data_YQX
# 
_chem_comp.id                                    YQX 
_chem_comp.name                                  "2-oxidanylideneoctanedioic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H12 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-11 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.178 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RE5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQX C10 C1  C 0 1 N N N N N N -9.545  -25.976 53.620 -4.612 -0.051 -0.001 C10 YQX 1  
YQX C2  C2  C 0 1 N N N N N N -7.634  -27.323 45.815 4.217  0.237  0.000  C2  YQX 2  
YQX C4  C3  C 0 1 N N N N N N -8.814  -28.165 46.294 2.840  -0.335 -0.000 C4  YQX 3  
YQX C5  C4  C 0 1 N N N N N N -8.796  -28.554 47.750 1.644  0.582  0.000  C5  YQX 4  
YQX C6  C5  C 0 1 N N N N N N -9.224  -27.425 48.690 0.362  -0.254 -0.001 C6  YQX 5  
YQX C7  C6  C 0 1 N N N N N N -9.176  -27.870 50.162 -0.853 0.677  -0.000 C7  YQX 6  
YQX C8  C7  C 0 1 N N N N N N -9.432  -26.695 51.152 -2.135 -0.159 -0.001 C8  YQX 7  
YQX C9  C8  C 0 1 N N N N N N -9.501  -27.130 52.630 -3.350 0.772  -0.000 C9  YQX 8  
YQX O1  O1  O 0 1 N N N N N N -7.449  -27.212 44.563 4.374  1.440  0.001  O1  YQX 9  
YQX O11 O2  O 0 1 N N N N N N -9.953  -24.881 53.190 -4.547 -1.258 0.003  O11 YQX 10 
YQX O12 O3  O 0 1 N N N N N N -9.263  -26.188 54.829 -5.809 0.557  -0.001 O12 YQX 11 
YQX O13 O4  O 0 1 N N N N N N -9.742  -28.515 45.547 2.684  -1.532 -0.001 O13 YQX 12 
YQX O3  O5  O 0 1 N N N N N N -6.909  -26.753 46.727 5.285  -0.581 -0.000 O3  YQX 13 
YQX H1  H1  H 0 1 N N N N N N -9.481  -29.403 47.892 1.668  1.210  0.891  H1  YQX 14 
YQX H2  H2  H 0 1 N N N N N N -7.773  -28.859 48.016 1.668  1.211  -0.889 H2  YQX 15 
YQX H3  H3  H 0 1 N N N N N N -8.547  -26.569 48.553 0.338  -0.882 -0.891 H3  YQX 16 
YQX H4  H4  H 0 1 N N N N N N -10.252 -27.123 48.441 0.338  -0.883 0.889  H4  YQX 17 
YQX H5  H5  H 0 1 N N N N N N -9.945  -28.640 50.323 -0.829 1.305  0.890  H5  YQX 18 
YQX H6  H6  H 0 1 N N N N N N -8.183  -28.295 50.369 -0.829 1.306  -0.890 H6  YQX 19 
YQX H7  H7  H 0 1 N N N N N N -8.616  -25.966 51.043 -2.159 -0.787 -0.891 H7  YQX 20 
YQX H8  H8  H 0 1 N N N N N N -10.387 -26.219 50.886 -2.159 -0.788 0.889  H8  YQX 21 
YQX H9  H9  H 0 1 N N N N N N -10.407 -27.738 52.768 -3.326 1.401  -0.890 H9  YQX 22 
YQX H10 H10 H 0 1 N N N N N N -8.613  -27.740 52.851 -3.326 1.400  0.890  H10 YQX 23 
YQX H11 H11 H 0 1 N N N N N N -9.411  -25.396 55.333 -6.591 -0.013 -0.001 H11 YQX 24 
YQX H12 H12 H 0 1 N N N N N N -6.223  -26.243 46.313 6.158  -0.164 0.000  H12 YQX 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQX O1  C2  DOUB N N 1  
YQX O13 C4  DOUB N N 2  
YQX C2  C4  SING N N 3  
YQX C2  O3  SING N N 4  
YQX C4  C5  SING N N 5  
YQX C5  C6  SING N N 6  
YQX C6  C7  SING N N 7  
YQX C7  C8  SING N N 8  
YQX C8  C9  SING N N 9  
YQX C9  C10 SING N N 10 
YQX O11 C10 DOUB N N 11 
YQX C10 O12 SING N N 12 
YQX C5  H1  SING N N 13 
YQX C5  H2  SING N N 14 
YQX C6  H3  SING N N 15 
YQX C6  H4  SING N N 16 
YQX C7  H5  SING N N 17 
YQX C7  H6  SING N N 18 
YQX C8  H7  SING N N 19 
YQX C8  H8  SING N N 20 
YQX C9  H9  SING N N 21 
YQX C9  H10 SING N N 22 
YQX O12 H11 SING N N 23 
YQX O3  H12 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQX InChI            InChI                1.06  "InChI=1S/C8H12O5/c9-6(8(12)13)4-2-1-3-5-7(10)11/h1-5H2,(H,10,11)(H,12,13)" 
YQX InChIKey         InChI                1.06  HAGOOZVJLSSXGZ-UHFFFAOYSA-N                                                 
YQX SMILES_CANONICAL CACTVS               3.385 "OC(=O)CCCCCC(=O)C(O)=O"                                                    
YQX SMILES           CACTVS               3.385 "OC(=O)CCCCCC(=O)C(O)=O"                                                    
YQX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)C(=O)O)CCC(=O)O"                                                  
YQX SMILES           "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)C(=O)O)CCC(=O)O"                                                  
# 
_pdbx_chem_comp_identifier.comp_id           YQX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-oxidanylideneoctanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQX "Create component" 2023-12-11 PDBE 
YQX "Initial release"  2024-12-18 RCSB 
# 
