data_04J # _chem_comp.id 04J _chem_comp.name Aminopterin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C19 H20 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-11-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.413 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 04J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3URW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 04J C C C 0 1 N N N 19.846 -36.763 4.370 3.748 1.123 0.932 C 04J 1 04J N N N 0 1 N N N 20.558 -35.709 3.994 4.562 0.498 0.058 N 04J 2 04J O O O 0 1 N N N 20.449 -37.824 5.070 4.220 1.746 1.864 O 04J 3 04J N1 N1 N 0 1 Y N N 14.073 -35.710 -3.005 -7.929 0.491 -0.740 N1 04J 4 04J O1 O1 O 0 1 N N N 23.592 -33.986 4.784 5.772 2.592 -0.952 O1 04J 5 04J C2 C2 C 0 1 Y N N 13.012 -35.291 -3.777 -8.613 -0.353 0.007 C2 04J 6 04J O2 O2 O 0 1 N N N 21.616 -33.733 5.591 7.849 2.108 -0.372 O2 04J 7 04J N3 N3 N 0 1 Y N N 11.794 -35.017 -3.190 -8.048 -1.305 0.744 N3 04J 8 04J C4 C4 C 0 1 Y N N 11.624 -35.161 -1.827 -6.732 -1.464 0.771 C4 04J 9 04J N5 N5 N 0 1 Y N N 12.535 -35.713 0.322 -4.594 -0.635 -0.078 N5 04J 10 04J C6 C6 C 0 1 Y N N 13.602 -36.130 1.097 -3.914 0.208 -0.825 C6 04J 11 04J C7 C7 C 0 1 Y N N 14.823 -36.408 0.495 -4.571 1.184 -1.574 C7 04J 12 04J N8 N8 N 0 1 Y N N 14.978 -36.264 -0.870 -5.883 1.282 -1.549 N8 04J 13 04J C9 C9 C 0 1 N N N 13.433 -36.280 2.592 -2.410 0.119 -0.871 C9 04J 14 04J CA CA C 0 1 N N S 21.984 -35.687 4.256 6.015 0.569 0.232 CA 04J 15 04J CB CB C 0 1 N N N 22.756 -35.922 2.958 6.668 -0.646 -0.431 CB 04J 16 04J CD CD C 0 1 N N N 23.300 -38.361 2.840 6.878 -3.115 -0.354 CD 04J 17 04J CG CG C 0 1 N N N 23.839 -36.983 3.142 6.235 -1.919 0.299 CG 04J 18 04J CT CT C 0 1 N N N 22.421 -34.404 4.911 6.536 1.831 -0.407 CT 04J 19 04J N10 N10 N 0 1 N N N 14.301 -37.314 3.127 -1.842 0.870 0.252 N10 04J 20 04J C11 C11 C 0 1 Y N N 18.384 -36.852 4.039 2.285 1.057 0.754 C11 04J 21 04J C12 C12 C 0 1 Y N N 17.806 -38.113 3.965 1.440 1.709 1.656 C12 04J 22 04J C13 C13 C 0 1 Y N N 16.457 -38.246 3.665 0.075 1.646 1.487 C13 04J 23 04J C14 C14 C 0 1 Y N N 15.677 -37.121 3.430 -0.463 0.932 0.420 C14 04J 24 04J C15 C15 C 0 1 Y N N 16.250 -35.854 3.509 0.377 0.281 -0.480 C15 04J 25 04J C16 C16 C 0 1 Y N N 17.606 -35.716 3.811 1.742 0.346 -0.320 C16 04J 26 04J C4A C4A C 0 1 Y N N 12.691 -35.576 -1.044 -5.920 -0.554 -0.040 C4A 04J 27 04J C8A C8A C 0 1 Y N N 13.915 -35.851 -1.642 -6.593 0.435 -0.799 C8A 04J 28 04J NA2 NA2 N 0 1 N N N 13.156 -35.154 -5.089 -9.990 -0.243 0.025 NA2 04J 29 04J NA4 NA4 N 0 1 N N N 10.445 -34.896 -1.266 -6.149 -2.450 1.536 NA4 04J 30 04J OE1 OE1 O 0 1 N N N 22.952 -38.662 1.678 7.607 -2.965 -1.306 OE1 04J 31 04J OE2 OE2 O 0 1 N N N 23.190 -39.215 3.747 6.640 -4.348 0.121 OE2 04J 32 04J HN HN H 0 1 N N N 20.116 -34.938 3.535 4.186 0.001 -0.685 HN 04J 33 04J HO2 HO2 H 0 1 N N N 22.052 -32.959 5.926 8.136 2.929 -0.795 HO2 04J 34 04J H7 H7 H 0 1 N N N 15.656 -36.739 1.098 -3.996 1.868 -2.181 H7 04J 35 04J H9 H9 H 0 1 N N N 13.677 -35.323 3.077 -2.105 -0.925 -0.801 H9 04J 36 04J H9A H9A H 0 1 N N N 12.387 -36.544 2.808 -2.049 0.541 -1.809 H9A 04J 37 04J HA HA H 0 1 N N N 22.226 -36.514 4.940 6.255 0.575 1.295 HA 04J 38 04J HB HB H 0 1 N N N 22.055 -36.257 2.179 6.357 -0.701 -1.474 HB 04J 39 04J HBA HBA H 0 1 N N N 23.228 -34.979 2.646 7.752 -0.548 -0.380 HBA 04J 40 04J HG HG H 0 1 N N N 24.675 -36.766 2.461 6.546 -1.863 1.342 HG 04J 41 04J HGA HGA H 0 1 N N N 24.197 -36.956 4.182 5.151 -2.016 0.248 HGA 04J 42 04J HN10 HN10 H 0 0 N N N 13.875 -37.610 3.982 -2.428 1.323 0.879 HN10 04J 43 04J H12 H12 H 0 1 N N N 18.408 -38.992 4.141 1.857 2.262 2.485 H12 04J 44 04J H13 H13 H 0 1 N N N 16.012 -39.229 3.614 -0.578 2.150 2.184 H13 04J 45 04J H15 H15 H 0 1 N N N 15.644 -34.977 3.336 -0.044 -0.272 -1.307 H15 04J 46 04J H16 H16 H 0 1 N N N 18.051 -34.734 3.868 2.392 -0.160 -1.018 H16 04J 47 04J HNA2 HNA2 H 0 0 N N N 14.091 -35.395 -5.349 -10.429 0.442 -0.502 HNA2 04J 48 04J HNAA HNAA H 0 0 N N N 12.513 -35.758 -5.560 -10.518 -0.851 0.566 HNAA 04J 49 04J HNA4 HNA4 H 0 0 N N N 9.797 -34.606 -1.971 -6.703 -3.043 2.067 HNA4 04J 50 04J HNAB HNAB H 0 0 N N N 10.099 -35.718 -0.813 -5.184 -2.551 1.543 HNAB 04J 51 04J HOE2 HOE2 H 0 0 N N N 22.833 -40.018 3.385 7.075 -5.084 -0.331 HOE2 04J 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 04J N C SING N N 1 04J C11 C SING N N 2 04J C O DOUB N N 3 04J N CA SING N N 4 04J N HN SING N N 5 04J C2 N1 DOUB Y N 6 04J N1 C8A SING Y N 7 04J O1 CT DOUB N N 8 04J NA2 C2 SING N N 9 04J C2 N3 SING Y N 10 04J CT O2 SING N N 11 04J O2 HO2 SING N N 12 04J N3 C4 DOUB Y N 13 04J C4 NA4 SING N N 14 04J C4 C4A SING Y N 15 04J C4A N5 SING Y N 16 04J N5 C6 DOUB Y N 17 04J C7 C6 SING Y N 18 04J C6 C9 SING N N 19 04J N8 C7 DOUB Y N 20 04J C7 H7 SING N N 21 04J C8A N8 SING Y N 22 04J C9 N10 SING N N 23 04J C9 H9 SING N N 24 04J C9 H9A SING N N 25 04J CB CA SING N N 26 04J CA CT SING N N 27 04J CA HA SING N N 28 04J CB CG SING N N 29 04J CB HB SING N N 30 04J CB HBA SING N N 31 04J OE1 CD DOUB N N 32 04J CD CG SING N N 33 04J CD OE2 SING N N 34 04J CG HG SING N N 35 04J CG HGA SING N N 36 04J N10 C14 SING N N 37 04J N10 HN10 SING N N 38 04J C16 C11 DOUB Y N 39 04J C12 C11 SING Y N 40 04J C13 C12 DOUB Y N 41 04J C12 H12 SING N N 42 04J C14 C13 SING Y N 43 04J C13 H13 SING N N 44 04J C14 C15 DOUB Y N 45 04J C15 C16 SING Y N 46 04J C15 H15 SING N N 47 04J C16 H16 SING N N 48 04J C8A C4A DOUB Y N 49 04J NA2 HNA2 SING N N 50 04J NA2 HNAA SING N N 51 04J NA4 HNA4 SING N N 52 04J NA4 HNAB SING N N 53 04J OE2 HOE2 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 04J SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)c1ccc(cc1)NCc2nc3c(nc2)nc(nc3N)N)CCC(=O)O" 04J InChI InChI 1.03 "InChI=1S/C19H20N8O5/c20-15-14-16(27-19(21)26-15)23-8-11(24-14)7-22-10-3-1-9(2-4-10)17(30)25-12(18(31)32)5-6-13(28)29/h1-4,8,12,22H,5-7H2,(H,25,30)(H,28,29)(H,31,32)(H4,20,21,23,26,27)/t12-/m0/s1" 04J InChIKey InChI 1.03 TVZGACDUOSZQKY-LBPRGKRZSA-N 04J SMILES_CANONICAL CACTVS 3.370 "Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cnc2n1" 04J SMILES CACTVS 3.370 "Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cnc2n1" 04J SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cnc3c(n2)c(nc(n3)N)N" 04J SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCc2cnc3c(n2)c(nc(n3)N)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 04J "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid" 04J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[4-[[2,4-bis(azanyl)pteridin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 04J "Create component" 2011-11-23 RCSB 04J "Modify name" 2012-01-19 RCSB 04J "Initial release" 2013-08-07 RCSB 04J "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 04J _pdbx_chem_comp_synonyms.name "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##