data_YOI
# 
_chem_comp.id                                    YOI 
_chem_comp.name                                  "(2-{[(2R)-4,6-dichloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 Cl2 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.278 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YOI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G3P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YOI C10  C1  C  0 1 Y N N N N N -14.175 9.861  48.517 3.241  -0.892 -0.548 C10  YOI 1  
YOI C11  C2  C  0 1 Y N N N N N -13.038 9.273  48.064 2.316  -0.104 0.149  C11  YOI 2  
YOI C13  C3  C  0 1 N N N N N N -14.102 11.200 49.208 4.687  -0.608 -0.470 C13  YOI 3  
YOI C15  C4  C  0 1 N N N N N N -16.293 12.249 47.890 4.529  1.179  1.423  C15  YOI 4  
YOI C16  C5  C  0 1 N N N N N N -16.753 13.497 48.735 5.938  1.274  2.041  C16  YOI 5  
YOI C17  C6  C  0 1 N N N N N N -15.302 13.465 49.348 6.452  0.934  0.643  C17  YOI 6  
YOI C18  C7  C  0 1 N N N N N N -14.864 13.987 50.753 7.750  0.153  0.436  C18  YOI 7  
YOI C20  C8  C  0 1 N N N N N N -14.175 14.403 48.768 7.043  2.005  -0.274 C20  YOI 8  
YOI C22  C9  C  0 1 N N N N N N -13.422 4.265  45.505 -2.199 0.318  -0.925 C22  YOI 9  
YOI C23  C10 C  0 1 Y N N N N N -12.449 4.128  44.369 -3.645 0.519  -0.527 C23  YOI 10 
YOI C24  C11 C  0 1 Y N N N N N -11.874 2.927  43.944 -4.497 1.587  -0.753 C24  YOI 11 
YOI C25  C12 C  0 1 Y N N N N N -10.959 3.094  42.896 -5.799 1.549  -0.288 C25  YOI 12 
YOI C27  C13 C  0 1 Y N N N N N -10.632 4.260  42.332 -6.253 0.440  0.403  C27  YOI 13 
YOI C1   C14 C  0 1 Y N N N N N -11.234 5.423  42.808 -5.403 -0.627 0.629  C1   YOI 14 
YOI CL2  CL1 CL 0 0 N N N N N N -10.909 7.002  42.063 -5.973 -2.018 1.496  CL2  YOI 15 
YOI C3   C15 C  0 1 Y N N N N N -12.132 5.335  43.826 -4.098 -0.589 0.164  C3   YOI 16 
YOI C4   C16 C  0 1 N N N N N N -12.810 6.491  44.540 -2.987 -1.611 0.278  C4   YOI 17 
YOI C5   C17 C  0 1 N N S N N N -13.229 5.767  45.841 -1.690 -0.833 -0.031 C5   YOI 18 
YOI N6   N1  N  0 1 N N N N N N -14.418 6.380  46.456 -0.738 -1.676 -0.758 N6   YOI 19 
YOI C7   C18 C  0 1 Y N N N N N -14.321 7.535  47.158 0.613  -1.408 -0.690 C7   YOI 20 
YOI N8   N2  N  0 1 Y N N N N N -15.571 8.066  47.677 1.459  -2.184 -1.355 N8   YOI 21 
YOI C9   C19 C  0 1 Y N N N N N -15.408 9.228  48.299 2.759  -1.959 -1.316 C9   YOI 22 
YOI N12  N3  N  0 1 Y N N N N N -13.074 8.092  47.354 1.031  -0.391 0.053  N12  YOI 23 
YOI N14  N4  N  0 1 N N N N N N -15.241 12.016 49.073 5.144  0.333  0.379  N14  YOI 24 
YOI O19  O1  O  0 1 N N N N N N -13.744 14.658 50.147 8.320  1.433  0.087  O19  YOI 25 
YOI O21  O2  O  0 1 N N N N N N -13.088 11.574 49.752 5.466  -1.223 -1.173 O21  YOI 26 
YOI CL26 CL2 CL 0 0 N N N N N N -10.283 1.621  42.267 -6.862 2.891  -0.573 CL26 YOI 27 
YOI H33  H1  H  0 1 N N N N N N -12.085 9.741  48.264 2.648  0.725  0.755  H33  YOI 28 
YOI H35  H2  H  0 1 N N N N N N -15.852 12.483 46.910 3.810  0.650  2.049  H35  YOI 29 
YOI H34  H3  H  0 1 N N N N N N -17.049 11.458 47.772 4.148  2.131  1.051  H34  YOI 30 
YOI H37  H4  H  0 1 N N N N N N -16.991 14.396 48.147 6.205  2.276  2.377  H37  YOI 31 
YOI H36  H5  H  0 1 N N N N N N -17.565 13.301 49.450 6.144  0.504  2.785  H36  YOI 32 
YOI H38  H6  H  0 1 N N N N N N -15.590 14.663 51.229 8.158  -0.278 1.351  H38  YOI 33 
YOI H39  H7  H  0 1 N N N N N N -14.584 13.193 51.461 7.713  -0.555 -0.392 H39  YOI 34 
YOI H41  H8  H  0 1 N N N N N N -13.429 13.888 48.145 6.784  1.879  -1.325 H41  YOI 35 
YOI H40  H9  H  0 1 N N N N N N -14.549 15.290 48.235 6.896  3.024  0.084  H40  YOI 36 
YOI H42  H10 H  0 1 N N N N N N -13.153 3.619  46.353 -2.131 0.038  -1.977 H42  YOI 37 
YOI H43  H11 H  0 1 N N N N N N -14.453 4.046  45.189 -1.625 1.225  -0.739 H43  YOI 38 
YOI H44  H12 H  0 1 N N N N N N -12.111 1.967  44.379 -4.143 2.453  -1.293 H44  YOI 39 
YOI H45  H13 H  0 1 N N N N N N -9.916  4.300  41.524 -7.269 0.409  0.767  H45  YOI 40 
YOI H28  H14 H  0 1 N N N N N N -12.113 7.319  44.736 -2.952 -2.020 1.287  H28  YOI 41 
YOI H29  H15 H  0 1 N N N N N N -13.679 6.868  43.980 -3.131 -2.409 -0.450 H29  YOI 42 
YOI H30  H16 H  0 1 N N N N N N -12.391 5.843  46.549 -1.242 -0.447 0.885  H30  YOI 43 
YOI H31  H17 H  0 1 N N N N N N -15.066 6.551  45.714 -1.058 -2.424 -1.287 H31  YOI 44 
YOI H32  H18 H  0 1 N N N N N N -16.294 9.725  48.666 3.440  -2.590 -1.868 H32  YOI 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YOI C1  CL2  SING N N 1  
YOI C1  C3   DOUB Y N 2  
YOI C1  C27  SING Y N 3  
YOI C3  C4   SING N N 4  
YOI C3  C23  SING Y N 5  
YOI C4  C5   SING N N 6  
YOI C5  N6   SING N N 7  
YOI C5  C22  SING N N 8  
YOI N6  C7   SING N N 9  
YOI C7  N8   DOUB Y N 10 
YOI C7  N12  SING Y N 11 
YOI N8  C9   SING Y N 12 
YOI C9  C10  DOUB Y N 13 
YOI C10 C11  SING Y N 14 
YOI C10 C13  SING N N 15 
YOI C11 N12  DOUB Y N 16 
YOI C13 N14  SING N N 17 
YOI C13 O21  DOUB N N 18 
YOI N14 C15  SING N N 19 
YOI N14 C17  SING N N 20 
YOI C15 C16  SING N N 21 
YOI C16 C17  SING N N 22 
YOI C17 C18  SING N N 23 
YOI C17 C20  SING N N 24 
YOI C18 O19  SING N N 25 
YOI O19 C20  SING N N 26 
YOI C22 C23  SING N N 27 
YOI C23 C24  DOUB Y N 28 
YOI C24 C25  SING Y N 29 
YOI C25 CL26 SING N N 30 
YOI C25 C27  DOUB Y N 31 
YOI C11 H33  SING N N 32 
YOI C15 H35  SING N N 33 
YOI C15 H34  SING N N 34 
YOI C16 H37  SING N N 35 
YOI C16 H36  SING N N 36 
YOI C18 H38  SING N N 37 
YOI C18 H39  SING N N 38 
YOI C20 H41  SING N N 39 
YOI C20 H40  SING N N 40 
YOI C22 H42  SING N N 41 
YOI C22 H43  SING N N 42 
YOI C24 H44  SING N N 43 
YOI C27 H45  SING N N 44 
YOI C4  H28  SING N N 45 
YOI C4  H29  SING N N 46 
YOI C5  H30  SING N N 47 
YOI N6  H31  SING N N 48 
YOI C9  H32  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YOI SMILES           ACDLabs              12.01 "O=C(N1CCC21COC2)c1cnc(NC2Cc3cc(Cl)cc(Cl)c3C2)nc1"                                                                                                                   
YOI InChI            InChI                1.06  "InChI=1S/C19H18Cl2N4O2/c20-13-3-11-4-14(6-15(11)16(21)5-13)24-18-22-7-12(8-23-18)17(26)25-2-1-19(25)9-27-10-19/h3,5,7-8,14H,1-2,4,6,9-10H2,(H,22,23,24)/t14-/m1/s1" 
YOI InChIKey         InChI                1.06  MROQDOXKUSMSRW-CQSZACIVSA-N                                                                                                                                          
YOI SMILES_CANONICAL CACTVS               3.385 "Clc1cc(Cl)c2C[C@H](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                               
YOI SMILES           CACTVS               3.385 "Clc1cc(Cl)c2C[CH](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5"                                                                                                                
YOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1C[C@@H](C2)Nc3ncc(cn3)C(=O)N4CCC45COC5)Cl)Cl"                                                                                                            
YOI SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1CC(C2)Nc3ncc(cn3)C(=O)N4CCC45COC5)Cl)Cl"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YOI "SYSTEMATIC NAME" ACDLabs              12.01 "(2-{[(2R)-4,6-dichloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone"              
YOI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[[(2~{S})-4,6-bis(chloranyl)-2,3-dihydro-1~{H}-inden-2-yl]amino]pyrimidin-5-yl]-(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YOI "Create component" 2023-06-19 RCSB 
YOI "Initial release"  2024-12-18 RCSB 
# 
