data_05F # _chem_comp.id 05F _chem_comp.name "4-[(1~{R},5~{S})-3,8-diazabicyclo[3.2.1]octan-8-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-01 _chem_comp.pdbx_modified_date 2021-12-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EWA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05F C14 C1 C 0 1 Y N N -2.234 -13.058 10.112 0.121 1.136 -0.409 C14 05F 1 05F C10 C2 C 0 1 Y N N -4.938 -14.617 13.150 3.859 -0.619 -0.814 C10 05F 2 05F C12 C3 C 0 1 N N N -4.311 -14.526 10.663 2.428 1.188 -1.328 C12 05F 3 05F C13 C4 C 0 1 N N N -3.080 -14.304 9.692 1.304 2.017 -0.703 C13 05F 4 05F C01 C5 C 0 1 N N N -2.079 -15.846 13.717 3.396 0.372 1.866 C01 05F 5 05F C02 C6 C 0 1 Y N N -3.293 -15.937 14.633 4.689 -0.296 1.472 C02 05F 6 05F C03 C7 C 0 1 Y N N -3.098 -16.643 15.814 5.686 -0.450 2.387 C03 05F 7 05F C04 C8 C 0 1 Y N N -4.134 -16.807 16.745 6.887 -1.065 2.040 C04 05F 8 05F C05 C9 C 0 1 Y N N -5.393 -16.262 16.496 7.098 -1.528 0.778 C05 05F 9 05F C06 C10 C 0 1 Y N N -5.606 -15.539 15.284 6.092 -1.387 -0.192 C06 05F 10 05F C07 C11 C 0 1 Y N N -6.906 -15.002 15.082 6.275 -1.854 -1.505 C07 05F 11 05F C08 C12 C 0 1 Y N N -7.207 -14.281 13.936 5.283 -1.703 -2.425 C08 05F 12 05F C09 C13 C 0 1 Y N N -6.212 -14.093 12.985 4.079 -1.090 -2.091 C09 05F 13 05F C15 C14 C 0 1 Y N N -2.491 -12.479 11.292 0.227 -0.234 -0.366 C15 05F 14 05F C16 C15 C 0 1 N N N -3.535 -12.926 12.270 1.532 -0.938 -0.623 C16 05F 15 05F C18 C16 C 0 1 Y N N -0.855 -10.857 10.976 -2.023 -0.378 0.130 C18 05F 16 05F C20 C17 C 0 1 N N N 0.690 -9.015 10.489 -2.894 -2.566 0.428 C20 05F 17 05F C21 C18 C 0 1 N N S 0.987 -7.572 11.045 -4.214 -3.269 0.750 C21 05F 18 05F C22 C19 C 0 1 N N N 1.744 -7.656 12.396 -3.981 -4.788 0.886 C22 05F 19 05F C23 C20 C 0 1 N N N 1.189 -6.804 13.151 -5.248 -5.396 0.228 C23 05F 20 05F C24 C21 C 0 1 N N N -0.344 -6.697 12.632 -5.517 -4.391 -0.920 C24 05F 21 05F C26 C22 C 0 1 N N N -0.271 -5.744 10.814 -6.372 -2.364 0.109 C26 05F 22 05F C28 C23 C 0 1 Y N N -1.181 -12.481 9.282 -1.126 1.721 -0.166 C28 05F 23 05F C30 C24 C 0 1 N N R -0.217 -14.178 7.913 -1.710 3.622 1.121 C30 05F 24 05F C31 C25 C 0 1 N N N 1.213 -13.738 8.239 -3.211 3.256 1.194 C31 05F 25 05F C32 C26 C 0 1 N N N 1.252 -12.397 7.448 -3.666 3.167 -0.278 C32 05F 26 05F C33 C27 C 0 1 N N S -0.237 -12.211 7.116 -2.396 3.489 -1.101 C33 05F 27 05F C34 C28 C 0 1 N N N -0.646 -12.475 5.716 -2.324 5.016 -1.268 C34 05F 28 05F C36 C29 C 0 1 N N N -0.447 -14.951 6.658 -1.608 5.155 1.051 C36 05F 29 05F C37 C30 C 0 1 Y N N -4.604 -15.362 14.352 4.871 -0.761 0.161 C37 05F 30 05F N11 N1 N 0 1 N N N -4.003 -14.279 12.090 2.653 -0.002 -0.491 N11 05F 31 05F N17 N2 N 0 1 Y N N -1.800 -11.366 11.744 -0.855 -0.956 -0.094 N17 05F 32 05F N25 N3 N 0 1 N N N -0.301 -6.819 11.350 -5.170 -3.070 -0.355 N25 05F 33 05F N27 N4 N 0 1 Y N N -0.548 -11.394 9.774 -2.164 0.937 0.101 N27 05F 34 05F N29 N5 N 0 1 N N N -0.749 -13.029 7.934 -1.275 3.098 -0.202 N29 05F 35 05F N35 N6 N 0 1 N N N -0.330 -14.012 5.345 -2.549 5.651 0.037 N35 05F 36 05F O19 O1 O 0 1 N N N -0.132 -9.688 11.457 -3.100 -1.152 0.402 O19 05F 37 05F H1 H1 H 0 1 N N N -5.118 -13.843 10.360 2.140 0.879 -2.332 H1 05F 38 05F H2 H2 H 0 1 N N N -4.652 -15.567 10.558 3.342 1.780 -1.375 H2 05F 39 05F H3 H3 H 0 1 N N N -3.455 -14.153 8.669 1.007 2.804 -1.396 H3 05F 40 05F H4 H4 H 0 1 N N N -2.438 -15.197 9.719 1.660 2.468 0.224 H4 05F 41 05F H5 H5 H 0 1 N N N -1.496 -14.947 13.968 3.424 1.421 1.570 H5 05F 42 05F H6 H6 H 0 1 N N N -1.451 -16.739 13.851 2.564 -0.124 1.367 H6 05F 43 05F H7 H7 H 0 1 N N N -2.413 -15.786 12.671 3.266 0.302 2.946 H7 05F 44 05F H8 H8 H 0 1 N N N -2.129 -17.074 16.019 5.543 -0.091 3.395 H8 05F 45 05F H9 H9 H 0 1 N N N -3.956 -17.357 17.657 7.662 -1.174 2.784 H9 05F 46 05F H10 H10 H 0 1 N N N -6.195 -16.385 17.209 8.035 -2.002 0.524 H10 05F 47 05F H11 H11 H 0 1 N N N -7.669 -15.157 15.830 7.202 -2.332 -1.784 H11 05F 48 05F H12 H12 H 0 1 N N N -8.196 -13.874 13.786 5.433 -2.066 -3.432 H12 05F 49 05F H13 H13 H 0 1 N N N -6.436 -13.524 12.094 3.308 -0.984 -2.839 H13 05F 50 05F H14 H14 H 0 1 N N N -3.112 -12.844 13.282 1.652 -1.748 0.097 H14 05F 51 05F H15 H15 H 0 1 N N N -4.399 -12.251 12.178 1.526 -1.350 -1.632 H15 05F 52 05F H16 H16 H 0 1 N N N 0.159 -8.946 9.528 -2.156 -2.811 1.193 H16 05F 53 05F H17 H17 H 0 1 N N N 1.632 -9.565 10.348 -2.533 -2.899 -0.545 H17 05F 54 05F H18 H18 H 0 1 N N N 1.590 -7.013 10.314 -4.630 -2.871 1.676 H18 05F 55 05F H19 H19 H 0 1 N N N 1.654 -8.665 12.824 -3.084 -5.090 0.345 H19 05F 56 05F H20 H20 H 0 1 N N N 2.807 -7.410 12.256 -3.916 -5.076 1.935 H20 05F 57 05F H21 H21 H 0 1 N N N 1.218 -7.142 14.198 -5.044 -6.392 -0.165 H21 05F 58 05F H22 H22 H 0 1 N N N 1.692 -5.830 13.066 -6.081 -5.418 0.931 H22 05F 59 05F H23 H23 H 0 1 N N N -0.772 -5.722 12.908 -4.883 -4.616 -1.777 H23 05F 60 05F H24 H24 H 0 1 N N N -0.952 -7.502 13.071 -6.568 -4.418 -1.209 H24 05F 61 05F H25 H25 H 0 1 N N N -1.201 -5.198 11.033 -6.090 -1.389 0.507 H25 05F 62 05F H26 H26 H 0 1 N N N 0.588 -5.170 11.191 -7.060 -2.231 -0.725 H26 05F 63 05F H27 H27 H 0 1 N N N -0.173 -5.879 9.727 -6.858 -2.948 0.891 H27 05F 64 05F H28 H28 H 0 1 N N N -0.570 -14.792 8.755 -1.138 3.197 1.946 H28 05F 65 05F H29 H29 H 0 1 N N N 1.959 -14.456 7.867 -3.344 2.295 1.691 H29 05F 66 05F H30 H30 H 0 1 N N N 1.359 -13.583 9.318 -3.767 4.033 1.719 H30 05F 67 05F H31 H31 H 0 1 N N N 1.862 -12.483 6.537 -4.022 2.163 -0.506 H31 05F 68 05F H32 H32 H 0 1 N N N 1.634 -11.573 8.068 -4.446 3.901 -0.479 H32 05F 69 05F H33 H33 H 0 1 N N N -0.505 -11.173 7.363 -2.371 2.957 -2.052 H33 05F 70 05F H34 H34 H 0 1 N N N -0.087 -11.812 5.039 -1.340 5.295 -1.645 H34 05F 71 05F H35 H35 H 0 1 N N N -1.724 -12.286 5.607 -3.090 5.342 -1.972 H35 05F 72 05F H36 H36 H 0 1 N N N -1.454 -15.393 6.691 -1.859 5.582 2.022 H36 05F 73 05F H37 H37 H 0 1 N N N 0.303 -15.753 6.591 -0.592 5.441 0.779 H37 05F 74 05F H39 H39 H 0 1 N N N -0.985 -14.325 4.657 -2.505 6.656 -0.037 H39 05F 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05F N35 C34 SING N N 1 05F N35 C36 SING N N 2 05F C34 C33 SING N N 3 05F C36 C30 SING N N 4 05F C33 C32 SING N N 5 05F C33 N29 SING N N 6 05F C32 C31 SING N N 7 05F C30 N29 SING N N 8 05F C30 C31 SING N N 9 05F N29 C28 SING N N 10 05F C28 N27 DOUB Y N 11 05F C28 C14 SING Y N 12 05F C13 C14 SING N N 13 05F C13 C12 SING N N 14 05F N27 C18 SING Y N 15 05F C14 C15 DOUB Y N 16 05F C20 C21 SING N N 17 05F C20 O19 SING N N 18 05F C12 N11 SING N N 19 05F C26 N25 SING N N 20 05F C18 O19 SING N N 21 05F C18 N17 DOUB Y N 22 05F C21 N25 SING N N 23 05F C21 C22 SING N N 24 05F C15 N17 SING Y N 25 05F C15 C16 SING N N 26 05F N25 C24 SING N N 27 05F N11 C16 SING N N 28 05F N11 C10 SING N N 29 05F C22 C23 SING N N 30 05F C24 C23 SING N N 31 05F C09 C10 DOUB Y N 32 05F C09 C08 SING Y N 33 05F C10 C37 SING Y N 34 05F C01 C02 SING N N 35 05F C08 C07 DOUB Y N 36 05F C37 C02 DOUB Y N 37 05F C37 C06 SING Y N 38 05F C02 C03 SING Y N 39 05F C07 C06 SING Y N 40 05F C06 C05 DOUB Y N 41 05F C03 C04 DOUB Y N 42 05F C05 C04 SING Y N 43 05F C12 H1 SING N N 44 05F C12 H2 SING N N 45 05F C13 H3 SING N N 46 05F C13 H4 SING N N 47 05F C01 H5 SING N N 48 05F C01 H6 SING N N 49 05F C01 H7 SING N N 50 05F C03 H8 SING N N 51 05F C04 H9 SING N N 52 05F C05 H10 SING N N 53 05F C07 H11 SING N N 54 05F C08 H12 SING N N 55 05F C09 H13 SING N N 56 05F C16 H14 SING N N 57 05F C16 H15 SING N N 58 05F C20 H16 SING N N 59 05F C20 H17 SING N N 60 05F C21 H18 SING N N 61 05F C22 H19 SING N N 62 05F C22 H20 SING N N 63 05F C23 H21 SING N N 64 05F C23 H22 SING N N 65 05F C24 H23 SING N N 66 05F C24 H24 SING N N 67 05F C26 H25 SING N N 68 05F C26 H26 SING N N 69 05F C26 H27 SING N N 70 05F C30 H28 SING N N 71 05F C31 H29 SING N N 72 05F C31 H30 SING N N 73 05F C32 H31 SING N N 74 05F C32 H32 SING N N 75 05F C33 H33 SING N N 76 05F C34 H34 SING N N 77 05F C34 H35 SING N N 78 05F C36 H36 SING N N 79 05F C36 H37 SING N N 80 05F N35 H39 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05F InChI InChI 1.03 "InChI=1S/C30H38N6O/c1-20-6-3-7-21-8-4-10-27(28(20)21)35-15-13-25-26(18-35)32-30(37-19-24-9-5-14-34(24)2)33-29(25)36-22-11-12-23(36)17-31-16-22/h3-4,6-8,10,22-24,31H,5,9,11-19H2,1-2H3/t22-,23+,24-/m0/s1" 05F InChIKey InChI 1.03 PDTKGMUEAPACDB-VXNXHJTFSA-N 05F SMILES_CANONICAL CACTVS 3.385 "CN1CCC[C@H]1COc2nc3CN(CCc3c(n2)N4[C@@H]5CC[C@H]4CNC5)c6cccc7cccc(C)c67" 05F SMILES CACTVS 3.385 "CN1CCC[CH]1COc2nc3CN(CCc3c(n2)N4[CH]5CC[CH]4CNC5)c6cccc7cccc(C)c67" 05F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5[C@@H]6CC[C@H]5CNC6)OC[C@@H]7CCCN7C)C3" 05F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5C6CCC5CNC6)OCC7CCCN7C)C3" # _pdbx_chem_comp_identifier.comp_id 05F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(1~{R},5~{S})-3,8-diazabicyclo[3.2.1]octan-8-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05F "Create component" 2021-06-01 PDBJ 05F "Initial release" 2021-12-29 RCSB ##