data_05C # _chem_comp.id 05C _chem_comp.name "7-(8-methylnaphthalen-1-yl)-4-[(2~{R})-2-methylpiperazin-1-yl]-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-01 _chem_comp.pdbx_modified_date 2021-12-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.652 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EW9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05C C10 C1 C 0 1 Y N N -4.276 -14.661 13.124 3.727 -0.720 -0.816 C10 05C 1 05C C13 C2 C 0 1 N N N -2.310 -14.276 9.767 1.294 2.030 -0.772 C13 05C 2 05C C15 C3 C 0 1 Y N N -1.660 -12.468 11.391 0.114 -0.162 -0.397 C15 05C 3 05C C20 C4 C 0 1 N N N 1.406 -9.018 10.373 -3.113 -2.335 0.426 C20 05C 4 05C C21 C5 C 0 1 N N S 1.791 -7.586 10.935 -4.466 -2.971 0.754 C21 05C 5 05C C22 C6 C 0 1 N N N 2.544 -7.703 12.049 -4.303 -4.496 0.919 C22 05C 6 05C C24 C7 C 0 1 N N N 0.601 -6.701 12.852 -5.813 -4.064 -0.900 C24 05C 7 05C C26 C8 C 0 1 N N N 0.603 -5.851 10.879 -6.577 -1.981 0.088 C26 05C 8 05C C28 C9 C 0 1 Y N N -0.505 -12.406 9.323 -1.150 1.855 -0.243 C28 05C 9 05C C01 C10 C 0 1 N N N -1.449 -15.855 13.841 3.296 0.345 1.841 C01 05C 10 05C C02 C11 C 0 1 Y N N -2.660 -15.996 14.658 4.559 -0.388 1.468 C02 05C 11 05C C03 C12 C 0 1 Y N N -2.501 -16.730 15.820 5.544 -0.569 2.392 C03 05C 12 05C C04 C13 C 0 1 Y N N -3.561 -16.945 16.681 6.718 -1.244 2.065 C04 05C 13 05C C05 C14 C 0 1 Y N N -4.818 -16.414 16.382 6.914 -1.742 0.813 C05 05C 14 05C C06 C15 C 0 1 Y N N -5.000 -15.675 15.199 5.920 -1.575 -0.166 C06 05C 15 05C C07 C16 C 0 1 Y N N -6.333 -15.146 14.934 6.088 -2.076 -1.468 C07 05C 16 05C C08 C17 C 0 1 Y N N -6.616 -14.384 13.768 5.108 -1.900 -2.397 C08 05C 17 05C C09 C18 C 0 1 Y N N -5.592 -14.139 12.887 3.932 -1.227 -2.081 C09 05C 18 05C C12 C19 C 0 1 N N N -3.602 -14.410 10.703 2.381 1.138 -1.374 C12 05C 19 05C C14 C20 C 0 1 Y N N -1.470 -13.014 10.204 0.071 1.210 -0.466 C14 05C 20 05C C16 C21 C 0 1 N N N -2.644 -12.987 12.408 1.387 -0.930 -0.631 C16 05C 21 05C C18 C22 C 0 1 Y N N -0.081 -10.837 10.969 -2.142 -0.195 0.090 C18 05C 22 05C C23 C23 C 0 1 N N N 1.657 -7.342 13.268 -5.594 -5.058 0.267 C23 05C 23 05C C30 C24 C 0 1 N N N 0.567 -12.107 6.975 -2.316 3.655 -1.211 C30 05C 24 05C C31 C25 C 0 1 N N N 0.391 -12.614 5.523 -2.327 5.182 -1.314 C31 05C 25 05C C33 C26 C 0 1 N N N 0.302 -14.936 6.351 -1.433 5.340 0.929 C33 05C 26 05C C34 C27 C 0 1 N N R 0.189 -14.396 7.813 -1.421 3.813 1.033 C34 05C 27 05C C35 C28 C 0 1 N N N 1.533 -14.584 8.532 -2.751 3.332 1.617 C35 05C 28 05C C36 C29 C 0 1 Y N N -3.964 -15.445 14.328 4.726 -0.888 0.168 C36 05C 29 05C N11 N1 N 0 1 N N N -3.260 -14.269 12.091 2.548 -0.043 -0.512 N11 05C 30 05C N17 N2 N 0 1 Y N N -0.968 -11.372 11.790 -1.002 -0.830 -0.118 N17 05C 31 05C N25 N3 N 0 1 N N N 0.580 -6.805 11.316 -5.408 -2.750 -0.358 N25 05C 32 05C N27 N4 N 0 1 Y N N 0.145 -11.337 9.760 -2.225 1.123 0.030 N27 05C 33 05C N29 N5 N 0 1 N N N -0.234 -12.955 7.955 -1.237 3.236 -0.306 N29 05C 34 05C N32 N6 N 0 1 N N N 0.664 -13.999 5.310 -2.512 5.760 0.024 N32 05C 35 05C O19 O1 O 0 1 N N N 0.638 -9.669 11.402 -3.255 -0.914 0.372 O19 05C 36 05C H1 H1 H 0 1 N N N -2.627 -14.161 8.720 1.665 2.484 0.147 H1 05C 37 05C H2 H2 H 0 1 N N N -1.691 -15.180 9.865 1.035 2.815 -1.483 H2 05C 38 05C H3 H3 H 0 1 N N N 0.805 -8.918 9.457 -2.390 -2.599 1.197 H3 05C 39 05C H4 H4 H 0 1 N N N 2.315 -9.597 10.154 -2.765 -2.702 -0.540 H4 05C 40 05C H5 H5 H 0 1 N N N 2.333 -7.047 10.144 -4.866 -2.537 1.671 H5 05C 41 05C H6 H6 H 0 1 N N N 2.909 -8.736 12.146 -3.418 -4.849 0.388 H6 05C 42 05C H7 H7 H 0 1 N N N 3.401 -7.015 11.994 -4.254 -4.767 1.974 H7 05C 43 05C H8 H8 H 0 1 N N N 0.656 -5.646 13.157 -5.186 -4.333 -1.751 H8 05C 44 05C H9 H9 H 0 1 N N N -0.307 -7.158 13.273 -6.862 -4.048 -1.194 H9 05C 45 05C H10 H10 H 0 1 N N N -0.298 -5.291 11.172 -6.252 -1.013 0.468 H10 05C 46 05C H11 H11 H 0 1 N N N 1.498 -5.312 11.223 -7.256 -1.832 -0.752 H11 05C 47 05C H12 H12 H 0 1 N N N 0.633 -5.950 9.784 -7.092 -2.528 0.878 H12 05C 48 05C H13 H13 H 0 1 N N N -0.902 -14.951 14.148 3.373 1.385 1.525 H13 05C 49 05C H14 H14 H 0 1 N N N -0.807 -16.737 13.982 2.445 -0.124 1.347 H14 05C 50 05C H15 H15 H 0 1 N N N -1.730 -15.772 12.781 3.158 0.303 2.921 H15 05C 51 05C H16 H16 H 0 1 N N N -1.532 -17.142 16.059 5.412 -0.183 3.392 H16 05C 52 05C H17 H17 H 0 1 N N N -3.418 -17.522 17.583 7.484 -1.373 2.815 H17 05C 53 05C H18 H18 H 0 1 N N N -5.647 -16.570 17.056 7.829 -2.263 0.573 H18 05C 54 05C H19 H19 H 0 1 N N N -7.126 -15.338 15.642 6.994 -2.601 -1.732 H19 05C 55 05C H20 H20 H 0 1 N N N -7.611 -14.008 13.580 5.247 -2.289 -3.395 H20 05C 56 05C H21 H21 H 0 1 N N N -5.779 -13.546 12.004 3.170 -1.101 -2.836 H21 05C 57 05C H22 H22 H 0 1 N N N -4.324 -13.626 10.431 2.084 0.823 -2.374 H22 05C 58 05C H23 H23 H 0 1 N N N -4.057 -15.399 10.545 3.320 1.690 -1.425 H23 05C 59 05C H24 H24 H 0 1 N N N -2.115 -13.093 13.367 1.466 -1.730 0.105 H24 05C 60 05C H25 H25 H 0 1 N N N -3.447 -12.242 12.513 1.368 -1.363 -1.632 H25 05C 61 05C H26 H26 H 0 1 N N N 1.349 -8.263 13.785 -5.434 -6.070 -0.106 H26 05C 62 05C H27 H27 H 0 1 N N N 2.225 -6.705 13.961 -6.429 -5.029 0.967 H27 05C 63 05C H28 H28 H 0 1 N N N 1.632 -12.156 7.246 -3.273 3.310 -0.820 H28 05C 64 05C H29 H29 H 0 1 N N N 0.221 -11.065 7.036 -2.150 3.225 -2.199 H29 05C 65 05C H30 H30 H 0 1 N N N 1.068 -12.034 4.879 -1.380 5.526 -1.731 H30 05C 66 05C H31 H31 H 0 1 N N N -0.651 -12.426 5.224 -3.145 5.497 -1.962 H31 05C 67 05C H32 H32 H 0 1 N N N -0.676 -15.362 6.083 -1.599 5.770 1.917 H32 05C 68 05C H33 H33 H 0 1 N N N 1.061 -15.732 6.354 -0.475 5.686 0.539 H33 05C 69 05C H34 H34 H 0 1 N N N -0.554 -15.018 8.333 -0.604 3.499 1.681 H34 05C 70 05C H35 H35 H 0 1 N N N 1.455 -14.204 9.561 -3.568 3.646 0.968 H35 05C 71 05C H36 H36 H 0 1 N N N 1.790 -15.653 8.554 -2.743 2.244 1.690 H36 05C 72 05C H37 H37 H 0 1 N N N 2.317 -14.029 7.995 -2.889 3.761 2.609 H37 05C 73 05C H39 H39 H 0 1 N N N 0.176 -14.273 4.482 -2.575 6.766 -0.021 H39 05C 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05C N32 C31 SING N N 1 05C N32 C33 SING N N 2 05C C31 C30 SING N N 3 05C C33 C34 SING N N 4 05C C30 N29 SING N N 5 05C C34 N29 SING N N 6 05C C34 C35 SING N N 7 05C N29 C28 SING N N 8 05C C28 N27 DOUB Y N 9 05C C28 C14 SING Y N 10 05C N27 C18 SING Y N 11 05C C13 C14 SING N N 12 05C C13 C12 SING N N 13 05C C14 C15 DOUB Y N 14 05C C20 C21 SING N N 15 05C C20 O19 SING N N 16 05C C12 N11 SING N N 17 05C C26 N25 SING N N 18 05C C21 N25 SING N N 19 05C C21 C22 SING N N 20 05C C18 O19 SING N N 21 05C C18 N17 DOUB Y N 22 05C N25 C24 SING N N 23 05C C15 N17 SING Y N 24 05C C15 C16 SING N N 25 05C C22 C23 SING N N 26 05C N11 C16 SING N N 27 05C N11 C10 SING N N 28 05C C24 C23 SING N N 29 05C C09 C10 DOUB Y N 30 05C C09 C08 SING Y N 31 05C C10 C36 SING Y N 32 05C C08 C07 DOUB Y N 33 05C C01 C02 SING N N 34 05C C36 C02 DOUB Y N 35 05C C36 C06 SING Y N 36 05C C02 C03 SING Y N 37 05C C07 C06 SING Y N 38 05C C06 C05 DOUB Y N 39 05C C03 C04 DOUB Y N 40 05C C05 C04 SING Y N 41 05C C13 H1 SING N N 42 05C C13 H2 SING N N 43 05C C20 H3 SING N N 44 05C C20 H4 SING N N 45 05C C21 H5 SING N N 46 05C C22 H6 SING N N 47 05C C22 H7 SING N N 48 05C C24 H8 SING N N 49 05C C24 H9 SING N N 50 05C C26 H10 SING N N 51 05C C26 H11 SING N N 52 05C C26 H12 SING N N 53 05C C01 H13 SING N N 54 05C C01 H14 SING N N 55 05C C01 H15 SING N N 56 05C C03 H16 SING N N 57 05C C04 H17 SING N N 58 05C C05 H18 SING N N 59 05C C07 H19 SING N N 60 05C C08 H20 SING N N 61 05C C09 H21 SING N N 62 05C C12 H22 SING N N 63 05C C12 H23 SING N N 64 05C C16 H24 SING N N 65 05C C16 H25 SING N N 66 05C C23 H26 SING N N 67 05C C23 H27 SING N N 68 05C C30 H28 SING N N 69 05C C30 H29 SING N N 70 05C C31 H30 SING N N 71 05C C31 H31 SING N N 72 05C C33 H32 SING N N 73 05C C33 H33 SING N N 74 05C C34 H34 SING N N 75 05C C35 H35 SING N N 76 05C C35 H36 SING N N 77 05C C35 H37 SING N N 78 05C N32 H39 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05C InChI InChI 1.03 "InChI=1S/C29H38N6O/c1-20-7-4-8-22-9-5-11-26(27(20)22)34-15-12-24-25(18-34)31-29(36-19-23-10-6-14-33(23)3)32-28(24)35-16-13-30-17-21(35)2/h4-5,7-9,11,21,23,30H,6,10,12-19H2,1-3H3/t21-,23+/m1/s1" 05C InChIKey InChI 1.03 UAZYYGRPOMNMMP-GGAORHGYSA-N 05C SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CNCCN1c2nc(OC[C@@H]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(C)c56" 05C SMILES CACTVS 3.385 "C[CH]1CNCCN1c2nc(OC[CH]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(C)c56" 05C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CCNC[C@H]5C)OC[C@@H]6CCCN6C)C3" 05C SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CCNCC5C)OCC6CCCN6C)C3" # _pdbx_chem_comp_identifier.comp_id 05C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-(8-methylnaphthalen-1-yl)-4-[(2~{R})-2-methylpiperazin-1-yl]-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05C "Create component" 2021-06-01 PDBJ 05C "Initial release" 2021-12-29 RCSB ##