data_004 # _chem_comp.id 004 _chem_comp.name "(2S)-amino(phenyl)ethanoic acid" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H9 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms L-Phenylglycine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-04-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 151.163 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 004 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3LIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 004 C C C 0 1 N N N Y N Y 30.985 2.380 53.450 -1.942 0.345 -0.239 C 004 1 004 N N N 0 1 N N N Y Y N 32.395 0.449 52.598 -1.352 -1.578 1.124 N 004 2 004 O O O 0 1 N N N Y N Y 31.212 2.275 54.630 -2.515 -0.429 -0.970 O 004 3 004 CA CA C 0 1 N N S Y N N 31.147 1.212 52.456 -1.028 -0.173 0.841 CA 004 4 004 CB CB C 0 1 Y N N N N N 29.980 0.222 52.767 0.403 -0.070 0.379 CB 004 5 004 CE CE C 0 1 Y N N N N N 27.618 -1.735 53.377 3.028 0.118 -0.466 CE 004 6 004 CD1 CD1 C 0 1 Y N N N N N 27.924 -0.569 54.352 2.506 1.074 0.385 CD1 004 7 004 CD2 CD2 C 0 1 Y N N N N N 28.503 -1.917 52.121 2.239 -0.934 -0.891 CD2 004 8 004 CG1 CG1 C 0 1 Y N N N N N 29.094 0.389 54.029 1.194 0.979 0.808 CG1 004 9 004 CG2 CG2 C 0 1 Y N N N N N 29.668 -0.949 51.814 0.927 -1.028 -0.468 CG2 004 10 004 OXT OXT O 0 1 N Y N Y N Y 30.545 3.645 52.950 -2.117 1.667 -0.394 O2 004 11 004 H HN H 0 1 N N N Y Y N 32.417 -0.284 51.919 -1.235 -2.149 0.300 HN 004 12 004 H2 HNA H 0 1 N Y N Y Y N 33.176 1.058 52.456 -0.796 -1.929 1.889 HNA 004 13 004 HA HA H 0 1 N N N Y N N 31.150 1.639 51.442 -1.162 0.420 1.745 HA 004 14 004 HE HE H 0 1 N N N N N N 26.798 -2.411 53.572 4.052 0.194 -0.800 HE 004 15 004 HD1 HD1 H 0 1 N N N N N N 27.329 -0.428 55.243 3.123 1.896 0.717 HD1 004 16 004 HD2 HD2 H 0 1 N N N N N N 28.303 -2.736 51.446 2.647 -1.681 -1.557 HD2 004 17 004 HG1 HG1 H 0 1 N N N N N N 29.302 1.204 54.707 0.786 1.726 1.474 HG1 004 18 004 HG2 HG2 H 0 1 N N N N N N 30.267 -1.094 50.927 0.310 -1.851 -0.799 HG2 004 19 004 HXT HXT H 0 1 N Y N Y N Y 30.490 4.267 53.666 -2.710 1.952 -1.103 H9 004 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 004 C O DOUB N N 1 004 C OXT SING N N 2 004 N H SING N N 3 004 N H2 SING N N 4 004 CA C SING N N 5 004 CA N SING N N 6 004 CA CB SING N N 7 004 CA HA SING N N 8 004 CB CG1 SING Y N 9 004 CE CD1 SING Y N 10 004 CE HE SING N N 11 004 CD1 HD1 SING N N 12 004 CD2 CE DOUB Y N 13 004 CD2 HD2 SING N N 14 004 CG1 CD1 DOUB Y N 15 004 CG1 HG1 SING N N 16 004 CG2 CB DOUB Y N 17 004 CG2 CD2 SING Y N 18 004 CG2 HG2 SING N N 19 004 OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 004 SMILES ACDLabs 12.01 "O=C(O)C(N)c1ccccc1" 004 SMILES_CANONICAL CACTVS 3.370 "N[C@H](C(O)=O)c1ccccc1" 004 SMILES CACTVS 3.370 "N[CH](C(O)=O)c1ccccc1" 004 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)[C@@H](C(=O)O)N" 004 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C(C(=O)O)N" 004 InChI InChI 1.03 "InChI=1S/C8H9NO2/c9-7(8(10)11)6-4-2-1-3-5-6/h1-5,7H,9H2,(H,10,11)/t7-/m0/s1" 004 InChIKey InChI 1.03 ZGUNAGUHMKGQNY-ZETCQYMHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 004 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-amino(phenyl)ethanoic acid" 004 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-azanyl-2-phenyl-ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 004 "Create component" 2010-04-27 RCSB 004 "Modify descriptor" 2011-06-04 RCSB 004 "Modify synonyms" 2021-03-01 PDBE 004 "Modify backbone" 2023-11-03 PDBE 004 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 004 _pdbx_chem_comp_synonyms.name L-Phenylglycine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 004 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #