data_YDE
# 
_chem_comp.id                                    YDE 
_chem_comp.name                                  "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]{4-[(propan-2-yl)oxy]-7-(trifluoromethyl)quinolin-2-yl}methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H27 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.558 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDE N1  N1  N 0 1 N N N N N N -14.015 9.075  48.162 0.634  -1.974 0.588  N1  YDE 1  
YDE C2  C1  C 0 1 N N N N N N -14.673 9.791  49.279 -0.584 -2.778 0.741  C2  YDE 2  
YDE C3  C2  C 0 1 N N S N N N -13.573 10.663 49.922 -1.762 -1.886 0.311  C3  YDE 3  
YDE C4  C3  C 0 1 N N R N N N -12.238 10.000 49.459 -1.259 -0.450 0.602  C4  YDE 4  
YDE C5  C4  C 0 1 N N N N N N -12.572 9.041  48.329 0.273  -0.555 0.517  C5  YDE 5  
YDE C6  C5  C 0 1 N N S N N N -13.157 11.942 49.168 -1.743 -1.510 -1.176 C6  YDE 6  
YDE C7  C6  C 0 1 N N R N N N -11.785 11.313 48.800 -1.913 -0.038 -0.728 C7  YDE 7  
YDE C8  C7  C 0 1 N N N N N N -12.744 13.128 50.072 -3.058 -1.822 -1.912 C8  YDE 8  
YDE N9  N2  N 0 1 N N N N N N -11.421 12.792 50.625 -4.084 -0.947 -1.332 N9  YDE 9  
YDE C10 C8  C 0 1 N N N N N N -10.712 12.041 49.614 -3.435 0.158  -0.620 C10 YDE 10 
YDE C15 C9  C 0 1 N N N N N N -14.619 8.465  47.129 1.888  -2.463 0.527  C15 YDE 11 
YDE O16 O1  O 0 1 N N N N N N -15.836 8.517  47.079 2.078  -3.661 0.601  O16 YDE 12 
YDE C17 C10 C 0 1 N N N N N N -10.963 13.143 51.865 -5.415 -1.130 -1.438 C17 YDE 13 
YDE C18 C11 C 0 1 Y N N N N N -9.630  12.779 52.467 -6.344 -0.236 -0.717 C18 YDE 14 
YDE O19 O2  O 0 1 N N N N N N -11.737 13.785 52.561 -5.852 -2.032 -2.128 O19 YDE 15 
YDE C20 C12 C 0 1 Y N N N N N -9.437  11.456 52.857 -6.120 1.148  -0.715 C20 YDE 16 
YDE C21 C13 C 0 1 Y N N N N N -8.277  11.011 53.428 -6.969 1.984  -0.053 C21 YDE 17 
YDE C22 C14 C 0 1 Y N N N N N -8.601  13.704 52.723 -7.439 -0.770 -0.048 C22 YDE 18 
YDE C23 C15 C 0 1 Y N N N N N -7.391  13.262 53.329 -8.313 0.082  0.632  C23 YDE 19 
YDE C24 C16 C 0 1 Y N N N N N -7.238  11.896 53.686 -8.068 1.468  0.629  C24 YDE 20 
YDE N25 N3  N 0 1 Y N N N N N -5.985  11.739 54.250 -9.077 2.034  1.368  N25 YDE 21 
YDE N26 N4  N 0 1 Y N N N N N -5.420  13.010 54.222 -9.897 0.983  1.802  N26 YDE 22 
YDE N27 N5  N 0 1 Y N N N N N -6.244  13.868 53.690 -9.437 -0.133 1.357  N27 YDE 23 
YDE C28 C17 C 0 1 Y N N N N N -13.809 7.789  46.045 3.038  -1.539 0.370  C28 YDE 24 
YDE N29 N6  N 0 1 Y N N N N N -13.609 6.489  46.066 2.814  -0.241 0.292  N29 YDE 25 
YDE C30 C18 C 0 1 Y N N N N N -12.528 7.965  43.999 5.411  -1.210 0.170  C30 YDE 26 
YDE C31 C19 C 0 1 Y N N N N N -13.273 8.575  45.005 4.334  -2.064 0.315  C31 YDE 27 
YDE C32 C20 C 0 1 Y N N N N N -12.327 6.594  44.054 5.152  0.176  0.082  C32 YDE 28 
YDE C33 C21 C 0 1 Y N N N N N -12.877 5.873  45.129 3.812  0.633  0.151  C33 YDE 29 
YDE C34 C22 C 0 1 Y N N N N N -12.654 4.483  45.181 3.556  2.015  0.068  C34 YDE 30 
YDE C35 C23 C 0 1 Y N N N N N -11.942 3.902  44.187 4.591  2.886  -0.076 C35 YDE 31 
YDE C36 C24 C 0 1 Y N N N N N -11.392 4.623  43.128 5.908  2.433  -0.144 C36 YDE 32 
YDE C37 C25 C 0 1 Y N N N N N -11.588 5.967  43.054 6.194  1.103  -0.067 C37 YDE 33 
YDE O38 O3  O 0 1 N N N N N N -12.005 8.612  42.924 6.678  -1.689 0.109  O38 YDE 34 
YDE C39 C26 C 0 1 N N N N N N -12.274 10.010 42.717 6.834  -3.109 0.080  C39 YDE 35 
YDE C40 C27 C 0 1 N N N N N N -11.305 10.780 43.598 8.075  -3.469 -0.740 C40 YDE 36 
YDE C41 C28 C 0 1 N N N N N N -12.092 10.403 41.241 6.997  -3.633 1.508  C41 YDE 37 
YDE C42 C29 C 0 1 N N N N N N -11.724 2.421  44.251 4.310  4.364  -0.165 C42 YDE 38 
YDE F43 F1  F 0 1 N N N N N N -10.379 2.225  44.548 4.324  4.919  1.119  F43 YDE 39 
YDE F44 F2  F 0 1 N N N N N N -12.584 1.833  45.214 5.292  4.978  -0.949 F44 YDE 40 
YDE F45 F3  F 0 1 N N N N N N -11.950 1.867  42.989 3.055  4.565  -0.748 F45 YDE 41 
YDE H47 H1  H 0 1 N N N N N N -15.491 10.422 48.901 -0.532 -3.660 0.101  H47 YDE 42 
YDE H46 H2  H 0 1 N N N N N N -15.072 9.074  50.012 -0.704 -3.079 1.782  H46 YDE 43 
YDE H12 H3  H 0 1 N N N N N N -13.664 10.783 51.012 -2.727 -2.161 0.736  H12 YDE 44 
YDE H11 H4  H 0 1 N N N N N N -11.593 9.610  50.261 -1.639 0.027  1.505  H11 YDE 45 
YDE H48 H5  H 0 1 N N N N N N -12.245 8.023  48.587 0.725  -0.017 1.350  H48 YDE 46 
YDE H49 H6  H 0 1 N N N N N N -12.076 9.362  47.401 0.619  -0.133 -0.427 H49 YDE 47 
YDE H14 H7  H 0 1 N N N N N N -13.792 12.208 48.310 -0.829 -1.753 -1.719 H14 YDE 48 
YDE H13 H8  H 0 1 N N N N N N -11.585 11.246 47.720 -1.380 0.714  -1.310 H13 YDE 49 
YDE H51 H9  H 0 1 N N N N N N -12.685 14.054 49.481 -2.949 -1.614 -2.976 H51 YDE 50 
YDE H50 H10 H 0 1 N N N N N N -13.474 13.258 50.885 -3.331 -2.867 -1.762 H50 YDE 51 
YDE H52 H11 H 0 1 N N N N N N -10.031 11.316 50.084 -3.734 0.148  0.428  H52 YDE 52 
YDE H53 H12 H 0 1 N N N N N N -10.136 12.719 48.967 -3.717 1.107  -1.075 H53 YDE 53 
YDE H54 H13 H 0 1 N N N N N N -10.239 10.750 52.701 -5.269 1.554  -1.241 H54 YDE 54 
YDE H55 H14 H 0 1 N N N N N N -8.168  9.966  53.680 -6.788 3.049  -0.056 H55 YDE 55 
YDE H56 H15 H 0 1 N N N N N N -8.729  14.744 52.461 -7.613 -1.835 -0.055 H56 YDE 56 
YDE H57 H16 H 0 1 N N N N N N -5.575  10.897 54.601 -9.199 2.978  1.555  H57 YDE 57 
YDE H58 H17 H 0 1 N N N N N N -13.439 9.642  44.988 4.491  -3.130 0.387  H58 YDE 58 
YDE H59 H18 H 0 1 N N N N N N -13.043 3.893  45.997 2.542  2.383  0.118  H59 YDE 59 
YDE H60 H19 H 0 1 N N N N N N -10.813 4.117  42.370 6.711  3.145  -0.258 H60 YDE 60 
YDE H61 H20 H 0 1 N N N N N N -11.178 6.538  42.234 7.219  0.765  -0.115 H61 YDE 61 
YDE H62 H21 H 0 1 N N N N N N -13.304 10.247 43.023 5.954  -3.562 -0.376 H62 YDE 62 
YDE H63 H22 H 0 1 N N N N N N -11.474 11.860 43.473 8.956  -3.016 -0.284 H63 YDE 63 
YDE H65 H23 H 0 1 N N N N N N -11.467 10.503 44.650 8.194  -4.552 -0.762 H65 YDE 64 
YDE H64 H24 H 0 1 N N N N N N -10.272 10.534 43.309 7.960  -3.096 -1.757 H64 YDE 65 
YDE H66 H25 H 0 1 N N N N N N -12.305 11.475 41.118 7.116  -4.717 1.486  H66 YDE 66 
YDE H68 H26 H 0 1 N N N N N N -11.057 10.197 40.932 7.877  -3.180 1.964  H68 YDE 67 
YDE H67 H27 H 0 1 N N N N N N -12.784 9.818  40.618 6.113  -3.377 2.092  H67 YDE 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDE N1  C2  SING N N 1  
YDE N1  C5  SING N N 2  
YDE N1  C15 SING N N 3  
YDE C2  C3  SING N N 4  
YDE C3  C4  SING N N 5  
YDE C3  C6  SING N N 6  
YDE C4  C5  SING N N 7  
YDE C4  C7  SING N N 8  
YDE C6  C7  SING N N 9  
YDE C6  C8  SING N N 10 
YDE C7  C10 SING N N 11 
YDE C8  N9  SING N N 12 
YDE N9  C10 SING N N 13 
YDE N9  C17 SING N N 14 
YDE C15 O16 DOUB N N 15 
YDE C15 C28 SING N N 16 
YDE C17 C18 SING N N 17 
YDE C17 O19 DOUB N N 18 
YDE C18 C20 DOUB Y N 19 
YDE C18 C22 SING Y N 20 
YDE C20 C21 SING Y N 21 
YDE C21 C24 DOUB Y N 22 
YDE C22 C23 DOUB Y N 23 
YDE C23 C24 SING Y N 24 
YDE C23 N27 SING Y N 25 
YDE C24 N25 SING Y N 26 
YDE N25 N26 SING Y N 27 
YDE N26 N27 DOUB Y N 28 
YDE C28 N29 DOUB Y N 29 
YDE C28 C31 SING Y N 30 
YDE N29 C33 SING Y N 31 
YDE C30 C32 SING Y N 32 
YDE C30 C31 DOUB Y N 33 
YDE C30 O38 SING N N 34 
YDE C32 C33 DOUB Y N 35 
YDE C32 C37 SING Y N 36 
YDE C33 C34 SING Y N 37 
YDE C34 C35 DOUB Y N 38 
YDE C35 C36 SING Y N 39 
YDE C35 C42 SING N N 40 
YDE C36 C37 DOUB Y N 41 
YDE O38 C39 SING N N 42 
YDE C39 C40 SING N N 43 
YDE C39 C41 SING N N 44 
YDE C42 F43 SING N N 45 
YDE C42 F44 SING N N 46 
YDE C42 F45 SING N N 47 
YDE C2  H47 SING N N 48 
YDE C2  H46 SING N N 49 
YDE C3  H12 SING N N 50 
YDE C4  H11 SING N N 51 
YDE C5  H48 SING N N 52 
YDE C5  H49 SING N N 53 
YDE C6  H14 SING N N 54 
YDE C7  H13 SING N N 55 
YDE C8  H51 SING N N 56 
YDE C8  H50 SING N N 57 
YDE C10 H52 SING N N 58 
YDE C10 H53 SING N N 59 
YDE C20 H54 SING N N 60 
YDE C21 H55 SING N N 61 
YDE C22 H56 SING N N 62 
YDE N25 H57 SING N N 63 
YDE C31 H58 SING N N 64 
YDE C34 H59 SING N N 65 
YDE C36 H60 SING N N 66 
YDE C37 H61 SING N N 67 
YDE C39 H62 SING N N 68 
YDE C40 H63 SING N N 69 
YDE C40 H65 SING N N 70 
YDE C40 H64 SING N N 71 
YDE C41 H66 SING N N 72 
YDE C41 H68 SING N N 73 
YDE C41 H67 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDE SMILES           ACDLabs              12.01 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                            
YDE InChI            InChI                1.06  "InChI=1S/C29H27F3N6O3/c1-14(2)41-26-9-25(33-23-8-16(29(30,31)32)4-5-17(23)26)28(40)38-12-20-18-10-37(11-19(18)21(20)13-38)27(39)15-3-6-22-24(7-15)35-36-34-22/h3-9,14,18-21H,10-13H2,1-2H3,(H,34,35,36)" 
YDE InChIKey         InChI                1.06  GVYBHYZYCAAHJJ-UHFFFAOYSA-N                                                                                                                                                                               
YDE SMILES_CANONICAL CACTVS               3.385 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N3C[C@@H]4[C@H]5CN(C[C@H]5[C@@H]4C3)C(=O)c6ccc7[nH]nnc7c6"                                                                                                          
YDE SMILES           CACTVS               3.385 "CC(C)Oc1cc(nc2cc(ccc12)C(F)(F)F)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6"                                                                                                                
YDE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1cc(nc2c1ccc(c2)C(F)(F)F)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                                        
YDE SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1cc(nc2c1ccc(c2)C(F)(F)F)C(=O)N3CC4C5CN(CC5C4C3)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YDE "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl]{4-[(propan-2-yl)oxy]-7-(trifluoromethyl)quinolin-2-yl}methanone"  
YDE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{S},6~{R},7~{S})-9-[4-propan-2-yloxy-7-(trifluoromethyl)quinolin-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDE "Create component" 2023-06-13 RCSB 
YDE "Initial release"  2024-12-18 RCSB 
# 
