data_YE9
# 
_chem_comp.id                                    YE9 
_chem_comp.name                                  "[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl](3-hydroxy-4,7-dihydro[1,2]oxazolo[5,4-c]pyridin-6(5H)-yl)methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H39 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        565.661 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YE9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YE9 C10 C1  C 0 1 N N N N N N -12.665 9.272  47.921 1.300  2.401  1.363  C10 YE9 1  
YE9 C11 C2  C 0 1 N N N N N N -11.983 10.650 47.855 0.147  1.496  1.054  C11 YE9 2  
YE9 C13 C3  C 0 1 N N N N N N -11.378 12.283 49.765 -2.324 1.273  0.556  C13 YE9 3  
YE9 C15 C4  C 0 1 N N N N N N -14.656 8.711  46.641 2.574  3.280  -0.501 C15 YE9 4  
YE9 C16 C5  C 0 1 Y N N N N N -13.748 8.364  45.463 3.426  2.069  -0.436 C16 YE9 5  
YE9 C17 C6  C 0 1 Y N N N N N -13.117 9.387  44.713 4.819  2.165  -0.536 C17 YE9 6  
YE9 C18 C7  C 0 1 Y N N N N N -12.322 9.006  43.603 5.578  1.014  -0.471 C18 YE9 7  
YE9 C19 C8  C 0 1 N N N N N N -11.670 9.976  42.679 7.078  1.107  -0.577 C19 YE9 8  
YE9 C20 C9  C 0 1 N N N N N N -10.441 9.545  41.946 7.686  1.136  -1.981 C20 YE9 9  
YE9 C21 C10 C 0 1 N N N N N N -11.749 9.717  41.162 7.668  2.407  -1.130 C21 YE9 10 
YE9 C23 C11 C 0 1 Y N N N N N -12.740 6.760  43.968 3.698  -0.304 -0.218 C23 YE9 11 
YE9 C25 C12 C 0 1 N N N N N N -11.672 5.175  42.484 4.076  -2.640 -0.012 C25 YE9 12 
YE9 C26 C13 C 0 1 N N N N N N -11.621 3.636  42.360 3.296  -3.943 0.176  C26 YE9 13 
YE9 C27 C14 C 0 1 N N N N N N -10.906 3.337  41.031 4.258  -5.132 0.098  C27 YE9 14 
YE9 C28 C15 C 0 1 N N N N N N -11.105 1.837  40.771 3.482  -6.424 0.365  C28 YE9 15 
YE9 N1  N1  N 0 1 N N N N N N -10.040 12.800 52.384 -5.109 0.439  0.842  N1  YE9 16 
YE9 C2  C16 C 0 1 N N N N N N -11.526 12.776 52.244 -4.779 1.737  0.986  C2  YE9 17 
YE9 O3  O1  O 0 1 N N N N N N -12.284 13.130 53.174 -5.623 2.547  1.318  O3  YE9 18 
YE9 N4  N2  N 0 1 N N N N N N -12.178 12.391 51.014 -3.512 2.139  0.763  N4  YE9 19 
YE9 C5  C17 C 0 1 N N N N N N -13.522 12.784 50.618 -3.024 3.530  0.676  C5  YE9 20 
YE9 C6  C18 C 0 1 N N R N N N -13.800 11.924 49.396 -1.510 3.497  1.010  C6  YE9 21 
YE9 C7  C19 C 0 1 N N N N N N -14.359 10.586 49.936 -0.752 4.103  -0.130 C7  YE9 22 
YE9 C8  C20 C 0 1 N N N N N N -15.037 9.709  48.867 0.655  4.556  0.207  C8  YE9 23 
YE9 N9  N3  N 0 1 N N N N N N -14.111 9.312  47.715 1.528  3.413  0.339  N9  YE9 24 
YE9 C12 C21 C 0 1 N N S N N N -12.417 11.898 48.686 -1.217 2.045  1.306  C12 YE9 25 
YE9 N22 N4  N 0 1 Y N N N N N -12.149 7.727  43.237 5.010  -0.166 -0.317 N22 YE9 26 
YE9 O24 O2  O 0 1 N N N N N N -12.464 5.466  43.641 3.165  -1.541 -0.056 O24 YE9 27 
YE9 O29 O3  O 0 1 N N N N N N -10.238 1.190  41.713 2.848  -6.343 1.643  O29 YE9 28 
YE9 C30 C22 C 0 1 N N N N N N -10.280 1.543  43.133 1.903  -5.278 1.758  C30 YE9 29 
YE9 C31 C23 C 0 1 N N N N N N -10.727 3.027  43.443 2.615  -3.940 1.548  C31 YE9 30 
YE9 C32 C24 C 0 1 Y N N N N N -13.580 7.000  45.128 2.862  0.803  -0.268 C32 YE9 31 
YE9 O33 O4  O 0 1 N N N N N N -15.888 8.435  46.636 2.817  4.152  -1.311 O33 YE9 32 
YE9 C35 C25 C 0 1 N N N N N N -9.318  12.456 53.701 -4.141 -0.528 0.292  C35 YE9 33 
YE9 C36 C26 C 0 1 Y N N N N N -7.811  12.334 53.340 -4.883 -1.383 -0.704 C36 YE9 34 
YE9 C37 C27 C 0 1 Y N N N N N -7.204  12.705 52.132 -6.231 -1.384 -0.830 C37 YE9 35 
YE9 C38 C28 C 0 1 N N N N N N -7.928  13.454 51.072 -7.179 -0.550 -0.020 C38 YE9 36 
YE9 C39 C29 C 0 1 N N N N N N -9.284  13.936 51.698 -6.441 -0.045 1.236  C39 YE9 37 
YE9 C40 C30 C 0 1 Y N N N N N -5.821  12.241 52.251 -6.486 -2.313 -1.856 C40 YE9 38 
YE9 N41 N5  N 0 1 Y N N N N N -5.679  11.696 53.482 -5.314 -2.761 -2.234 N41 YE9 39 
YE9 O42 O5  O 0 1 Y N N N N N -6.864  11.755 54.112 -4.414 -2.248 -1.600 O42 YE9 40 
YE9 O43 O6  O 0 1 N N N N N N -4.866  12.275 51.253 -7.698 -2.671 -2.352 O43 YE9 41 
YE9 H50 H1  H 0 1 N N N N N N -12.469 8.837  48.912 1.108  2.901  2.312  H50 YE9 42 
YE9 H51 H2  H 0 1 N N N N N N -12.223 8.630  47.145 2.202  1.797  1.463  H51 YE9 43 
YE9 H52 H3  H 0 1 N N N N N N -10.931 10.471 48.120 0.209  1.217  0.002  H52 YE9 44 
YE9 H53 H4  H 0 1 N N N N N N -12.048 10.960 46.802 0.261  0.589  1.648  H53 YE9 45 
YE9 H54 H5  H 0 1 N N N N N N -10.900 13.244 49.522 -2.480 0.289  1.000  H54 YE9 46 
YE9 H55 H6  H 0 1 N N N N N N -10.607 11.504 49.861 -2.085 1.184  -0.503 H55 YE9 47 
YE9 H56 H7  H 0 1 N N N N N N -13.238 10.427 44.979 5.293  3.127  -0.662 H56 YE9 48 
YE9 H57 H8  H 0 1 N N N N N N -11.710 11.034 42.978 7.638  0.592  0.203  H57 YE9 49 
YE9 H59 H9  H 0 1 N N N N N N -9.616  10.257 41.796 8.646  0.640  -2.124 H59 YE9 50 
YE9 H58 H10 H 0 1 N N N N N N -10.031 8.538  42.111 7.001  1.087  -2.828 H58 YE9 51 
YE9 H61 H11 H 0 1 N N N N N N -12.285 8.837  40.776 6.970  3.194  -1.416 H61 YE9 52 
YE9 H60 H12 H 0 1 N N N N N N -11.870 10.556 40.461 8.615  2.747  -0.712 H60 YE9 53 
YE9 H63 H13 H 0 1 N N N N N N -12.135 5.613  41.587 4.766  -2.507 0.822  H63 YE9 54 
YE9 H62 H14 H 0 1 N N N N N N -10.657 5.580  42.607 4.638  -2.684 -0.945 H62 YE9 55 
YE9 H64 H15 H 0 1 N N N N N N -12.631 3.200  42.379 2.542  -4.032 -0.607 H64 YE9 56 
YE9 H66 H16 H 0 1 N N N N N N -11.350 3.928  40.217 4.706  -5.174 -0.895 H66 YE9 57 
YE9 H65 H17 H 0 1 N N N N N N -9.834  3.572  41.112 5.042  -5.016 0.847  H65 YE9 58 
YE9 H67 H18 H 0 1 N N N N N N -12.152 1.548  40.945 2.725  -6.560 -0.408 H67 YE9 59 
YE9 H68 H19 H 0 1 N N N N N N -10.820 1.580  39.740 4.169  -7.270 0.353  H68 YE9 60 
YE9 H44 H20 H 0 1 N N N N N N -14.245 12.573 51.420 -3.175 3.914  -0.333 H44 YE9 61 
YE9 H45 H21 H 0 1 N N N N N N -13.559 13.853 50.363 -3.551 4.155  1.396  H45 YE9 62 
YE9 H34 H22 H 0 1 N N N N N N -14.545 12.409 48.748 -1.330 4.081  1.912  H34 YE9 63 
YE9 H47 H23 H 0 1 N N N N N N -13.526 10.015 50.373 -0.693 3.368  -0.933 H47 YE9 64 
YE9 H46 H24 H 0 1 N N N N N N -15.099 10.812 50.718 -1.311 4.963  -0.497 H46 YE9 65 
YE9 H48 H25 H 0 1 N N N N N N -15.401 8.791  49.351 1.026  5.204  -0.587 H48 YE9 66 
YE9 H49 H26 H 0 1 N N N N N N -15.889 10.266 48.451 0.641  5.110  1.145  H49 YE9 67 
YE9 H14 H27 H 0 1 N N N N N N -12.433 12.736 47.974 -1.425 1.896  2.366  H14 YE9 68 
YE9 H69 H28 H 0 1 N N N N N N -10.986 0.863  43.632 1.125  -5.399 1.004  H69 YE9 69 
YE9 H70 H29 H 0 1 N N N N N N -9.273  1.396  43.550 1.452  -5.298 2.751  H70 YE9 70 
YE9 H72 H30 H 0 1 N N N N N N -9.825  3.649  43.540 3.365  -3.800 2.326  H72 YE9 71 
YE9 H71 H31 H 0 1 N N N N N N -11.280 3.032  44.394 1.888  -3.129 1.592  H71 YE9 72 
YE9 H73 H32 H 0 1 N N N N N N -14.040 6.201  45.690 1.792  0.687  -0.183 H73 YE9 73 
YE9 H74 H33 H 0 1 N N N N N N -9.471  13.255 54.441 -3.329 0.002  -0.206 H74 YE9 74 
YE9 H75 H34 H 0 1 N N N N N N -9.693  11.504 54.106 -3.743 -1.152 1.092  H75 YE9 75 
YE9 H76 H35 H 0 1 N N N N N N -7.333  14.320 50.747 -7.518 0.299  -0.613 H76 YE9 76 
YE9 H77 H36 H 0 1 N N N N N N -8.121  12.798 50.210 -8.034 -1.156 0.280  H77 YE9 77 
YE9 H79 H37 H 0 1 N N N N N N -9.916  14.350 50.898 -6.335 -0.860 1.952  H79 YE9 78 
YE9 H78 H38 H 0 1 N N N N N N -9.072  14.720 52.440 -7.005 0.769  1.690  H78 YE9 79 
YE9 H80 H39 H 0 1 N N N N N N -4.073  11.851 51.559 -7.995 -2.128 -3.095 H80 YE9 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YE9 N1  C2  SING N N 1  
YE9 N1  C35 SING N N 2  
YE9 N1  C39 SING N N 3  
YE9 C2  O3  DOUB N N 4  
YE9 C2  N4  SING N N 5  
YE9 N4  C5  SING N N 6  
YE9 N4  C13 SING N N 7  
YE9 C5  C6  SING N N 8  
YE9 C6  C7  SING N N 9  
YE9 C6  C12 SING N N 10 
YE9 C7  C8  SING N N 11 
YE9 C8  N9  SING N N 12 
YE9 N9  C10 SING N N 13 
YE9 N9  C15 SING N N 14 
YE9 C10 C11 SING N N 15 
YE9 C11 C12 SING N N 16 
YE9 C12 C13 SING N N 17 
YE9 C15 C16 SING N N 18 
YE9 C15 O33 DOUB N N 19 
YE9 C16 C17 DOUB Y N 20 
YE9 C16 C32 SING Y N 21 
YE9 C17 C18 SING Y N 22 
YE9 C18 C19 SING N N 23 
YE9 C18 N22 DOUB Y N 24 
YE9 C19 C20 SING N N 25 
YE9 C19 C21 SING N N 26 
YE9 C20 C21 SING N N 27 
YE9 N22 C23 SING Y N 28 
YE9 C23 O24 SING N N 29 
YE9 C23 C32 DOUB Y N 30 
YE9 O24 C25 SING N N 31 
YE9 C25 C26 SING N N 32 
YE9 C26 C27 SING N N 33 
YE9 C26 C31 SING N N 34 
YE9 C27 C28 SING N N 35 
YE9 C28 O29 SING N N 36 
YE9 O29 C30 SING N N 37 
YE9 C30 C31 SING N N 38 
YE9 C35 C36 SING N N 39 
YE9 C36 C37 DOUB Y N 40 
YE9 C36 O42 SING Y N 41 
YE9 C37 C38 SING N N 42 
YE9 C37 C40 SING Y N 43 
YE9 C38 C39 SING N N 44 
YE9 C40 N41 DOUB Y N 45 
YE9 C40 O43 SING N N 46 
YE9 N41 O42 SING Y N 47 
YE9 C10 H50 SING N N 48 
YE9 C10 H51 SING N N 49 
YE9 C11 H52 SING N N 50 
YE9 C11 H53 SING N N 51 
YE9 C13 H54 SING N N 52 
YE9 C13 H55 SING N N 53 
YE9 C17 H56 SING N N 54 
YE9 C19 H57 SING N N 55 
YE9 C20 H59 SING N N 56 
YE9 C20 H58 SING N N 57 
YE9 C21 H61 SING N N 58 
YE9 C21 H60 SING N N 59 
YE9 C25 H63 SING N N 60 
YE9 C25 H62 SING N N 61 
YE9 C26 H64 SING N N 62 
YE9 C27 H66 SING N N 63 
YE9 C27 H65 SING N N 64 
YE9 C28 H67 SING N N 65 
YE9 C28 H68 SING N N 66 
YE9 C5  H44 SING N N 67 
YE9 C5  H45 SING N N 68 
YE9 C6  H34 SING N N 69 
YE9 C7  H47 SING N N 70 
YE9 C7  H46 SING N N 71 
YE9 C8  H48 SING N N 72 
YE9 C8  H49 SING N N 73 
YE9 C12 H14 SING N N 74 
YE9 C30 H69 SING N N 75 
YE9 C30 H70 SING N N 76 
YE9 C31 H72 SING N N 77 
YE9 C31 H71 SING N N 78 
YE9 C32 H73 SING N N 79 
YE9 C35 H74 SING N N 80 
YE9 C35 H75 SING N N 81 
YE9 C38 H76 SING N N 82 
YE9 C38 H77 SING N N 83 
YE9 C39 H79 SING N N 84 
YE9 C39 H78 SING N N 85 
YE9 O43 H80 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YE9 SMILES           ACDLabs              12.01 "O=C(c1cc(nc(OCC2CCOCC2)c1)C1CC1)N1CCC2CN(CC2CC1)C(=O)N1Cc2onc(O)c2CC1"                                                                                                                            
YE9 InChI            InChI                1.06  "InChI=1S/C30H39N5O6/c36-28-24-5-10-34(17-26(24)41-32-28)30(38)35-15-21-3-8-33(9-4-22(21)16-35)29(37)23-13-25(20-1-2-20)31-27(14-23)40-18-19-6-11-39-12-7-19/h13-14,19-22H,1-12,15-18H2,(H,32,36)" 
YE9 InChIKey         InChI                1.06  MFAFPFCSTKBXTH-UHFFFAOYSA-N                                                                                                                                                                        
YE9 SMILES_CANONICAL CACTVS               3.385 "Oc1noc2CN(CCc12)C(=O)N3C[C@H]4CCN(CC[C@H]4C3)C(=O)c5cc(OCC6CCOCC6)nc(c5)C7CC7"                                                                                                                    
YE9 SMILES           CACTVS               3.385 "Oc1noc2CN(CCc12)C(=O)N3C[CH]4CCN(CC[CH]4C3)C(=O)c5cc(OCC6CCOCC6)nc(c5)C7CC7"                                                                                                                      
YE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CC[C@@H]5CN(C[C@@H]5CC4)C(=O)N6CCc7c(onc7O)C6"                                                                                                                  
YE9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CCC5CN(CC5CC4)C(=O)N6CCc7c(onc7O)C6"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YE9 "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl](3-hydroxy-4,7-dihydro[1,2]oxazolo[5,4-c]pyridin-6(5H)-yl)methanone"                                        
YE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{R},8~{a}~{S})-2-[(3-oxidanyl-5,7-dihydro-4~{H}-[1,2]oxazolo[5,4-c]pyridin-6-yl)carbonyl]-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YE9 "Create component" 2023-06-13 RCSB 
YE9 "Initial release"  2024-12-18 RCSB 
# 
