data_YFI
# 
_chem_comp.id                                    YFI 
_chem_comp.name                                  "(2R)-6-chloro-2-{[6-(methanesulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H16 Cl N5 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.859 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YFI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G60 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YFI O12  O1  O  0 1 N N N N N N -11.623 11.772 51.192 7.285  1.513  0.319  O12  YFI 1  
YFI C13  C1  C  0 1 N N N N N N -10.247 12.416 49.206 7.581  -1.097 0.783  C13  YFI 2  
YFI C15  C2  C  0 1 N N S N N N -13.248 5.910  45.886 -1.758 -0.610 0.283  C15  YFI 3  
YFI C16  C3  C  0 1 N N N N N N -13.455 4.421  45.595 -2.333 0.710  -0.273 C16  YFI 4  
YFI C17  C4  C  0 1 Y N N N N N -12.502 4.224  44.459 -3.836 0.553  -0.191 C17  YFI 5  
YFI C18  C5  C  0 1 Y N N N N N -12.127 5.438  43.868 -4.158 -0.779 -0.038 C18  YFI 6  
YFI C19  C6  C  0 1 N N N N N N -12.861 6.544  44.523 -2.895 -1.612 -0.005 C19  YFI 7  
YFI C20  C7  C  0 1 Y N N N N N -11.215 5.478  42.792 -5.500 -1.163 0.061  C20  YFI 8  
YFI C21  C8  C  0 1 Y N N N N N -10.659 4.275  42.357 -6.505 -0.198 0.003  C21  YFI 9  
YFI C22  C9  C  0 1 Y N N N N N -11.020 3.160  42.937 -6.170 1.133  -0.151 C22  YFI 10 
YFI C23  C10 C  0 1 Y N N N N N -11.968 3.046  44.045 -4.842 1.506  -0.248 C23  YFI 11 
YFI C25  C11 C  0 1 N N N N N N -10.918 6.713  42.199 -5.840 -2.544 0.221  C25  YFI 12 
YFI N1   N1  N  0 1 N N N N N N -14.436 6.540  46.499 -0.536 -0.988 -0.431 N1   YFI 13 
YFI C2   C12 C  0 1 Y N N N N N -14.397 7.666  47.222 0.688  -0.489 -0.022 C2   YFI 14 
YFI N3   N2  N  0 1 Y N N N N N -13.148 8.203  47.386 1.783  -0.842 -0.680 N3   YFI 15 
YFI C4   C13 C  0 1 Y N N N N N -13.142 9.348  48.068 2.968  -0.382 -0.313 C4   YFI 16 
YFI C5   C14 C  0 1 Y N N N N N -14.267 9.989  48.518 3.053  0.476  0.769  C5   YFI 17 
YFI C6   C15 C  0 1 Y N N N N N -15.455 9.380  48.272 1.890  0.826  1.436  C6   YFI 18 
YFI N7   N3  N  0 1 Y N N N N N -15.565 8.181  47.650 0.735  0.335  1.015  N7   YFI 19 
YFI C8   C16 C  0 1 N N N N N N -13.936 11.256 49.249 4.494  0.853  0.983  C8   YFI 20 
YFI N9   N4  N  0 1 N N N N N N -12.521 11.227 49.131 5.290  0.168  -0.043 N9   YFI 21 
YFI S10  S1  S  0 1 N N N N N N -11.599 12.319 49.983 6.932  0.254  -0.238 S10  YFI 22 
YFI O11  O2  O  0 1 N N N N N N -12.199 13.695 49.695 7.136  -0.020 -1.617 O11  YFI 23 
YFI C14  C17 C  0 1 N N N N N N -11.912 10.052 48.410 4.352  -0.608 -0.862 C14  YFI 24 
YFI CL24 CL1 CL 0 0 N N N N N N -10.315 1.652  42.337 -7.417 2.338  -0.224 CL24 YFI 25 
YFI N26  N5  N  0 1 N N N N N N -10.654 7.706  41.703 -6.111 -3.641 0.348  N26  YFI 26 
YFI H31  H1  H  0 1 N N N N N N -9.580  13.127 49.716 7.178  -2.046 0.428  H31  YFI 27 
YFI H32  H2  H  0 1 N N N N N N -9.771  11.425 49.174 8.668  -1.116 0.713  H32  YFI 28 
YFI H33  H3  H  0 1 N N N N N N -10.438 12.764 48.180 7.286  -0.943 1.821  H33  YFI 29 
YFI H36  H4  H  0 1 N N N N N N -12.392 6.015  46.569 -1.573 -0.531 1.355  H36  YFI 30 
YFI H37  H5  H  0 1 N N N N N N -13.187 3.798  46.461 -2.007 1.552  0.338  H37  YFI 31 
YFI H38  H6  H  0 1 N N N N N N -14.492 4.207  45.296 -2.023 0.851  -1.309 H38  YFI 32 
YFI H40  H7  H  0 1 N N N N N N -13.754 6.828  43.946 -2.737 -2.097 -0.968 H40  YFI 33 
YFI H39  H8  H  0 1 N N N N N N -12.217 7.425  44.660 -2.954 -2.357 0.789  H39  YFI 34 
YFI H41  H9  H  0 1 N N N N N N -9.940  4.265  41.552 -7.542 -0.490 0.078  H41  YFI 35 
YFI H42  H10 H  0 1 N N N N N N -12.223 2.099  44.498 -4.586 2.549  -0.368 H42  YFI 36 
YFI H27  H11 H  0 1 N N N N N N -14.831 5.845  47.100 -0.585 -1.588 -1.192 H27  YFI 37 
YFI H28  H12 H  0 1 N N N N N N -16.360 9.877  48.589 1.925  1.494  2.284  H28  YFI 38 
YFI H30  H13 H  0 1 N N N N N N -14.371 12.139 48.759 4.613  1.932  0.883  H30  YFI 39 
YFI H29  H14 H  0 1 N N N N N N -14.262 11.222 50.299 4.817  0.535  1.974  H29  YFI 40 
YFI H34  H15 H  0 1 N N N N N N -11.261 9.455  49.066 4.602  -1.668 -0.806 H34  YFI 41 
YFI H35  H16 H  0 1 N N N N N N -11.349 10.360 47.517 4.399  -0.271 -1.897 H35  YFI 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YFI N1  C2   SING N N 1  
YFI N1  C15  SING N N 2  
YFI C2  N3   DOUB Y N 3  
YFI C2  N7   SING Y N 4  
YFI N3  C4   SING Y N 5  
YFI C4  C5   DOUB Y N 6  
YFI C4  C14  SING N N 7  
YFI C5  C6   SING Y N 8  
YFI C5  C8   SING N N 9  
YFI C6  N7   DOUB Y N 10 
YFI C8  N9   SING N N 11 
YFI N9  S10  SING N N 12 
YFI N9  C14  SING N N 13 
YFI S10 O11  DOUB N N 14 
YFI S10 O12  DOUB N N 15 
YFI S10 C13  SING N N 16 
YFI C15 C16  SING N N 17 
YFI C15 C19  SING N N 18 
YFI C16 C17  SING N N 19 
YFI C17 C18  DOUB Y N 20 
YFI C17 C23  SING Y N 21 
YFI C18 C19  SING N N 22 
YFI C18 C20  SING Y N 23 
YFI C20 C21  DOUB Y N 24 
YFI C20 C25  SING N N 25 
YFI C21 C22  SING Y N 26 
YFI C22 C23  DOUB Y N 27 
YFI C22 CL24 SING N N 28 
YFI C25 N26  TRIP N N 29 
YFI C13 H31  SING N N 30 
YFI C13 H32  SING N N 31 
YFI C13 H33  SING N N 32 
YFI C15 H36  SING N N 33 
YFI C16 H37  SING N N 34 
YFI C16 H38  SING N N 35 
YFI C19 H40  SING N N 36 
YFI C19 H39  SING N N 37 
YFI C21 H41  SING N N 38 
YFI C23 H42  SING N N 39 
YFI N1  H27  SING N N 40 
YFI C6  H28  SING N N 41 
YFI C8  H30  SING N N 42 
YFI C8  H29  SING N N 43 
YFI C14 H34  SING N N 44 
YFI C14 H35  SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YFI SMILES           ACDLabs              12.01 "Clc1cc2CC(Cc2c(C#N)c1)Nc1ncc2CN(Cc2n1)S(C)(=O)=O"                                                                                                          
YFI InChI            InChI                1.06  "InChI=1S/C17H16ClN5O2S/c1-26(24,25)23-8-12-7-20-17(22-16(12)9-23)21-14-4-10-2-13(18)3-11(6-19)15(10)5-14/h2-3,7,14H,4-5,8-9H2,1H3,(H,20,21,22)/t14-/m1/s1" 
YFI InChIKey         InChI                1.06  ODVKNZKFSLCKRF-CQSZACIVSA-N                                                                                                                                 
YFI SMILES_CANONICAL CACTVS               3.385 "C[S](=O)(=O)N1Cc2cnc(N[C@H]3Cc4cc(Cl)cc(C#N)c4C3)nc2C1"                                                                                                    
YFI SMILES           CACTVS               3.385 "C[S](=O)(=O)N1Cc2cnc(N[CH]3Cc4cc(Cl)cc(C#N)c4C3)nc2C1"                                                                                                     
YFI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1Cc2cnc(nc2C1)N[C@H]3Cc4cc(cc(c4C3)C#N)Cl"                                                                                                      
YFI SMILES           "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1Cc2cnc(nc2C1)NC3Cc4cc(cc(c4C3)C#N)Cl"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YFI "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-6-chloro-2-{[6-(methanesulfonyl)-6,7-dihydro-5H-pyrrolo[3,4-d]pyrimidin-2-yl]amino}-2,3-dihydro-1H-indene-4-carbonitrile"   
YFI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-6-chloranyl-2-[(6-methylsulfonyl-5,7-dihydropyrrolo[3,4-d]pyrimidin-2-yl)amino]-2,3-dihydro-1~{H}-indene-4-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YFI "Create component" 2023-06-13 RCSB 
YFI "Initial release"  2024-12-18 RCSB 
# 
