data_01W # _chem_comp.id 01W _chem_comp.name "(2S)-2-ammonio-4-[(2,4-dinitrophenyl)amino]butanoate" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H12 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.225 _chem_comp.one_letter_code X _chem_comp.three_letter_code 01W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DS9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 01W O52 O52 O -1 1 N N N N N N -14.206 38.704 -20.762 -5.094 -2.353 -0.151 O52 01W 1 01W N5 N5 N 1 1 N N N N N N -13.626 38.805 -19.695 -4.811 -1.169 -0.098 N5 01W 2 01W O5 O5 O 0 1 N N N N N N -13.953 39.687 -18.926 -5.696 -0.333 -0.072 O5 01W 3 01W C5 C5 C 0 1 Y N N N N N -12.605 37.904 -19.337 -3.393 -0.748 -0.059 C5 01W 4 01W C6 C6 C 0 1 Y N N N N N -12.047 37.965 -18.064 -2.390 -1.699 -0.082 C6 01W 5 01W C7 C7 C 0 1 Y N N N N N -11.050 37.069 -17.693 -1.065 -1.309 -0.046 C7 01W 6 01W C4 C4 C 0 1 Y N N N N N -12.156 36.936 -20.234 -3.074 0.597 -0.004 C4 01W 7 01W C3 C3 C 0 1 Y N N N N N -11.153 36.044 -19.865 -1.752 0.994 0.032 C3 01W 8 01W N3 N3 N 1 1 N N N N N N -10.701 35.070 -20.773 -1.412 2.433 0.090 N3 01W 9 01W O32 O32 O -1 1 N N N N N N -9.541 34.693 -20.741 -2.097 3.195 0.748 O32 01W 10 01W O3 O3 O 0 1 N N N N N N -11.459 34.598 -21.604 -0.446 2.856 -0.520 O3 01W 11 01W C2 C2 C 0 1 Y N N N N N -10.603 36.107 -18.594 -0.742 0.040 0.015 C2 01W 12 01W N13 N13 N 0 1 N N N N N N -9.630 35.231 -18.240 0.597 0.438 0.052 N13 01W 13 01W C1 C1 C 0 1 N N N N N N -9.297 35.002 -16.848 1.661 -0.557 -0.103 C1 01W 14 01W CB CB C 0 1 N N N N N N -10.430 34.319 -16.093 3.023 0.137 -0.025 CB 01W 15 01W CA CA C 0 1 N N S Y N N -10.160 34.367 -14.599 4.134 -0.902 -0.186 CA 01W 16 01W N N N 1 1 N N N Y Y N -11.220 33.641 -13.933 4.105 -1.831 0.952 N 01W 17 01W C C C 0 1 N N N Y N Y -10.225 35.803 -14.134 5.470 -0.206 -0.232 C 01W 18 01W O O O 0 1 N N N Y N Y -11.294 36.342 -13.961 6.088 -0.003 0.799 O 01W 19 01W OXT OXT O -1 1 N Y N Y N Y -9.076 36.435 -13.949 5.932 0.156 -1.301 OXT 01W 20 01W H6 H6 H 0 1 N N N N N N -12.389 38.711 -17.362 -2.642 -2.748 -0.129 H6 01W 21 01W H7 H7 H 0 1 N N N N N N -10.621 37.120 -16.703 -0.282 -2.053 -0.063 H7 01W 22 01W H4 H4 H 0 1 N N N N N N -12.589 36.878 -21.222 -3.860 1.337 0.009 H4 01W 23 01W HN13 HN13 H 0 0 N N N N N N -9.920 34.344 -18.599 0.822 1.373 0.179 HN13 01W 24 01W H11 H11 H 0 1 N N N N N N -8.406 34.358 -16.801 1.584 -1.297 0.693 H11 01W 25 01W H21 H21 H 0 1 N N N N N N -9.114 35.979 -16.377 1.560 -1.050 -1.069 H21 01W 26 01W H1B H1B H 0 1 N N N N N N -11.376 34.838 -16.309 3.099 0.878 -0.821 H1B 01W 27 01W H2B H2B H 0 1 N N N N N N -10.498 33.269 -16.415 3.124 0.631 0.942 H2B 01W 28 01W HA HA H 0 1 N N N Y N N -9.173 33.935 -14.376 3.981 -1.457 -1.112 HA 01W 29 01W H H1N H 0 1 N N N Y Y N -10.963 33.474 -12.981 3.211 -2.297 0.983 H1N 01W 30 01W H2 H2N H 0 1 N Y N Y Y N -12.062 34.180 -13.961 4.839 -2.516 0.846 H2N 01W 31 01W H3 H3N H 0 1 N Y N Y Y N -11.368 32.767 -14.397 4.247 -1.317 1.809 H3N 01W 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 01W O3 N3 DOUB N N 1 01W N3 O32 SING N N 2 01W N3 C3 SING N N 3 01W O52 N5 SING N N 4 01W C4 C3 DOUB Y N 5 01W C4 C5 SING Y N 6 01W C3 C2 SING Y N 7 01W N5 C5 SING N N 8 01W N5 O5 DOUB N N 9 01W C5 C6 DOUB Y N 10 01W C2 N13 SING N N 11 01W C2 C7 DOUB Y N 12 01W N13 C1 SING N N 13 01W C6 C7 SING Y N 14 01W C1 CB SING N N 15 01W CB CA SING N N 16 01W CA C SING N N 17 01W CA N SING N N 18 01W C O DOUB N N 19 01W C OXT SING N N 20 01W C6 H6 SING N N 21 01W C7 H7 SING N N 22 01W C4 H4 SING N N 23 01W N13 HN13 SING N N 24 01W C1 H11 SING N N 25 01W C1 H21 SING N N 26 01W CB H1B SING N N 27 01W CB H2B SING N N 28 01W CA HA SING N N 29 01W N H SING N N 30 01W N H2 SING N N 31 01W N H3 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 01W SMILES ACDLabs 10.04 "[O-][N+](=O)c1ccc(NCCC(C([O-])=O)[NH3+])c(c1)[N+]([O-])=O" 01W SMILES_CANONICAL CACTVS 3.341 "[NH3+][C@@H](CCNc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C([O-])=O" 01W SMILES CACTVS 3.341 "[NH3+][CH](CCNc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C([O-])=O" 01W SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])NCC[C@@H](C(=O)[O-])[NH3+]" 01W SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])NCCC(C(=O)[O-])[NH3+]" 01W InChI InChI 1.03 "InChI=1S/C10H12N4O6/c11-7(10(15)16)3-4-12-8-2-1-6(13(17)18)5-9(8)14(19)20/h1-2,5,7,12H,3-4,11H2,(H,15,16)/t7-/m0/s1" 01W InChIKey InChI 1.03 ZSHUSDSLXWTXDN-ZETCQYMHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 01W "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-ammonio-4-[(2,4-dinitrophenyl)amino]butanoate" 01W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-azaniumyl-4-[(2,4-dinitrophenyl)amino]butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 01W "Create component" 2008-07-21 RCSB 01W "Modify aromatic_flag" 2011-06-04 RCSB 01W "Modify descriptor" 2011-06-04 RCSB 01W "Other modification" 2023-08-10 PDBE 01W "Modify backbone" 2023-11-03 PDBE #