data_01W # _chem_comp.id 01W _chem_comp.name "(2S)-2-ammonio-4-[(2,4-dinitrophenyl)amino]butanoate" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H12 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-21 _chem_comp.pdbx_modified_date 2024-06-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.225 _chem_comp.one_letter_code X _chem_comp.three_letter_code 01W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DS9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 01W O52 O52 O -1 1 N N N N N N -14.206 38.704 -20.762 -5.119 -2.339 -0.187 O52 01W 1 01W N5 N5 N 1 1 N N N N N N -13.626 38.805 -19.695 -4.831 -1.158 -0.121 N5 01W 2 01W O5 O5 O 0 1 N N N N N N -13.953 39.687 -18.926 -5.712 -0.317 -0.092 O5 01W 3 01W C5 C5 C 0 1 Y N N N N N -12.605 37.904 -19.337 -3.411 -0.744 -0.070 C5 01W 4 01W C6 C6 C 0 1 Y N N N N N -12.047 37.965 -18.064 -2.412 -1.700 -0.097 C6 01W 5 01W C7 C7 C 0 1 Y N N N N N -11.050 37.069 -17.693 -1.086 -1.317 -0.050 C7 01W 6 01W C4 C4 C 0 1 Y N N N N N -12.156 36.936 -20.234 -3.085 0.599 -0.001 C4 01W 7 01W C3 C3 C 0 1 Y N N N N N -11.153 36.044 -19.865 -1.762 0.988 0.046 C3 01W 8 01W N3 N3 N 1 1 N N N N N N -10.701 35.070 -20.773 -1.414 2.425 0.120 N3 01W 9 01W O32 O32 O -1 1 N N N N N N -9.541 34.693 -20.741 -2.100 3.184 0.782 O32 01W 10 01W O3 O3 O 0 1 N N N N N N -11.459 34.598 -21.604 -0.443 2.849 -0.481 O3 01W 11 01W C2 C2 C 0 1 Y N N N N N -10.603 36.107 -18.594 -0.756 0.030 0.026 C2 01W 12 01W N13 N13 N 0 1 N N N N N N -9.630 35.231 -18.240 0.584 0.421 0.074 N13 01W 13 01W C1 C1 C 0 1 N N N N N N -9.297 35.002 -16.848 1.645 -0.578 -0.085 C1 01W 14 01W CB CB C 0 1 N N N N N N -10.430 34.319 -16.093 3.009 0.108 0.007 CB 01W 15 01W CA CA C 0 1 N N S N Y N -10.160 34.367 -14.599 4.116 -0.935 -0.158 CA 01W 16 01W N N N 0 1 N N N Y Y N -11.220 33.641 -13.933 4.077 -1.874 0.971 N 01W 17 01W C C C 0 1 N N N N Y Y -10.225 35.803 -14.134 5.456 -0.245 -0.190 C 01W 18 01W O O O 0 1 N N N N Y Y -11.294 36.342 -13.961 6.145 -0.217 0.802 O 01W 19 01W OXT OXT O 0 1 N Y N N Y Y -9.076 36.435 -13.949 5.883 0.339 -1.321 OXT 01W 20 01W H6 H6 H 0 1 N N N N N N -12.389 38.711 -17.362 -2.670 -2.747 -0.156 H6 01W 21 01W H7 H7 H 0 1 N N N N N N -10.621 37.120 -16.703 -0.306 -2.064 -0.071 H7 01W 22 01W H4 H4 H 0 1 N N N N N N -12.589 36.878 -21.222 -3.868 1.343 0.015 H4 01W 23 01W HN13 HN13 H 0 0 N N N N N N -9.896 34.344 -18.618 0.813 1.353 0.212 HN13 01W 24 01W H11 H11 H 0 1 N N N N N N -8.402 34.364 -16.798 1.560 -1.326 0.704 H11 01W 25 01W H21 H21 H 0 1 N N N N N N -9.085 35.970 -16.370 1.546 -1.061 -1.056 H21 01W 26 01W H1B H1B H 0 1 N N N N N N -11.376 34.837 -16.309 3.094 0.856 -0.781 H1B 01W 27 01W H2B H2B H 0 1 N N N N N N -10.504 33.270 -16.417 3.108 0.592 0.979 H2B 01W 28 01W HA HA H 0 1 N N N N Y N -9.174 33.934 -14.374 3.966 -1.480 -1.090 HA 01W 29 01W H H1N H 0 1 N N N Y Y N -11.066 33.657 -12.945 4.756 -2.611 0.852 H 01W 30 01W H2 H2N H 0 1 N Y N Y Y N -12.099 34.070 -14.140 4.214 -1.393 1.847 H2 01W 31 01W HXT HXT H 0 1 N Y N N Y Y -9.246 37.328 -13.674 6.748 0.769 -1.293 HXT 01W 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 01W O3 N3 DOUB N N 1 01W N3 O32 SING N N 2 01W N3 C3 SING N N 3 01W O52 N5 SING N N 4 01W C4 C3 DOUB Y N 5 01W C4 C5 SING Y N 6 01W C3 C2 SING Y N 7 01W N5 C5 SING N N 8 01W N5 O5 DOUB N N 9 01W C5 C6 DOUB Y N 10 01W C2 N13 SING N N 11 01W C2 C7 DOUB Y N 12 01W N13 C1 SING N N 13 01W C6 C7 SING Y N 14 01W C1 CB SING N N 15 01W CB CA SING N N 16 01W CA C SING N N 17 01W CA N SING N N 18 01W C O DOUB N N 19 01W C OXT SING N N 20 01W C6 H6 SING N N 21 01W C7 H7 SING N N 22 01W C4 H4 SING N N 23 01W N13 HN13 SING N N 24 01W C1 H11 SING N N 25 01W C1 H21 SING N N 26 01W CB H1B SING N N 27 01W CB H2B SING N N 28 01W CA HA SING N N 29 01W N H SING N N 30 01W N H2 SING N N 31 01W OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 01W SMILES ACDLabs 10.04 "[O-][N+](=O)c1ccc(NCCC(C([O-])=O)[NH3+])c(c1)[N+]([O-])=O" 01W InChI InChI 1.06 "InChI=1S/C10H12N4O6/c11-7(10(15)16)3-4-12-8-2-1-6(13(17)18)5-9(8)14(19)20/h1-2,5,7,12H,3-4,11H2,(H,15,16)/t7-/m0/s1" 01W InChIKey InChI 1.06 ZSHUSDSLXWTXDN-ZETCQYMHSA-N 01W SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCNc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C(O)=O" 01W SMILES CACTVS 3.385 "N[CH](CCNc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C(O)=O" 01W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])NCC[C@@H](C(=O)O)N" 01W SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])NCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 01W "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-ammonio-4-[(2,4-dinitrophenyl)amino]butanoate" 01W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-4-[(2,4-dinitrophenyl)amino]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 01W "Create component" 2008-07-21 RCSB 01W "Modify aromatic_flag" 2011-06-04 RCSB 01W "Modify descriptor" 2011-06-04 RCSB 01W "Other modification" 2023-08-10 PDBE 01W "Modify backbone" 2023-11-03 PDBE 01W "Other modification" 2024-06-26 PDBE #