data_YD0
# 
_chem_comp.id                                    YD0 
_chem_comp.name                                  "(2E)-1-[(3aR,8aS)-2-(1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 F3 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.517 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YD0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YD0 C01 C1  C 0 1 N N N N N N -13.319 9.524  47.345 -0.503 0.897  1.725  C01 YD0 1  
YD0 C02 C2  C 0 1 N N N N N N -12.815 10.734 48.027 0.166  -0.256 1.039  C02 YD0 2  
YD0 N03 N1  N 0 1 N N N N N N -14.549 9.112  47.775 -0.370 2.154  1.000  N03 YD0 3  
YD0 C04 C3  C 0 1 N N N N N N -15.352 9.616  48.738 0.879  2.880  0.979  C04 YD0 4  
YD0 C05 C4  C 0 1 N N N N N N -15.995 10.912 48.478 1.959  2.042  0.324  C05 YD0 5  
YD0 C06 C5  C 0 1 N N R N N N -13.582 12.013 47.845 1.648  -0.343 1.178  C06 YD0 6  
YD0 C07 C6  C 0 1 N N S N N N -14.956 12.190 48.474 2.481  0.917  1.162  C07 YD0 7  
YD0 N09 N2  N 0 1 N N N N N N -14.893 13.363 46.432 3.747  -0.971 0.300  N09 YD0 8  
YD0 C10 C7  C 0 1 N N N N N N -13.931 12.146 46.413 2.300  -1.243 0.106  C10 YD0 9  
YD0 C13 C8  C 0 1 N N N N N N -15.097 7.904  47.115 -1.433 2.649  0.335  C13 YD0 10 
YD0 C16 C9  C 0 1 N N N N N N -14.525 5.807  45.749 -3.697 2.320  -0.502 C16 YD0 11 
YD0 C17 C10 C 0 1 Y N N N N N -13.458 5.070  44.933 -4.938 1.537  -0.591 C17 YD0 12 
YD0 C18 C11 C 0 1 Y N N N N N -12.494 5.820  44.280 -6.007 2.001  -1.366 C18 YD0 13 
YD0 C19 C12 C 0 1 Y N N N N N -11.519 5.173  43.531 -7.167 1.264  -1.447 C19 YD0 14 
YD0 C20 C13 C 0 1 Y N N N N N -11.524 3.777  43.449 -7.278 0.061  -0.760 C20 YD0 15 
YD0 C21 C14 C 0 1 Y N N N N N -12.484 3.020  44.112 -6.219 -0.405 0.012  C21 YD0 16 
YD0 C22 C15 C 0 1 Y N N N N N -13.470 3.673  44.860 -5.052 0.322  0.094  C22 YD0 17 
YD0 C24 C16 C 0 1 N N N N N N -10.702 2.334  41.650 -8.470 -1.890 -0.112 C24 YD0 18 
YD0 C28 C17 C 0 1 N N N N N N -15.292 14.385 45.398 4.757  -1.860 0.218  C28 YD0 19 
YD0 C08 C18 C 0 1 N N N N N N -15.427 13.428 47.814 3.855  0.470  0.599  C08 YD0 20 
YD0 C14 C19 C 0 1 N N N N N N -14.312 7.174  46.012 -2.668 1.870  0.246  C14 YD0 21 
YD0 O15 O1  O 0 1 N N N N N N -16.189 7.459  47.442 -1.365 3.744  -0.192 O15 YD0 22 
YD0 O23 O2  O 0 1 N N N N N N -10.508 3.192  42.704 -8.424 -0.662 -0.842 O23 YD0 23 
YD0 F25 F1  F 0 1 N N N N N N -9.771  1.385  41.793 -8.288 -1.628 1.250  F25 YD0 24 
YD0 F26 F2  F 0 1 N N N N N N -11.911 1.797  41.634 -9.713 -2.501 -0.307 F26 YD0 25 
YD0 F27 F3  F 0 1 N N N N N N -10.535 3.019  40.532 -7.456 -2.740 -0.563 F27 YD0 26 
YD0 N29 N3  N 0 1 N N N N N N -14.853 14.521 43.976 6.029  -1.454 0.405  N29 YD0 27 
YD0 O30 O3  O 0 1 N N N N N N -16.081 15.220 45.817 4.521  -3.027 -0.023 O30 YD0 28 
YD0 C31 C20 C 0 1 N N N N N N -13.951 13.583 43.367 7.120  -2.430 0.536  C31 YD0 29 
YD0 C32 C21 C 0 1 N N N N N N -14.394 12.930 42.180 8.082  -2.273 -0.647 C32 YD0 30 
YD0 C33 C22 C 0 1 N N N N N N -15.315 15.480 43.105 6.361  -0.019 0.475  C33 YD0 31 
YD0 C34 C23 C 0 1 Y N N N N N -16.208 14.788 42.018 7.597  0.195  -0.365 C34 YD0 32 
YD0 C35 C24 C 0 1 Y N N N N N -15.710 13.446 41.558 8.360  -0.806 -0.856 C35 YD0 33 
YD0 N36 N4  N 0 1 Y N N N N N -16.592 12.972 40.637 9.371  -0.249 -1.545 N36 YD0 34 
YD0 N37 N5  N 0 1 Y N N N N N -17.662 13.955 40.486 9.223  1.145  -1.475 N37 YD0 35 
YD0 C38 C25 C 0 1 Y N N N N N -17.388 15.061 41.364 8.159  1.402  -0.771 C38 YD0 36 
YD0 H40 H1  H 0 1 N N N N N N -13.383 9.736  46.268 -1.563 0.669  1.839  H40 YD0 37 
YD0 H39 H2  H 0 1 N N N N N N -12.602 8.707  47.516 -0.065 1.017  2.716  H39 YD0 38 
YD0 H41 H3  H 0 1 N N N N N N -12.791 10.517 49.105 -0.265 -1.178 1.431  H41 YD0 39 
YD0 H42 H4  H 0 1 N N N N N N -11.791 10.911 47.666 -0.071 -0.200 -0.023 H42 YD0 40 
YD0 H44 H5  H 0 1 N N N N N N -16.151 8.882  48.917 0.750  3.806  0.419  H44 YD0 41 
YD0 H43 H6  H 0 1 N N N N N N -14.745 9.727  49.648 1.176  3.117  2.001  H43 YD0 42 
YD0 H46 H7  H 0 1 N N N N N N -16.486 10.863 47.495 1.557  1.625  -0.600 H46 YD0 43 
YD0 H45 H8  H 0 1 N N N N N N -16.752 11.085 49.257 2.793  2.695  0.067  H45 YD0 44 
YD0 H12 H9  H 0 1 N N N N N N -12.945 12.858 48.144 1.847  -0.834 2.131  H12 YD0 45 
YD0 H11 H10 H 0 1 N N N N N N -14.788 12.432 49.534 2.622  1.267  2.185  H11 YD0 46 
YD0 H50 H11 H 0 1 N N N N N N -13.040 12.349 45.801 2.076  -2.293 0.294  H50 YD0 47 
YD0 H49 H12 H 0 1 N N N N N N -14.435 11.243 46.038 1.981  -0.950 -0.893 H49 YD0 48 
YD0 H52 H13 H 0 1 N N N N N N -15.407 5.298  46.109 -3.609 3.255  -1.035 H52 YD0 49 
YD0 H53 H14 H 0 1 N N N N N N -12.500 6.898  44.352 -5.923 2.937  -1.900 H53 YD0 50 
YD0 H54 H15 H 0 1 N N N N N N -10.762 5.745  43.015 -7.992 1.622  -2.045 H54 YD0 51 
YD0 H55 H16 H 0 1 N N N N N N -12.469 1.942  44.050 -6.310 -1.340 0.544  H55 YD0 52 
YD0 H56 H17 H 0 1 N N N N N N -14.231 3.105  45.375 -4.229 -0.043 0.689  H56 YD0 53 
YD0 H48 H18 H 0 1 N N N N N N -16.526 13.463 47.801 4.082  1.023  -0.312 H48 YD0 54 
YD0 H47 H19 H 0 1 N N N N N N -15.038 14.315 48.336 4.635  0.638  1.342  H47 YD0 55 
YD0 H51 H20 H 0 1 N N N N N N -13.585 7.719  45.429 -2.756 0.935  0.779  H51 YD0 56 
YD0 H58 H21 H 0 1 N N N N N N -13.026 14.125 43.121 7.656  -2.253 1.469  H58 YD0 57 
YD0 H57 H22 H 0 1 N N N N N N -13.732 12.803 44.111 6.707  -3.439 0.539  H57 YD0 58 
YD0 H60 H23 H 0 1 N N N N N N -13.602 13.038 41.424 9.015  -2.794 -0.431 H60 YD0 59 
YD0 H59 H24 H 0 1 N N N N N N -14.532 11.865 42.417 7.628  -2.691 -1.546 H59 YD0 60 
YD0 H61 H25 H 0 1 N N N N N N -15.911 16.223 43.655 5.536  0.573  0.078  H61 YD0 61 
YD0 H62 H26 H 0 1 N N N N N N -14.464 15.980 42.620 6.559  0.266  1.508  H62 YD0 62 
YD0 H63 H27 H 0 1 N N N N N N -16.520 12.102 40.149 10.077 -0.725 -2.008 H63 YD0 63 
YD0 H64 H28 H 0 1 N N N N N N -17.997 15.944 41.488 7.780  2.388  -0.542 H64 YD0 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YD0 C01 C02 SING N N 1  
YD0 C01 N03 SING N N 2  
YD0 N03 C04 SING N N 3  
YD0 C04 C05 SING N N 4  
YD0 C02 C06 SING N N 5  
YD0 C05 C07 SING N N 6  
YD0 C06 C07 SING N N 7  
YD0 C07 C08 SING N N 8  
YD0 C08 N09 SING N N 9  
YD0 C06 C10 SING N N 10 
YD0 N09 C10 SING N N 11 
YD0 N03 C13 SING N N 12 
YD0 C13 C14 SING N N 13 
YD0 C13 O15 DOUB N N 14 
YD0 C14 C16 DOUB N E 15 
YD0 C16 C17 SING N N 16 
YD0 C17 C18 DOUB Y N 17 
YD0 C18 C19 SING Y N 18 
YD0 C19 C20 DOUB Y N 19 
YD0 C20 C21 SING Y N 20 
YD0 C17 C22 SING Y N 21 
YD0 C21 C22 DOUB Y N 22 
YD0 C20 O23 SING N N 23 
YD0 O23 C24 SING N N 24 
YD0 C24 F25 SING N N 25 
YD0 C24 F26 SING N N 26 
YD0 C24 F27 SING N N 27 
YD0 N09 C28 SING N N 28 
YD0 C28 N29 SING N N 29 
YD0 C28 O30 DOUB N N 30 
YD0 N29 C31 SING N N 31 
YD0 C31 C32 SING N N 32 
YD0 N29 C33 SING N N 33 
YD0 C33 C34 SING N N 34 
YD0 C32 C35 SING N N 35 
YD0 C34 C35 DOUB Y N 36 
YD0 C35 N36 SING Y N 37 
YD0 N36 N37 SING Y N 38 
YD0 C34 C38 SING Y N 39 
YD0 N37 C38 DOUB Y N 40 
YD0 C01 H40 SING N N 41 
YD0 C01 H39 SING N N 42 
YD0 C02 H41 SING N N 43 
YD0 C02 H42 SING N N 44 
YD0 C04 H44 SING N N 45 
YD0 C04 H43 SING N N 46 
YD0 C05 H46 SING N N 47 
YD0 C05 H45 SING N N 48 
YD0 C06 H12 SING N N 49 
YD0 C07 H11 SING N N 50 
YD0 C10 H50 SING N N 51 
YD0 C10 H49 SING N N 52 
YD0 C16 H52 SING N N 53 
YD0 C18 H53 SING N N 54 
YD0 C19 H54 SING N N 55 
YD0 C21 H55 SING N N 56 
YD0 C22 H56 SING N N 57 
YD0 C08 H48 SING N N 58 
YD0 C08 H47 SING N N 59 
YD0 C14 H51 SING N N 60 
YD0 C31 H58 SING N N 61 
YD0 C31 H57 SING N N 62 
YD0 C32 H60 SING N N 63 
YD0 C32 H59 SING N N 64 
YD0 C33 H61 SING N N 65 
YD0 C33 H62 SING N N 66 
YD0 N36 H63 SING N N 67 
YD0 C38 H64 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YD0 SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CCC2CN(CC2CC1)C(=O)N1CCc2[NH]ncc2C1"                                                                                                             
YD0 InChI            InChI                1.06  "InChI=1S/C25H28F3N5O3/c26-25(27,28)36-21-4-1-17(2-5-21)3-6-23(34)31-10-7-18-14-33(15-19(18)8-11-31)24(35)32-12-9-22-20(16-32)13-29-30-22/h1-6,13,18-19H,7-12,14-16H2,(H,29,30)" 
YD0 InChIKey         InChI                1.06  MPHFCBRUZUBYDX-UHFFFAOYSA-N                                                                                                                                                      
YD0 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2CC[C@H]3CN(C[C@H]3CC2)C(=O)N4CCc5[nH]ncc5C4)cc1"                                                                                                     
YD0 SMILES           CACTVS               3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)N4CCc5[nH]ncc5C4)cc1"                                                                                                         
YD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)N4CCc5c(cn[nH]5)C4)OC(F)(F)F"                                                                                                 
YD0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CCC3CN(CC3CC2)C(=O)N4CCc5c(cn[nH]5)C4)OC(F)(F)F"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YD0 "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-1-[(3aR,8aS)-2-(1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one"                                   
YD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{S},8~{a}~{R})-2-(1,4,6,7-tetrahydropyrazolo[4,3-c]pyridin-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YD0 "Create component" 2023-06-13 RCSB 
YD0 "Initial release"  2024-12-18 RCSB 
# 
