y N N N N N -13.958 15.320 51.035 6.427  1.398  -0.689 C10  Y1U 1  
Y1U C15  C2  C  0 1 Y N N N N N -16.213 9.235  48.363 -0.504 0.399  -1.307 C15  Y1U 2  
Y1U C16  C3  C  0 1 N N N N N N -11.303 9.685  48.187 1.247  -0.776 3.051  C16  Y1U 3  
Y1U C17  C4  C  0 1 Y N N N N N -13.964 15.210 52.441 7.076  0.283  -1.186 C17  Y1U 4  
Y1U C20  C5  C  0 1 Y N N N N N -14.924 7.799  47.080 -1.880 -0.062 0.486  C20  Y1U 5  
Y1U C22  C6  C  0 1 N N N N N N -13.546 6.308  45.687 -4.317 0.061  0.121  C22  Y1U 6  
Y1U C23  C7  C  0 1 N N R N N N -13.961 5.257  44.628 -5.607 -0.137 0.919  C23  Y1U 7  
Y1U C24  C8  C  0 1 Y N N N N N -12.715 4.795  43.937 -6.794 0.114  0.025  C24  Y1U 8  
Y1U C26  C9  C  0 1 Y N N N N N -12.099 5.642  43.013 -7.390 1.361  0.001  C26  Y1U 9  
Y1U C27  C10 C  0 1 Y N N N N N -10.493 3.843  42.516 -8.972 0.573  -1.616 C27  Y1U 10 
Y1U C28  C11 C  0 1 Y N N N N N -11.114 3.000  43.469 -8.372 -0.672 -1.595 C28  Y1U 11 
Y1U N1   N1  N  0 1 N N N N N N -13.883 11.701 50.029 3.077  0.022  -0.038 N1   Y1U 12 
Y1U C2   C12 C  0 1 Y N N N N N -13.907 12.875 50.847 4.420  0.110  -0.424 C2   Y1U 13 
Y1U C3   C13 C  0 1 N N N N N N -15.219 11.081 49.728 2.001  0.292  -1.009 C3   Y1U 14 
Y1U C4   C14 C  0 1 N N N N N N -12.635 11.275 49.561 2.750  -0.308 1.225  C4   Y1U 15 
Y1U C5   C15 C  0 1 Y N N N N N -13.929 14.136 50.261 5.101  1.315  -0.307 C5   Y1U 16 
Y1U C6   C16 C  0 1 Y N N N N N -13.914 12.786 52.223 5.072  -1.006 -0.934 C6   Y1U 17 
Y1U C7   C17 C  0 1 Y N N N N N -15.077 9.948  48.776 0.585  0.173  -0.501 C7   Y1U 18 
Y1U N8   N2  N  0 1 N N N N N N -12.620 10.140 48.677 1.485  -0.409 1.653  N8   Y1U 19 
Y1U O9   O1  O  0 1 N N N N N N -11.569 11.845 49.875 3.647  -0.527 2.015  O9   Y1U 20 
Y1U CL11 CL1 CL 0 0 N N N N N N -13.938 14.209 48.531 4.287  2.716  0.317  CL11 Y1U 21 
Y1U C12  C18 C  0 1 Y N N N N N -13.944 13.934 53.049 6.400  -0.917 -1.308 C12  Y1U 22 
Y1U CL13 CL2 CL 0 0 N N N N N N -13.897 11.218 52.927 4.223  -2.512 -1.093 CL13 Y1U 23 
Y1U C14  C19 C  0 1 Y N N N N N -13.819 9.501  48.275 0.391  -0.180 0.835  C14  Y1U 24 
Y1U N18  N3  N  0 1 Y N N N N N -13.711 8.426  47.411 -0.851 -0.287 1.291  N18  Y1U 25 
Y1U N19  N4  N  0 1 Y N N N N N -16.209 8.145  47.527 -1.719 0.275  -0.785 N19  Y1U 26 
Y1U N21  N5  N  0 1 N N N N N N -14.819 6.721  46.209 -3.163 -0.182 0.990  N21  Y1U 27 
Y1U O25  O2  O  0 1 N N N N N N -14.669 4.205  45.244 -5.659 -1.476 1.416  O25  Y1U 28 
Y1U C29  C20 C  0 1 Y N N N N N -10.984 5.154  42.295 -8.479 1.590  -0.819 C29  Y1U 29 
Y1U C30  C21 C  0 1 Y N N N N N -12.240 3.497  44.179 -7.283 -0.902 -0.775 C30  Y1U 30 
Y1U H33  H1  H  0 1 N N N N N N -13.975 16.289 50.558 6.958  2.334  -0.594 H33  Y1U 31 
Y1U H35  H2  H  0 1 N N N N N N -17.170 9.571  48.733 -0.375 0.678  -2.343 H35  Y1U 32 
Y1U H38  H3  H  0 1 N N N N N N -11.437 8.816  47.526 2.202  -0.920 3.556  H38  Y1U 33 
Y1U H36  H4  H  0 1 N N N N N N -10.818 10.499 47.629 0.690  0.020  3.546  H36  Y1U 34 
Y1U H37  H5  H  0 1 N N N N N N -10.672 9.401  49.042 0.672  -1.701 3.091  H37  Y1U 35 
Y1U H39  H6  H  0 1 N N N N N N -13.984 16.100 53.053 8.113  0.349  -1.480 H39  Y1U 36 
Y1U H42  H7  H  0 1 N N N N N N -13.010 7.151  45.226 -4.296 -0.638 -0.715 H42  Y1U 37 
Y1U H41  H8  H  0 1 N N N N N N -12.918 5.860  46.471 -4.277 1.083  -0.258 H41  Y1U 38 
Y1U H43  H9  H  0 1 N N N N N N -14.606 5.757  43.890 -5.628 0.562  1.755  H43  Y1U 39 
Y1U H45  H10 H  0 1 N N N N N N -12.466 6.645  42.851 -7.006 2.155  0.623  H45  Y1U 40 
Y1U H46  H11 H  0 1 N N N N N N -9.642  3.486  41.955 -9.822 0.753  -2.256 H46  Y1U 41 
Y1U H47  H12 H  0 1 N N N N N N -10.741 2.003  43.652 -8.757 -1.467 -2.218 H47  Y1U 42 
Y1U H31  H13 H  0 1 N N N N N N -15.663 10.711 50.664 2.138  1.303  -1.392 H31  Y1U 43 
Y1U H32  H14 H  0 1 N N N N N N -15.878 11.843 49.285 2.119  -0.400 -1.844 H32  Y1U 44 
Y1U H34  H15 H  0 1 N N N N N N -13.951 13.837 54.125 6.907  -1.784 -1.705 H34  Y1U 45 
Y1U H40  H16 H  0 1 N N N N N N -15.198 5.930  46.689 -3.298 -0.428 1.919  H40  Y1U 46 
Y1U H44  H17 H  0 1 N N N N N N -14.920 3.565  44.588 -5.644 -2.152 0.725  H44  Y1U 47 
Y1U H48  H18 H  0 1 N N N N N N -10.499 5.789  41.568 -8.946 2.564  -0.838 H48  Y1U 48 
Y1U H49  H19 H  0 1 N N N N N N -12.733 2.872  44.909 -6.815 -1.875 -0.760 H49  Y1U 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y1U N1  C2   SING N N 1  
Y1U N1  C3   SING N N 2  
Y1U N1  C4   SING N N 3  
Y1U C2  C5   DOUB Y N 4  
Y1U C2  C6   SING Y N 5  
Y1U C3  C7   SING N N 6  
Y1U C4  N8   SING N N 7  
Y1U C4  O9   DOUB N N 8  
Y1U C5  C10  SING Y N 9  
Y1U C5  CL11 SING N N 10 
Y1U C6  C12  DOUB Y N 11 
Y1U C6  CL13 SING N N 12 
Y1U C7  C14  DOUB Y N 13 
Y1U C7  C15  SING Y N 14 
Y1U N8  C16  SING N N 15 
Y1U N8  C14  SING N N 16 
Y1U C10 C17  DOUB Y N 17 
Y1U C12 C17  SING Y N 18 
Y1U C14 N18  SING Y N 19 
Y1U C15 N19  DOUB Y N 20 
Y1U N18 C20  DOUB Y N 21 
Y1U N19 C20  SING Y N 22 
Y1U C20 N21  SING N N 23 
Y1U N21 C22  SING N N 24 
Y1U C22 C23  SING N N 25 
Y1U C23 C24  SING N N 26 
Y1U C23 O25  SING N N 27 
Y1U C24 C26  DOUB Y N 28 
Y1U C24 C30  SING Y N 29 
Y1U C26 C29  SING Y N 30 
Y1U C27 C28  SING Y N 31 
Y1U C27 C29  DOUB Y N 32 
Y1U C28 C30  DOUB Y N 33 
Y1U C10 H33  SING N N 34 
Y1U C15 H35  SING N N 35 
Y1U C16 H38  SING N N 36 
Y1U C16 H36  SING N N 37 
Y1U C16 H37  SING N N 38 
Y1U C17 H39  SING N N 39 
Y1U C22 H42  SING N N 40 
Y1U C22 H41  SING N N 41 
Y1U C23 H43  SING N N 42 
Y1U C26 H45  SING N N 43 
Y1U C27 H46  SING N N 44 
Y1U C28 H47  SING N N 45 
Y1U C3  H31  SING N N 46 
Y1U C3  H32  SING N N 47 
Y1U C12 H34  SING N N 48 
Y1U N21 H40  SING N N 49 
Y1U O25 H44  SING N N 50 
Y1U C29 H48  SING N N 51 
Y1U C30 H49  SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y1U SMILES           ACDLabs              12.01 "Clc1cccc(Cl)c1N1Cc2cnc(nc2N(C)C1=O)NCC(O)c1ccccc1"                                                                                                          
Y1U InChI            InChI                1.06  "InChI=1S/C21H19Cl2N5O2/c1-27-19-14(12-28(21(27)30)18-15(22)8-5-9-16(18)23)10-24-20(26-19)25-11-17(29)13-6-3-2-4-7-13/h2-10,17,29H,11-12H2,1H3,(H,24,25,26)" 
Y1U InChIKey         InChI                1.06  YYLSSOPTVUREJF-UHFFFAOYSA-N                                                                                                                                  
Y1U SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(Cc2cnc(NC[C@H](O)c3ccccc3)nc12)c4c(Cl)cccc4Cl"                                                                                                    
Y1U SMILES           CACTVS               3.385 "CN1C(=O)N(Cc2cnc(NC[CH](O)c3ccccc3)nc12)c4c(Cl)cccc4Cl"                                                                                                     
Y1U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(cnc(n2)NC[C@@H](c3ccccc3)O)CN(C1=O)c4c(cccc4Cl)Cl"                                                                                                   
Y1U SMILES           "OpenEye OEToolkits" 2.0.7 "CN1c2c(cnc(n2)NCC(c3ccccc3)O)CN(C1=O)c4c(cccc4Cl)Cl"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y1U "SYSTEMATIC NAME" ACDLabs              12.01 "3-(2,6-dichlorophenyl)-7-{[(2R)-2-hydroxy-2-phenylethyl]amino}-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one"   
Y1U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2,6-bis(chloranyl)phenyl]-1-methyl-7-[[(2~{R})-2-oxidanyl-2-phenyl-ethyl]amino]-4~{H}-pyrimido[4,5-d]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y1U "Create component" 2023-06-09 RCSB 
Y1U "Initial release"  2024-12-18 RCSB 
# 
