data_YDV
# 
_chem_comp.id                                    YDV 
_chem_comp.name                                  "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H23 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G64 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDV C11 C1  C 0 1 N N N N N N -10.447 13.108 52.516 5.258  1.462  0.127  C11 YDV 1  
YDV C15 C2  C 0 1 Y N N N N N -8.003  10.937 54.339 5.243  -2.263 0.525  C15 YDV 2  
YDV C16 C3  C 0 1 Y N N N N N -8.044  13.635 53.247 7.023  -0.246 -0.228 C16 YDV 3  
YDV C17 C4  C 0 1 Y N N N N N -6.897  13.109 53.918 7.448  -1.577 -0.225 C17 YDV 4  
YDV C18 C5  C 0 1 Y N N N N N -6.898  11.763 54.444 6.546  -2.589 0.156  C18 YDV 5  
YDV C22 C6  C 0 1 N N N N N N -13.995 9.529  47.689 -1.679 3.014  0.074  C22 YDV 6  
YDV C23 C7  C 0 1 Y N N N N N -13.354 8.491  46.861 -2.690 1.939  0.074  C23 YDV 7  
YDV C25 C8  C 0 1 Y N N N N N -12.585 8.758  45.702 -2.310 0.603  0.269  C25 YDV 8  
YDV C26 C9  C 0 1 Y N N N N N -12.077 7.695  44.967 -3.292 -0.366 0.262  C26 YDV 9  
YDV C27 C10 C 0 1 Y N N N N N -12.377 6.446  45.445 -4.617 0.009  0.062  C27 YDV 10 
YDV N1  N1  N 0 1 N N N N N N -11.176 12.251 51.704 3.953  1.744  -0.056 N1  YDV 11 
YDV C2  C11 C 0 1 N N N N N N -10.698 11.060 51.016 3.358  3.110  -0.202 C2  YDV 12 
YDV C3  C12 C 0 1 N N N N N N -12.569 12.478 51.328 2.842  0.750  -0.154 C3  YDV 13 
YDV C4  C13 C 0 1 N N S N N N -12.902 11.107 50.751 1.643  1.561  -0.525 C4  YDV 14 
YDV C5  C14 C 0 1 N N S N N N -11.640 11.132 49.814 1.935  2.896  0.270  C5  YDV 15 
YDV C6  C15 C 0 1 N N N N N N -11.997 9.794  49.172 0.748  3.694  -0.224 C6  YDV 16 
YDV N7  N2  N 0 1 N N N N N N -13.365 10.083 48.759 -0.375 2.712  -0.092 N7  YDV 17 
YDV C8  C16 C 0 1 N N N N N N -13.944 11.098 49.633 0.207  1.340  -0.176 C8  YDV 18 
YDV C12 C17 C 0 1 Y N N N N N -9.147  12.726 53.160 5.716  0.057  0.133  C12 YDV 19 
YDV O13 O1  O 0 1 N N N N N N -10.935 14.209 52.670 6.060  2.363  0.280  O13 YDV 20 
YDV C14 C18 C 0 1 Y N N N N N -9.113  11.432 53.717 4.834  -0.963 0.515  C14 YDV 21 
YDV N19 N3  N 0 1 Y N N N N N -5.635  11.570 55.020 7.238  -3.770 0.061  N19 YDV 22 
YDV N20 N4  N 0 1 Y N N N N N -4.945  12.690 54.868 8.532  -3.446 -0.371 N20 YDV 23 
YDV N21 N5  N 0 1 Y N N N N N -5.620  13.637 54.230 8.626  -2.172 -0.529 N21 YDV 24 
YDV O24 O2  O 0 1 N N N N N N -15.146 9.867  47.414 -2.021 4.171  0.222  O24 YDV 25 
YDV N28 N6  N 0 1 Y N N N N N -13.099 6.169  46.542 -4.944 1.280  -0.119 N28 YDV 26 
YDV C29 C19 C 0 1 Y N N N N N -13.590 7.194  47.229 -4.041 2.237  -0.113 C29 YDV 27 
YDV O30 O3  O 0 1 N N N N N N -11.833 5.454  44.706 -5.585 -0.938 0.054  O30 YDV 28 
YDV C31 C20 C 0 1 N N N N N N -11.224 7.821  43.750 -2.934 -1.816 0.466  C31 YDV 29 
YDV C32 C21 C 0 1 N N N N N N -11.987 4.107  45.152 -6.927 -0.492 -0.155 C32 YDV 30 
YDV C33 C22 C 0 1 N N N N N N -11.126 3.244  44.283 -7.873 -1.694 -0.133 C33 YDV 31 
YDV F34 F1  F 0 1 N N N N N N -10.294 2.518  45.035 -7.782 -2.336 1.107  F34 YDV 32 
YDV F35 F2  F 0 1 N N N N N N -11.846 2.377  43.593 -9.186 -1.258 -0.338 F35 YDV 33 
YDV F36 F3  F 0 1 N N N N N N -10.382 3.925  43.354 -7.515 -2.588 -1.148 F36 YDV 34 
YDV C37 C23 C 0 1 N N N N N N -11.884 8.224  42.456 -1.974 -2.455 -0.540 C37 YDV 35 
YDV C38 C24 C 0 1 N N N N N N -10.940 9.162  43.119 -1.495 -2.136 0.878  C38 YDV 36 
YDV H48 H1  H 0 1 N N N N N N -7.988  9.933  54.736 4.555  -3.043 0.816  H48 YDV 37 
YDV H49 H2  H 0 1 N N N N N N -8.076  14.635 52.840 7.703  0.541  -0.518 H49 YDV 38 
YDV H51 H3  H 0 1 N N N N N N -12.396 9.776  45.394 -1.273 0.340  0.421  H51 YDV 39 
YDV H40 H4  H 0 1 N N N N N N -9.640  11.141 50.725 3.874  3.828  0.435  H40 YDV 40 
YDV H39 H5  H 0 1 N N N N N N -10.846 10.146 51.610 3.376  3.431  -1.243 H39 YDV 41 
YDV H41 H6  H 0 1 N N N N N N -13.195 12.719 52.200 3.059  0.014  -0.928 H41 YDV 42 
YDV H42 H7  H 0 1 N N N N N N -12.666 13.274 50.575 2.686  0.258  0.806  H42 YDV 43 
YDV H10 H8  H 0 1 N N N N N N -12.946 10.272 51.466 1.698  1.794  -1.589 H10 YDV 44 
YDV H9  H9  H 0 1 N N N N N N -11.541 12.002 49.148 1.897  2.742  1.349  H9  YDV 45 
YDV H44 H10 H 0 1 N N N N N N -11.349 9.565  48.313 0.576  4.565  0.408  H44 YDV 46 
YDV H43 H11 H 0 1 N N N N N N -11.953 8.967  49.896 0.884  3.988  -1.264 H43 YDV 47 
YDV H45 H12 H 0 1 N N N N N N -14.937 10.801 50.002 -0.289 0.763  -0.956 H45 YDV 48 
YDV H46 H13 H 0 1 N N N N N N -14.016 12.075 49.133 0.124  0.831  0.785  H46 YDV 49 
YDV H47 H14 H 0 1 N N N N N N -9.994  10.811 53.650 3.822  -0.717 0.803  H47 YDV 50 
YDV H50 H15 H 0 1 N N N N N N -5.312  10.735 55.466 6.898  -4.658 0.256  H50 YDV 51 
YDV H52 H16 H 0 1 N N N N N N -14.193 6.998  48.103 -4.347 3.262  -0.260 H52 YDV 52 
YDV H53 H17 H 0 1 N N N N N N -10.419 7.078  43.655 -3.726 -2.443 0.874  H53 YDV 53 
YDV H54 H18 H 0 1 N N N N N N -11.668 4.020  46.201 -7.206 0.204  0.635  H54 YDV 54 
YDV H55 H19 H 0 1 N N N N N N -13.039 3.799  45.062 -6.997 0.008  -1.121 H55 YDV 55 
YDV H57 H20 H 0 1 N N N N N N -11.597 7.729  41.516 -2.135 -3.503 -0.793 H57 YDV 56 
YDV H56 H21 H 0 1 N N N N N N -12.960 8.451  42.437 -1.602 -1.827 -1.349 H56 YDV 57 
YDV H58 H22 H 0 1 N N N N N N -11.319 10.081 43.589 -0.808 -1.299 1.001  H58 YDV 58 
YDV H59 H23 H 0 1 N N N N N N -9.956  9.359  42.669 -1.342 -2.975 1.558  H59 YDV 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDV N1  C2  SING N N 1  
YDV N1  C3  SING N N 2  
YDV N1  C11 SING N N 3  
YDV C2  C5  SING N N 4  
YDV C3  C4  SING N N 5  
YDV C4  C5  SING N N 6  
YDV C4  C8  SING N N 7  
YDV C5  C6  SING N N 8  
YDV C6  N7  SING N N 9  
YDV N7  C8  SING N N 10 
YDV N7  C22 SING N N 11 
YDV C11 C12 SING N N 12 
YDV C11 O13 DOUB N N 13 
YDV C12 C14 DOUB Y N 14 
YDV C12 C16 SING Y N 15 
YDV C14 C15 SING Y N 16 
YDV C15 C18 DOUB Y N 17 
YDV C16 C17 DOUB Y N 18 
YDV C17 C18 SING Y N 19 
YDV C17 N21 SING Y N 20 
YDV C18 N19 SING Y N 21 
YDV N19 N20 SING Y N 22 
YDV N20 N21 DOUB Y N 23 
YDV C22 C23 SING N N 24 
YDV C22 O24 DOUB N N 25 
YDV C23 C25 DOUB Y N 26 
YDV C23 C29 SING Y N 27 
YDV C25 C26 SING Y N 28 
YDV C26 C27 DOUB Y N 29 
YDV C26 C31 SING N N 30 
YDV C27 N28 SING Y N 31 
YDV C27 O30 SING N N 32 
YDV N28 C29 DOUB Y N 33 
YDV O30 C32 SING N N 34 
YDV C31 C37 SING N N 35 
YDV C31 C38 SING N N 36 
YDV C32 C33 SING N N 37 
YDV C33 F34 SING N N 38 
YDV C33 F35 SING N N 39 
YDV C33 F36 SING N N 40 
YDV C37 C38 SING N N 41 
YDV C15 H48 SING N N 42 
YDV C16 H49 SING N N 43 
YDV C25 H51 SING N N 44 
YDV C2  H40 SING N N 45 
YDV C2  H39 SING N N 46 
YDV C3  H41 SING N N 47 
YDV C3  H42 SING N N 48 
YDV C4  H10 SING N N 49 
YDV C5  H9  SING N N 50 
YDV C6  H44 SING N N 51 
YDV C6  H43 SING N N 52 
YDV C8  H45 SING N N 53 
YDV C8  H46 SING N N 54 
YDV C14 H47 SING N N 55 
YDV N19 H50 SING N N 56 
YDV C29 H52 SING N N 57 
YDV C31 H53 SING N N 58 
YDV C32 H54 SING N N 59 
YDV C32 H55 SING N N 60 
YDV C37 H57 SING N N 61 
YDV C37 H56 SING N N 62 
YDV C38 H58 SING N N 63 
YDV C38 H59 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDV SMILES           ACDLabs              12.01 "FC(F)(F)COc1ncc(cc1C1CC1)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                  
YDV InChI            InChI                1.06  "InChI=1S/C24H23F3N6O3/c25-24(26,27)12-36-21-18(13-1-2-13)5-15(7-28-21)23(35)33-10-16-8-32(9-17(16)11-33)22(34)14-3-4-19-20(6-14)30-31-29-19/h3-7,13,16-17H,1-2,8-12H2,(H,29,30,31)" 
YDV InChIKey         InChI                1.06  KZYHBUWLAUZDFH-UHFFFAOYSA-N                                                                                                                                                          
YDV SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                         
YDV SMILES           CACTVS               3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                            
YDV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@H]4CN(C[C@@H]4C3)C(=O)c5cc(c(nc5)OCC(F)(F)F)C6CC6)nn[nH]2"                                                                                                     
YDV SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CN(CC4C3)C(=O)c5cc(c(nc5)OCC(F)(F)F)C6CC6)nn[nH]2"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YDV "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone"                                         
YDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[5-cyclopropyl-6-[2,2,2-tris(fluoranyl)ethoxy]pyridin-3-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDV "Create component" 2023-06-13 RCSB 
YDV "Initial release"  2024-12-18 RCSB 
# 
