data_006 # _chem_comp.id 006 _chem_comp.name "(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms KNI-10006 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 631.782 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 006 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FNU _chem_comp.pdbx_subcomponent_list "DBA 005 00B 00X" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 006 N2 N2 N 0 1 N N N -8.586 -50.791 -75.488 -2.428 0.132 -1.353 N 005 1 006 C20 C20 C 0 1 N N S -7.689 -51.822 -74.952 -1.020 0.199 -0.951 CB1 005 2 006 O20 O20 O 0 1 N N N -6.237 -51.177 -73.103 -0.265 -0.064 -3.231 OB2 005 3 006 C21 C21 C 0 1 N N N -7.506 -52.856 -76.063 -0.514 -1.210 -0.633 CG 005 4 006 O21 O21 O 0 1 N N N -6.746 -48.936 -75.065 2.066 0.111 -2.015 O 005 5 006 C22 C22 C 0 1 Y N N -8.668 -53.826 -76.100 -1.247 -1.748 0.568 CD 005 6 006 C23 C23 C 0 1 Y N N -8.734 -54.881 -75.181 -2.421 -2.459 0.400 CE1 005 7 006 C24 C24 C 0 1 Y N N -9.806 -55.773 -75.219 -3.094 -2.952 1.503 CZ1 005 8 006 C25 C25 C 0 1 Y N N -10.807 -55.608 -76.178 -2.593 -2.736 2.772 CH 005 9 006 C26 C26 C 0 1 Y N N -10.740 -54.558 -77.097 -1.419 -2.026 2.940 CZ2 005 10 006 C27 C27 C 0 1 Y N N -9.670 -53.665 -77.059 -0.743 -1.537 1.838 CE2 005 11 006 C28 C28 C 0 1 N N S -6.326 -51.231 -74.538 -0.192 0.794 -2.091 CA 005 12 006 C29 C29 C 0 1 N N N -5.967 -49.882 -75.139 1.244 0.925 -1.652 C 005 13 006 N30 N30 N 0 1 N N N -5.024 -46.885 -78.142 4.851 0.705 0.240 N30 00X 14 006 O30 O30 O 0 1 N N N -5.653 -45.257 -76.096 7.473 0.683 0.520 O30 00X 15 006 C31 C31 C 0 1 N N S -4.093 -45.773 -77.936 5.362 -0.491 0.915 C31 00X 16 006 C32 C32 C 0 1 Y N N -4.237 -44.815 -79.050 5.414 -1.657 -0.049 C32 00X 17 006 C33 C33 C 0 1 Y N N -4.232 -45.125 -80.411 4.491 -2.088 -0.987 C33 00X 18 006 C34 C34 C 0 1 Y N N -4.383 -44.069 -81.316 4.759 -3.195 -1.768 C34 00X 19 006 C35 C35 C 0 1 N N R -4.391 -44.924 -76.684 6.822 -0.271 1.362 C35 00X 20 006 C36 C36 C 0 1 Y N N -4.384 -43.524 -78.600 6.608 -2.336 0.104 C36 00X 21 006 C37 C37 C 0 1 Y N N -4.534 -42.461 -79.489 6.875 -3.446 -0.680 C37 00X 22 006 C38 C38 C 0 1 Y N N -4.529 -42.753 -80.857 5.952 -3.875 -1.615 C38 00X 23 006 C39 C39 C 0 1 N N N -4.367 -43.443 -77.091 7.439 -1.674 1.182 C39 00X 24 006 C40 C40 C 0 1 Y N N -14.432 -48.651 -78.957 -9.751 -0.087 -0.269 "C4'" DBA 25 006 O40 O40 O 0 1 N N N -10.278 -51.226 -74.049 -3.104 0.191 0.759 O1 DBA 26 006 C41 C41 C 0 1 Y N N -14.279 -49.966 -78.513 -9.026 -1.255 -0.121 "C3'" DBA 27 006 O41 O41 O 0 1 N N N -10.951 -49.842 -76.967 -5.674 0.083 0.334 "O1'" DBA 28 006 C42 C42 C 0 1 Y N N -13.119 -50.362 -77.846 -7.661 -1.201 0.080 "C2'" DBA 29 006 C43 C43 C 0 1 N N N -12.996 -51.797 -77.387 -6.871 -2.474 0.241 CM2 DBA 30 006 C44 C44 C 0 1 N N N -11.201 -47.063 -77.866 -7.051 2.533 0.045 CM6 DBA 31 006 C45 C45 C 0 1 Y N N -12.101 -49.432 -77.617 -7.017 0.027 0.135 "C1'" DBA 32 006 C46 C46 C 0 1 Y N N -12.260 -48.112 -78.072 -7.747 1.197 -0.014 "C6'" DBA 33 006 C47 C47 C 0 1 Y N N -13.422 -47.724 -78.736 -9.112 1.138 -0.215 "C5'" DBA 34 006 C48 C48 C 0 1 N N N -9.810 -50.590 -74.982 -3.397 0.135 -0.416 C1 DBA 35 006 C49 C49 C 0 1 N N N -10.648 -49.505 -75.612 -4.845 0.067 -0.830 C2 DBA 36 006 C50 C50 C 0 1 N N N -3.807 -50.920 -75.819 0.645 2.915 -0.306 CD 00B 37 006 N50 N50 N 0 1 N N N -4.756 -49.805 -75.731 1.615 1.949 -0.857 N 00B 38 006 O50 O50 O 0 1 N N N -5.994 -48.840 -77.943 2.757 0.182 0.752 O 00B 39 006 S50 S50 S 0 1 N N N -2.220 -50.199 -75.976 1.500 3.528 1.204 SG3 00B 40 006 C51 C51 C 0 1 N N N -2.690 -48.615 -76.561 3.180 3.396 0.459 CB 00B 41 006 C52 C52 C 0 1 N N N -1.994 -47.578 -75.679 3.530 4.656 -0.335 CG1 00B 42 006 C53 C53 C 0 1 N N N -2.211 -48.527 -78.011 4.235 3.112 1.530 CG2 00B 43 006 C54 C54 C 0 1 N N R -4.239 -48.551 -76.360 3.001 2.181 -0.479 CA 00B 44 006 C55 C55 C 0 1 N N N -5.113 -48.091 -77.542 3.526 0.951 0.215 C 00B 45 006 HN2 HN2 H 0 1 N N N -8.275 -50.224 -76.251 -2.662 0.091 -2.293 HN 005 46 006 H20 H20 H 0 1 N N N -8.121 -52.272 -74.046 -0.925 0.827 -0.065 HB1 005 47 006 HO20 HO20 H 0 0 N N N -5.397 -50.813 -72.851 0.068 -0.958 -3.073 HA 005 48 006 H21 H21 H 0 1 N N N -7.445 -52.335 -77.030 -0.691 -1.861 -1.489 HG 005 49 006 H21A H21A H 0 0 N N N -6.578 -53.417 -75.879 0.554 -1.172 -0.420 HGA 005 50 006 H23 H23 H 0 1 N N N -7.955 -55.004 -74.443 -2.813 -2.628 -0.592 HE1 005 51 006 H24 H24 H 0 1 N N N -9.861 -56.586 -74.511 -4.011 -3.507 1.371 HZ1 005 52 006 H25 H25 H 0 1 N N N -11.638 -56.296 -76.210 -3.118 -3.121 3.634 HH 005 53 006 H26 H26 H 0 1 N N N -11.517 -54.438 -77.837 -1.027 -1.856 3.932 HZ2 005 54 006 H27 H27 H 0 1 N N N -9.616 -52.852 -77.768 0.175 -0.982 1.969 HE2 005 55 006 H28 H28 H 0 1 N N N -5.581 -51.920 -74.962 -0.584 1.777 -2.350 HOB2 005 56 006 HN30 HN30 H 0 0 N N N -5.712 -46.723 -78.849 5.466 1.319 -0.189 HN30 00X 57 006 HO30 HO30 H 0 0 N N N -5.799 -44.714 -75.330 8.394 0.856 0.760 HO30 00X 58 006 H31 H31 H 0 1 N N N -3.103 -46.244 -77.847 4.736 -0.736 1.773 H31 00X 59 006 H33 H33 H 0 1 N N N -4.116 -46.143 -80.753 3.558 -1.558 -1.107 H33 00X 60 006 H34 H34 H 0 1 N N N -4.387 -44.270 -82.377 4.036 -3.529 -2.498 H34 00X 61 006 H35 H35 H 0 1 N N N -3.623 -45.130 -75.924 6.865 0.043 2.405 H35 00X 62 006 H37 H37 H 0 1 N N N -4.650 -41.448 -79.134 7.808 -3.977 -0.561 H37 00X 63 006 H38 H38 H 0 1 N N N -4.640 -41.951 -81.572 6.164 -4.741 -2.225 H38 00X 64 006 H39 H39 H 0 1 N N N -5.236 -42.895 -76.699 8.478 -1.592 0.861 H39 00X 65 006 H39A H39A H 0 0 N N N -3.470 -42.928 -76.717 7.373 -2.239 2.111 H39A 00X 66 006 H40 H40 H 0 1 N N N -15.334 -48.355 -79.471 -10.818 -0.132 -0.431 "H4'" DBA 67 006 H41 H41 H 0 1 N N N -15.067 -50.684 -78.688 -9.528 -2.211 -0.164 "H3'" DBA 68 006 H43 H43 H 0 1 N N N -12.531 -52.398 -78.182 -6.529 -2.816 -0.736 HM21 DBA 69 006 H43A H43A H 0 0 N N N -12.372 -51.840 -76.482 -6.010 -2.289 0.883 HM22 DBA 70 006 H43B H43B H 0 0 N N N -13.996 -52.197 -77.162 -7.503 -3.239 0.693 HM23 DBA 71 006 H44 H44 H 0 1 N N N -10.510 -47.066 -78.722 -6.731 2.820 -0.956 HM61 DBA 72 006 H44A H44A H 0 0 N N N -11.676 -46.074 -77.782 -7.737 3.283 0.437 HM62 DBA 73 006 H44B H44B H 0 0 N N N -10.643 -47.282 -76.944 -6.180 2.460 0.698 HM63 DBA 74 006 H47 H47 H 0 1 N N N -13.537 -46.706 -79.078 -9.681 2.049 -0.331 "H5'" DBA 75 006 H49 H49 H 0 1 N N N -10.090 -48.557 -75.590 -5.020 -0.853 -1.388 H21 DBA 76 006 H49A H49A H 0 0 N N N -11.585 -49.397 -75.047 -5.083 0.924 -1.459 H22 DBA 77 006 H50 H50 H 0 1 N N N -4.033 -51.552 -76.691 0.469 3.729 -1.009 HD 00B 78 006 H50A H50A H 0 0 N N N -3.860 -51.545 -74.915 -0.291 2.419 -0.049 HDA 00B 79 006 H52 H52 H 0 1 N N N -2.266 -46.567 -76.017 3.535 5.517 0.334 HG1 00B 80 006 H52A H52A H 0 0 N N N -2.311 -47.713 -74.634 4.516 4.540 -0.784 HG1A 00B 81 006 H52B H52B H 0 0 N N N -0.904 -47.708 -75.751 2.789 4.809 -1.119 HG1B 00B 82 006 H53 H53 H 0 1 N N N -2.482 -47.546 -78.428 3.986 2.187 2.049 HG2 00B 83 006 H53A H53A H 0 0 N N N -1.118 -48.650 -78.044 5.213 3.013 1.059 HG2A 00B 84 006 H53B H53B H 0 0 N N N -2.688 -49.322 -78.603 4.258 3.935 2.245 HG2B 00B 85 006 H54 H54 H 0 1 N N N -4.352 -47.704 -75.667 3.587 2.346 -1.383 HA 00B 86 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 006 N2 C48 SING N N 1 006 N2 C20 SING N N 2 006 N2 HN2 SING N N 3 006 C21 C20 SING N N 4 006 C20 C28 SING N N 5 006 C20 H20 SING N N 6 006 C28 O20 SING N N 7 006 O20 HO20 SING N N 8 006 C22 C21 SING N N 9 006 C21 H21 SING N N 10 006 C21 H21A SING N N 11 006 C29 O21 DOUB N N 12 006 C27 C22 DOUB Y N 13 006 C22 C23 SING Y N 14 006 C24 C23 DOUB Y N 15 006 C23 H23 SING N N 16 006 C25 C24 SING Y N 17 006 C24 H24 SING N N 18 006 C26 C25 DOUB Y N 19 006 C25 H25 SING N N 20 006 C26 C27 SING Y N 21 006 C26 H26 SING N N 22 006 C27 H27 SING N N 23 006 C29 C28 SING N N 24 006 C28 H28 SING N N 25 006 N50 C29 SING N N 26 006 N30 C31 SING N N 27 006 N30 C55 SING N N 28 006 N30 HN30 SING N N 29 006 C35 O30 SING N N 30 006 O30 HO30 SING N N 31 006 C32 C31 SING N N 32 006 C31 C35 SING N N 33 006 C31 H31 SING N N 34 006 C33 C32 DOUB Y N 35 006 C32 C36 SING Y N 36 006 C34 C33 SING Y N 37 006 C33 H33 SING N N 38 006 C34 C38 DOUB Y N 39 006 C34 H34 SING N N 40 006 C39 C35 SING N N 41 006 C35 H35 SING N N 42 006 C37 C36 DOUB Y N 43 006 C36 C39 SING N N 44 006 C38 C37 SING Y N 45 006 C37 H37 SING N N 46 006 C38 H38 SING N N 47 006 C39 H39 SING N N 48 006 C39 H39A SING N N 49 006 C40 C47 DOUB Y N 50 006 C40 C41 SING Y N 51 006 C40 H40 SING N N 52 006 C48 O40 DOUB N N 53 006 C41 C42 DOUB Y N 54 006 C41 H41 SING N N 55 006 C45 O41 SING N N 56 006 O41 C49 SING N N 57 006 C42 C45 SING Y N 58 006 C42 C43 SING N N 59 006 C43 H43 SING N N 60 006 C43 H43A SING N N 61 006 C43 H43B SING N N 62 006 C46 C44 SING N N 63 006 C44 H44 SING N N 64 006 C44 H44A SING N N 65 006 C44 H44B SING N N 66 006 C46 C45 DOUB Y N 67 006 C47 C46 SING Y N 68 006 C47 H47 SING N N 69 006 C49 C48 SING N N 70 006 C49 H49 SING N N 71 006 C49 H49A SING N N 72 006 S50 C50 SING N N 73 006 C50 N50 SING N N 74 006 C50 H50 SING N N 75 006 C50 H50A SING N N 76 006 C54 N50 SING N N 77 006 O50 C55 DOUB N N 78 006 C51 S50 SING N N 79 006 C53 C51 SING N N 80 006 C51 C54 SING N N 81 006 C51 C52 SING N N 82 006 C52 H52 SING N N 83 006 C52 H52A SING N N 84 006 C52 H52B SING N N 85 006 C53 H53 SING N N 86 006 C53 H53A SING N N 87 006 C53 H53B SING N N 88 006 C55 C54 SING N N 89 006 C54 H54 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 006 SMILES ACDLabs 12.01 "O=C(NC2c1ccccc1CC2O)C5N(C(=O)C(O)C(NC(=O)COc3c(cccc3C)C)Cc4ccccc4)CSC5(C)C" 006 SMILES_CANONICAL CACTVS 3.370 "Cc1cccc(C)c1OCC(=O)N[C@@H](Cc2ccccc2)[C@H](O)C(=O)N3CSC(C)(C)[C@H]3C(=O)N[C@@H]4[C@H](O)Cc5ccccc45" 006 SMILES CACTVS 3.370 "Cc1cccc(C)c1OCC(=O)N[CH](Cc2ccccc2)[CH](O)C(=O)N3CSC(C)(C)[CH]3C(=O)N[CH]4[CH](O)Cc5ccccc45" 006 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cccc(c1OCC(=O)N[C@@H](Cc2ccccc2)[C@@H](C(=O)N3CSC([C@H]3C(=O)N[C@H]4c5ccccc5C[C@H]4O)(C)C)O)C" 006 SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cccc(c1OCC(=O)NC(Cc2ccccc2)C(C(=O)N3CSC(C3C(=O)NC4c5ccccc5CC4O)(C)C)O)C" 006 InChI InChI 1.03 "InChI=1S/C35H41N3O6S/c1-21-11-10-12-22(2)31(21)44-19-28(40)36-26(17-23-13-6-5-7-14-23)30(41)34(43)38-20-45-35(3,4)32(38)33(42)37-29-25-16-9-8-15-24(25)18-27(29)39/h5-16,26-27,29-30,32,39,41H,17-20H2,1-4H3,(H,36,40)(H,37,42)/t26-,27+,29-,30-,32+/m0/s1" 006 InChIKey InChI 1.03 KKTYZYHUPKXLPL-RIQJEONASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 006 "SYSTEMATIC NAME" ACDLabs 12.01 "(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide" 006 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(4R)-3-[(2S,3S)-3-[2-(2,6-dimethylphenoxy)ethanoylamino]-2-hydroxy-4-phenyl-butanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 006 "Create component" 2008-07-03 RCSB 006 "Modify aromatic_flag" 2011-06-04 RCSB 006 "Modify descriptor" 2011-06-04 RCSB 006 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 006 _pdbx_chem_comp_synonyms.name KNI-10006 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##