data_Y7E
# 
_chem_comp.id                                    Y7E 
_chem_comp.name                                  "(3S)-3-{2-[6-(4-acetylpiperazin-1-yl)-4-oxoquinazolin-3(4H)-yl]acetamido}-N-methyl-3-(4-nitrophenyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H29 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        535.552 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y7E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y7E C13 C1  C 0  1 N N N N N N -14.232 7.316  52.353 -6.556 -3.945 2.506  C13 Y7E 1  
Y7E C15 C2  C 0  1 N N N N N N -15.358 12.469 48.167 -0.823 -0.407 -2.046 C15 Y7E 2  
Y7E C18 C3  C 0  1 Y N N N N N -16.684 14.747 42.537 4.968  -0.599 0.031  C18 Y7E 3  
Y7E C19 C4  C 0  1 Y N N N N N -18.076 15.043 42.848 5.176  -1.935 -0.308 C19 Y7E 4  
Y7E C20 C5  C 0  1 Y N N N N N -18.568 14.778 44.110 4.189  -2.670 -0.901 C20 Y7E 5  
Y7E C21 C6  C 0  1 Y N N N N N -15.849 14.180 43.510 3.751  0.009  -0.228 C21 Y7E 6  
Y7E C23 C7  C 0  1 N N N N N N -14.758 14.576 40.958 7.189  -0.701 0.833  C23 Y7E 7  
Y7E C24 C8  C 0  1 N N N N N N -14.465 14.768 39.487 8.217  0.073  1.664  C24 Y7E 8  
Y7E C26 C9  C 0  1 N N N N N N -16.818 14.260 38.915 7.295  2.203  0.671  C26 Y7E 9  
Y7E C27 C10 C 0  1 N N N N N N -17.067 14.114 40.391 6.303  1.345  -0.121 C27 Y7E 10 
Y7E C28 C11 C 0  1 Y N N N N N -16.358 13.914 44.735 2.736  -0.728 -0.832 C28 Y7E 11 
Y7E C1  C12 C 0  1 Y N N N N N -11.321 9.579  44.927 -6.750 1.656  -1.182 C1  Y7E 12 
Y7E C2  C13 C 0  1 Y N N N N N -11.566 8.480  44.069 -7.275 2.173  -0.013 C2  Y7E 13 
Y7E C3  C14 C 0  1 Y N N N N N -12.526 7.491  44.317 -6.728 1.819  1.206  C3  Y7E 14 
Y7E C4  C15 C 0  1 Y N N N N N -13.294 7.613  45.491 -5.656 0.948  1.256  C4  Y7E 15 
Y7E C5  C16 C 0  1 Y N N N N N -13.088 8.742  46.374 -5.130 0.432  0.087  C5  Y7E 16 
Y7E C6  C17 C 0  1 Y N N N N N -12.119 9.711  46.084 -5.677 0.785  -1.132 C6  Y7E 17 
Y7E C7  C18 C 0  1 N N R N N N -13.940 8.818  47.649 -3.961 -0.518 0.141  C7  Y7E 18 
Y7E C8  C19 C 0  1 N N N N N N -13.117 8.077  48.756 -4.464 -1.955 -0.007 C8  Y7E 19 
Y7E C9  C20 C 0  1 N N N N N N -14.040 7.819  49.967 -5.285 -2.328 1.200  C9  Y7E 20 
Y7E N10 N1  N 0  1 N N N N N N -13.436 7.599  51.174 -5.758 -3.583 1.332  N10 Y7E 21 
Y7E O11 O1  O 0  1 N N N N N N -15.269 7.788  49.877 -5.519 -1.499 2.054  O11 Y7E 22 
Y7E N12 N2  N 0  1 N N N N N N -14.168 10.184 48.154 -3.031 -0.210 -0.948 N12 Y7E 23 
Y7E C14 C21 C 0  1 N N N N N N -15.137 10.990 47.579 -1.750 -0.624 -0.877 C14 Y7E 24 
Y7E O16 O2  O 0  1 N N N N N N -15.801 10.541 46.602 -1.344 -1.169 0.126  O16 Y7E 25 
Y7E N17 N3  N 0  1 N N N N N N -16.097 13.103 47.069 0.502  -0.941 -1.723 N17 Y7E 26 
Y7E N22 N4  N 0  1 N N N N N N -16.165 14.943 41.229 5.992  0.130  0.643  N22 Y7E 27 
Y7E N25 N5  N 0  1 N N N N N N -15.404 14.028 38.630 8.458  1.372  1.018  N25 Y7E 28 
Y7E C29 C22 C 0  1 Y N N N N N -17.696 14.198 45.056 2.952  -2.082 -1.175 C29 Y7E 29 
Y7E N30 N6  N 0  1 N N N N N N -18.214 13.928 46.325 1.948  -2.780 -1.763 N30 Y7E 30 
Y7E C31 C23 C 0  1 N N N N N N -17.458 13.396 47.265 0.798  -2.235 -2.017 C31 Y7E 31 
Y7E C32 C24 C 0  1 N N N N N N -15.486 13.342 45.772 1.422  -0.141 -1.134 C32 Y7E 32 
Y7E O33 O3  O 0  1 N N N N N N -14.306 13.087 45.606 1.171  1.020  -0.865 O33 Y7E 33 
Y7E C34 C25 C 0  1 N N N N N N -14.969 12.990 37.754 9.712  1.790  0.751  C34 Y7E 34 
Y7E C35 C26 C 0  1 N N N N N N -13.482 12.891 37.472 9.943  3.175  0.203  C35 Y7E 35 
Y7E O36 O4  O 0  1 N N N N N N -15.781 12.183 37.224 10.653 1.052  0.951  O36 Y7E 36 
Y7E N37 N7  N 1  1 N N N N N N -10.735 8.359  42.863 -8.424 3.105  -0.067 N37 Y7E 37 
Y7E O38 O5  O 0  1 N N N N N N -10.925 7.401  42.097 -8.906 3.417  -1.141 O38 Y7E 38 
Y7E O39 O6  O -1 1 N N N N N N -9.912  9.199  42.705 -8.887 3.560  0.964  O39 Y7E 39 
Y7E H51 H1  H 0  1 N N N N N N -13.568 7.170  53.218 -6.847 -4.993 2.438  H51 Y7E 40 
Y7E H49 H2  H 0  1 N N N N N N -14.909 8.160  52.549 -5.965 -3.791 3.409  H49 Y7E 41 
Y7E H50 H3  H 0  1 N N N N N N -14.823 6.403  52.186 -7.449 -3.321 2.545  H50 Y7E 42 
Y7E H52 H4  H 0  1 N N N N N N -15.950 12.450 49.094 -1.218 -0.921 -2.922 H52 Y7E 43 
Y7E H53 H5  H 0  1 N N N N N N -14.400 12.976 48.354 -0.745 0.660  -2.254 H53 Y7E 44 
Y7E H54 H6  H 0  1 N N N N N N -18.721 15.468 42.093 6.131  -2.395 -0.100 H54 Y7E 45 
Y7E H55 H7  H 0  1 N N N N N N -19.592 15.008 44.366 4.365  -3.703 -1.159 H55 Y7E 46 
Y7E H56 H8  H 0  1 N N N N N N -14.816 13.959 43.285 3.591  1.044  0.035  H56 Y7E 47 
Y7E H57 H9  H 0  1 N N N N N N -14.090 15.217 41.552 7.617  -0.948 -0.138 H57 Y7E 48 
Y7E H58 H10 H 0  1 N N N N N N -14.594 13.523 41.231 6.916  -1.618 1.355  H58 Y7E 49 
Y7E H59 H11 H 0  1 N N N N N N -14.538 15.839 39.249 7.830  0.232  2.671  H59 Y7E 50 
Y7E H60 H12 H 0  1 N N N N N N -13.444 14.415 39.281 9.149  -0.490 1.712  H60 Y7E 51 
Y7E H61 H13 H 0  1 N N N N N N -17.094 15.276 38.596 7.617  3.047  0.061  H61 Y7E 52 
Y7E H62 H14 H 0  1 N N N N N N -17.427 13.526 38.367 6.819  2.569  1.580  H62 Y7E 53 
Y7E H64 H15 H 0  1 N N N N N N -16.924 13.058 40.665 5.388  1.912  -0.292 H64 Y7E 54 
Y7E H63 H16 H 0  1 N N N N N N -18.106 14.410 40.600 6.744  1.070  -1.079 H63 Y7E 55 
Y7E H40 H17 H 0  1 N N N N N N -10.545 10.296 44.703 -7.180 1.929  -2.135 H40 Y7E 56 
Y7E H41 H18 H 0  1 N N N N N N -12.672 6.667  43.634 -7.139 2.224  2.120  H41 Y7E 57 
Y7E H42 H19 H 0  1 N N N N N N -14.035 6.866  45.732 -5.228 0.673  2.209  H42 Y7E 58 
Y7E H43 H20 H 0  1 N N N N N N -11.983 10.556 46.743 -5.266 0.382  -2.046 H43 Y7E 59 
Y7E H44 H21 H 0  1 N N N N N N -14.896 8.296  47.492 -3.449 -0.409 1.098  H44 Y7E 60 
Y7E H46 H22 H 0  1 N N N N N N -12.745 7.119  48.363 -5.080 -2.033 -0.903 H46 Y7E 61 
Y7E H45 H23 H 0  1 N N N N N N -12.266 8.701  49.065 -3.613 -2.631 -0.091 H45 Y7E 62 
Y7E H47 H24 H 0  1 N N N N N N -12.439 7.633  51.244 -5.571 -4.246 0.649  H47 Y7E 63 
Y7E H48 H25 H 0  1 N N N N N N -13.620 10.531 48.916 -3.337 0.291  -1.720 H48 Y7E 64 
Y7E H65 H26 H 0  1 N N N N N N -17.902 13.176 48.225 0.037  -2.840 -2.486 H65 Y7E 65 
Y7E H68 H27 H 0  1 N N N N N N -13.294 12.055 36.782 9.000  3.720  0.182  H68 Y7E 66 
Y7E H66 H28 H 0  1 N N N N N N -13.132 13.829 37.015 10.655 3.703  0.838  H66 Y7E 67 
Y7E H67 H29 H 0  1 N N N N N N -12.941 12.718 38.414 10.343 3.103  -0.809 H67 Y7E 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y7E C1  C6  DOUB Y N 1  
Y7E C1  C2  SING Y N 2  
Y7E C2  N37 SING N N 3  
Y7E C2  C3  DOUB Y N 4  
Y7E C3  C4  SING Y N 5  
Y7E C4  C5  DOUB Y N 6  
Y7E C5  C6  SING Y N 7  
Y7E C5  C7  SING N N 8  
Y7E C7  C8  SING N N 9  
Y7E C7  N12 SING N N 10 
Y7E C8  C9  SING N N 11 
Y7E C9  N10 SING N N 12 
Y7E C9  O11 DOUB N N 13 
Y7E N10 C13 SING N N 14 
Y7E N12 C14 SING N N 15 
Y7E C14 C15 SING N N 16 
Y7E C14 O16 DOUB N N 17 
Y7E C15 N17 SING N N 18 
Y7E N17 C31 SING N N 19 
Y7E N17 C32 SING N N 20 
Y7E C18 C19 DOUB Y N 21 
Y7E C18 C21 SING Y N 22 
Y7E C18 N22 SING N N 23 
Y7E C19 C20 SING Y N 24 
Y7E C20 C29 DOUB Y N 25 
Y7E C21 C28 DOUB Y N 26 
Y7E N22 C23 SING N N 27 
Y7E N22 C27 SING N N 28 
Y7E C23 C24 SING N N 29 
Y7E C24 N25 SING N N 30 
Y7E N25 C26 SING N N 31 
Y7E N25 C34 SING N N 32 
Y7E C26 C27 SING N N 33 
Y7E C28 C29 SING Y N 34 
Y7E C28 C32 SING N N 35 
Y7E C29 N30 SING N N 36 
Y7E N30 C31 DOUB N N 37 
Y7E C32 O33 DOUB N N 38 
Y7E C34 C35 SING N N 39 
Y7E C34 O36 DOUB N N 40 
Y7E N37 O38 DOUB N N 41 
Y7E N37 O39 SING N N 42 
Y7E C13 H51 SING N N 43 
Y7E C13 H49 SING N N 44 
Y7E C13 H50 SING N N 45 
Y7E C15 H52 SING N N 46 
Y7E C15 H53 SING N N 47 
Y7E C19 H54 SING N N 48 
Y7E C20 H55 SING N N 49 
Y7E C21 H56 SING N N 50 
Y7E C23 H57 SING N N 51 
Y7E C23 H58 SING N N 52 
Y7E C24 H59 SING N N 53 
Y7E C24 H60 SING N N 54 
Y7E C26 H61 SING N N 55 
Y7E C26 H62 SING N N 56 
Y7E C27 H64 SING N N 57 
Y7E C27 H63 SING N N 58 
Y7E C1  H40 SING N N 59 
Y7E C3  H41 SING N N 60 
Y7E C4  H42 SING N N 61 
Y7E C6  H43 SING N N 62 
Y7E C7  H44 SING N N 63 
Y7E C8  H46 SING N N 64 
Y7E C8  H45 SING N N 65 
Y7E N10 H47 SING N N 66 
Y7E N12 H48 SING N N 67 
Y7E C31 H65 SING N N 68 
Y7E C35 H68 SING N N 69 
Y7E C35 H66 SING N N 70 
Y7E C35 H67 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y7E SMILES           ACDLabs              12.01 "O=C(C)N1CCN(CC1)c1cc2C(=O)N(CC(=O)NC(CC(=O)NC)c3ccc(cc3)[N+]([O-])=O)C=Nc2cc1"                                                                                                                     
Y7E InChI            InChI                1.06  "InChI=1S/C26H29N7O6/c1-17(34)30-9-11-31(12-10-30)20-7-8-22-21(13-20)26(37)32(16-28-22)15-25(36)29-23(14-24(35)27-2)18-3-5-19(6-4-18)33(38)39/h3-8,13,16,23H,9-12,14-15H2,1-2H3,(H,27,35)(H,29,36)" 
Y7E InChIKey         InChI                1.06  CAJKWQNVIJCHQF-UHFFFAOYSA-N                                                                                                                                                                         
Y7E SMILES_CANONICAL CACTVS               3.385 "CNC(=O)C[C@@H](NC(=O)CN1C=Nc2ccc(cc2C1=O)N3CCN(CC3)C(C)=O)c4ccc(cc4)[N+]([O-])=O"                                                                                                                  
Y7E SMILES           CACTVS               3.385 "CNC(=O)C[CH](NC(=O)CN1C=Nc2ccc(cc2C1=O)N3CCN(CC3)C(C)=O)c4ccc(cc4)[N+]([O-])=O"                                                                                                                    
Y7E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)c2ccc3c(c2)C(=O)N(C=N3)CC(=O)N[C@H](CC(=O)NC)c4ccc(cc4)[N+](=O)[O-]"                                                                                                               
Y7E SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)c2ccc3c(c2)C(=O)N(C=N3)CC(=O)NC(CC(=O)NC)c4ccc(cc4)[N+](=O)[O-]"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y7E "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-{2-[6-(4-acetylpiperazin-1-yl)-4-oxoquinazolin-3(4H)-yl]acetamido}-N-methyl-3-(4-nitrophenyl)propanamide"                    
Y7E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-[2-[6-(4-ethanoylpiperazin-1-yl)-4-oxidanylidene-quinazolin-3-yl]ethanoylamino]-~{N}-methyl-3-(4-nitrophenyl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y7E "Create component" 2023-06-12 RCSB 
Y7E "Initial release"  2024-12-18 RCSB 
# 
