data_Y8U
# 
_chem_comp.id                                    Y8U 
_chem_comp.name                                  "tert-butyl (5S,8M,12aR)-8-(4-chloro-2-fluorophenyl)-6,12-dioxo-3,4,6,11,12,12a-hexahydropyrazino[2,1-c][1,4]benzodiazepine-2(1H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 Cl F N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.898 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y8U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G54 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y8U C01  C1  C  0 1 Y N N N N N -9.802  2.466  45.701 -5.676 -0.754 0.016  C01  Y8U 1  
Y8U C02  C2  C  0 1 Y N N N N N -9.160  1.269  45.414 -6.838 -0.011 -0.029 C02  Y8U 2  
Y8U C04  C3  C  0 1 Y N N N N N -9.646  1.533  43.055 -5.574 2.008  0.273  C04  Y8U 3  
Y8U C05  C4  C  0 1 Y N N N N N -10.278 2.729  43.367 -4.404 1.273  0.320  C05  Y8U 4  
Y8U C06  C5  C  0 1 Y N N N N N -10.378 3.236  44.681 -4.450 -0.116 0.191  C06  Y8U 5  
Y8U C07  C6  C  0 1 Y N N N N N -11.049 4.492  45.047 -3.198 -0.910 0.241  C07  Y8U 6  
Y8U C10  C7  C  0 1 Y N N N N N -11.517 6.842  44.692 -0.927 -1.296 -0.512 C10  Y8U 7  
Y8U C11  C8  C  0 1 Y N N N N N -12.365 6.839  45.840 -0.862 -2.418 0.314  C11  Y8U 8  
Y8U C13  C9  C  0 1 Y N N N N N -11.886 4.513  46.173 -3.110 -2.022 1.081  C13  Y8U 9  
Y8U C15  C10 C  0 1 N N N N N N -11.229 7.982  43.826 0.186  -0.826 -1.330 C15  Y8U 10 
Y8U C17  C11 C  0 1 N N R N N N -13.554 8.735  44.054 1.890  -1.353 0.295  C17  Y8U 11 
Y8U C18  C12 C  0 1 N N N N N N -13.616 9.019  45.534 1.509  -2.812 0.317  C18  Y8U 12 
Y8U C22  C13 C  0 1 N N N N N N -11.837 10.159 42.819 2.355  -0.019 -1.868 C22  Y8U 13 
Y8U C23  C14 C  0 1 N N N N N N -12.685 11.372 43.213 3.832  -0.231 -1.615 C23  Y8U 14 
Y8U C25  C15 C  0 1 N N N N N N -14.512 9.585  43.194 3.355  -1.237 0.652  C25  Y8U 15 
Y8U C26  C16 C  0 1 N N N N N N -15.081 11.975 43.528 5.022  0.494  0.372  C26  Y8U 16 
Y8U C03  C17 C  0 1 Y N N N N N -9.079  0.807  44.094 -6.789 1.367  0.099  C03  Y8U 17 
Y8U CL08 CL1 CL 0 0 N N N N N N -8.274  -0.702 43.759 -8.255 2.294  0.041  CL08 Y8U 18 
Y8U C09  C18 C  0 1 Y N N N N N -10.878 5.663  44.325 -2.119 -0.551 -0.550 C09  Y8U 19 
Y8U C12  C19 C  0 1 Y N N N N N -12.534 5.662  46.574 -1.952 -2.764 1.113  C12  Y8U 20 
Y8U F14  F1  F  0 1 N N N N N N -10.797 3.399  42.347 -3.219 1.899  0.491  F14  Y8U 21 
Y8U N16  N1  N  0 1 N N N N N N -12.188 8.940  43.592 1.483  -0.760 -0.963 N16  Y8U 22 
Y8U N19  N2  N  0 1 N N N N N N -13.093 7.990  46.353 0.255  -3.237 0.354  N19  Y8U 23 
Y8U O20  O1  O  0 1 N N N N N N -10.122 8.110  43.254 -0.083 -0.457 -2.457 O20  Y8U 24 
Y8U O21  O2  O  0 1 N N N N N N -14.084 10.045 46.060 2.396  -3.638 0.300  O21  Y8U 25 
Y8U N24  N3  N  0 1 N N N N N N -14.119 11.010 43.298 4.090  -0.307 -0.182 N24  Y8U 26 
Y8U O27  O3  O  0 1 N N N N N N -14.638 13.257 43.599 5.709  1.360  -0.398 O27  Y8U 27 
Y8U O28  O4  O  0 1 N N N N N N -16.278 11.702 43.699 5.242  0.435  1.565  O28  Y8U 28 
Y8U C29  C20 C  0 1 N N N N N N -15.330 14.232 44.386 6.696  2.191  0.266  C29  Y8U 29 
Y8U C30  C21 C  0 1 N N N N N N -15.966 15.345 43.547 7.752  1.302  0.927  C30  Y8U 30 
Y8U C31  C22 C  0 1 N N N N N N -16.418 13.559 45.229 7.369  3.103  -0.762 C31  Y8U 31 
Y8U C32  C23 C  0 1 N N N N N N -14.273 14.853 45.312 6.009  3.046  1.333  C32  Y8U 32 
Y8U H1   H1  H  0 1 N N N N N N -9.858  2.809  46.724 -5.718 -1.829 -0.080 H1   Y8U 33 
Y8U H2   H2  H  0 1 N N N N N N -8.720  0.691  46.213 -7.789 -0.505 -0.165 H2   Y8U 34 
Y8U H3   H3  H  0 1 N N N N N N -9.597  1.178  42.036 -5.541 3.082  0.373  H3   Y8U 35 
Y8U H4   H4  H  0 1 N N N N N N -12.026 3.605  46.741 -3.948 -2.298 1.704  H4   Y8U 36 
Y8U H5   H5  H  0 1 N N N N N N -13.821 7.679  43.901 1.319  -0.855 1.078  H5   Y8U 37 
Y8U H6   H6  H  0 1 N N N N N N -10.778 10.397 42.998 2.136  1.044  -1.768 H6   Y8U 38 
Y8U H7   H7  H  0 1 N N N N N N -11.991 9.954  41.749 2.131  -0.321 -2.891 H7   Y8U 39 
Y8U H8   H8  H  0 1 N N N N N N -12.349 11.744 44.192 4.150  -1.160 -2.090 H8   Y8U 40 
Y8U H9   H9  H  0 1 N N N N N N -12.557 12.161 42.458 4.395  0.600  -2.040 H9   Y8U 41 
Y8U H10  H10 H  0 1 N N N N N N -14.451 9.261  42.144 3.436  -0.911 1.689  H10  Y8U 42 
Y8U H11  H11 H  0 1 N N N N N N -15.543 9.459  43.557 3.815  -2.221 0.562  H11  Y8U 43 
Y8U H12  H12 H  0 1 N N N N N N -10.234 5.659  43.458 -2.193 0.307  -1.201 H12  Y8U 44 
Y8U H13  H13 H  0 1 N N N N N N -13.167 5.652  47.449 -1.885 -3.622 1.767  H13  Y8U 45 
Y8U H14  H14 H  0 1 N N N N N N -13.232 8.058  47.341 0.107  -4.194 0.414  H14  Y8U 46 
Y8U H15  H15 H  0 1 N N N N N N -16.479 16.057 44.210 8.241  0.693  0.166  H15  Y8U 47 
Y8U H16  H16 H  0 1 N N N N N N -15.183 15.870 42.981 8.493  1.926  1.425  H16  Y8U 48 
Y8U H17  H17 H  0 1 N N N N N N -16.693 14.907 42.847 7.272  0.652  1.659  H17  Y8U 49 
Y8U H18  H18 H  0 1 N N N N N N -16.941 14.319 45.828 6.617  3.737  -1.232 H18  Y8U 50 
Y8U H19  H19 H  0 1 N N N N N N -17.137 13.056 44.566 8.111  3.728  -0.263 H19  Y8U 51 
Y8U H20  H20 H  0 1 N N N N N N -15.957 12.818 45.899 7.859  2.495  -1.522 H20  Y8U 52 
Y8U H21  H21 H  0 1 N N N N N N -14.745 15.616 45.948 5.530  2.396  2.066  H21  Y8U 53 
Y8U H22  H22 H  0 1 N N N N N N -13.834 14.068 45.946 6.751  3.670  1.832  H22  Y8U 54 
Y8U H23  H23 H  0 1 N N N N N N -13.483 15.319 44.705 5.258  3.679  0.863  H23  Y8U 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y8U C01 C02  DOUB Y N 1  
Y8U C01 C06  SING Y N 2  
Y8U C02 C03  SING Y N 3  
Y8U C03 C04  DOUB Y N 4  
Y8U C03 CL08 SING N N 5  
Y8U C04 C05  SING Y N 6  
Y8U C05 C06  DOUB Y N 7  
Y8U C05 F14  SING N N 8  
Y8U C06 C07  SING N N 9  
Y8U C07 C09  DOUB Y N 10 
Y8U C07 C13  SING Y N 11 
Y8U C09 C10  SING Y N 12 
Y8U C10 C11  DOUB Y N 13 
Y8U C10 C15  SING N N 14 
Y8U C11 C12  SING Y N 15 
Y8U C11 N19  SING N N 16 
Y8U C12 C13  DOUB Y N 17 
Y8U C15 N16  SING N N 18 
Y8U C15 O20  DOUB N N 19 
Y8U N16 C17  SING N N 20 
Y8U N16 C22  SING N N 21 
Y8U C17 C18  SING N N 22 
Y8U C17 C25  SING N N 23 
Y8U C18 N19  SING N N 24 
Y8U C18 O21  DOUB N N 25 
Y8U C22 C23  SING N N 26 
Y8U C23 N24  SING N N 27 
Y8U N24 C25  SING N N 28 
Y8U N24 C26  SING N N 29 
Y8U C26 O27  SING N N 30 
Y8U C26 O28  DOUB N N 31 
Y8U O27 C29  SING N N 32 
Y8U C29 C30  SING N N 33 
Y8U C29 C31  SING N N 34 
Y8U C29 C32  SING N N 35 
Y8U C01 H1   SING N N 36 
Y8U C02 H2   SING N N 37 
Y8U C04 H3   SING N N 38 
Y8U C13 H4   SING N N 39 
Y8U C17 H5   SING N N 40 
Y8U C22 H6   SING N N 41 
Y8U C22 H7   SING N N 42 
Y8U C23 H8   SING N N 43 
Y8U C23 H9   SING N N 44 
Y8U C25 H10  SING N N 45 
Y8U C25 H11  SING N N 46 
Y8U C09 H12  SING N N 47 
Y8U C12 H13  SING N N 48 
Y8U N19 H14  SING N N 49 
Y8U C30 H15  SING N N 50 
Y8U C30 H16  SING N N 51 
Y8U C30 H17  SING N N 52 
Y8U C31 H18  SING N N 53 
Y8U C31 H19  SING N N 54 
Y8U C31 H20  SING N N 55 
Y8U C32 H21  SING N N 56 
Y8U C32 H22  SING N N 57 
Y8U C32 H23  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y8U SMILES           ACDLabs              12.01 "Clc1ccc(c(F)c1)c1ccc2NC(=O)C3CN(CCN3C(=O)c2c1)C(=O)OC(C)(C)C"                                                                                                                  
Y8U InChI            InChI                1.06  "InChI=1S/C23H23ClFN3O4/c1-23(2,3)32-22(31)27-8-9-28-19(12-27)20(29)26-18-7-4-13(10-16(18)21(28)30)15-6-5-14(24)11-17(15)25/h4-7,10-11,19H,8-9,12H2,1-3H3,(H,26,29)/t19-/m1/s1" 
Y8U InChIKey         InChI                1.06  BUYGMXFBMPEQNR-LJQANCHMSA-N                                                                                                                                                     
Y8U SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)N1CCN2[C@H](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(Cl)cc4F"                                                                                                                
Y8U SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)N1CCN2[CH](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(Cl)cc4F"                                                                                                                 
Y8U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCN2[C@H](C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(cc4F)Cl"                                                                                                                
Y8U SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCN2C(C1)C(=O)Nc3ccc(cc3C2=O)c4ccc(cc4F)Cl"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y8U "SYSTEMATIC NAME" ACDLabs              12.01 "tert-butyl (5S,8M,12aR)-8-(4-chloro-2-fluorophenyl)-6,12-dioxo-3,4,6,11,12,12a-hexahydropyrazino[2,1-c][1,4]benzodiazepine-2(1H)-carboxylate"                       
Y8U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl (4~{a}~{R})-9-(4-chloranyl-2-fluoranyl-phenyl)-5,11-bis(oxidanylidene)-2,4,4~{a},6-tetrahydro-1~{H}-pyrazino[2,1-c][1,4]benzodiazepine-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y8U "Create component" 2023-06-12 RCSB 
Y8U "Initial release"  2024-12-18 RCSB 
# 
