data_060 # _chem_comp.id 060 _chem_comp.name S-methyl-D-cysteine _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H9 N O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-01-25 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 135.185 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 060 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZKY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 060 CS C C 0 1 N N N N N N 4.664 39.201 1.573 3.291 0.769 0.613 C 060 1 060 N N N 0 1 N N N Y Y N 7.749 38.174 4.998 -0.582 -1.771 -0.137 N 060 2 060 S S S 0 1 N N N N N N 6.196 39.413 2.550 2.092 -0.182 -0.361 S 060 3 060 C1 C1 C 0 1 N N N N N N 6.704 37.703 2.841 0.497 0.386 0.289 C1 060 4 060 CA C2 C 0 1 N N S Y N N 6.764 37.326 4.335 -0.637 -0.335 -0.443 C2 060 5 060 OXT O4 O 0 1 N Y N Y N Y 5.285 38.253 6.016 -2.412 1.380 -0.503 O4 060 6 060 O O5 O 0 1 N N N Y N Y 4.449 36.693 4.673 -2.619 -0.368 0.832 O5 060 7 060 C C13 C 0 1 N N N Y N Y 5.443 37.444 5.104 -1.962 0.224 0.009 C13 060 8 060 HCS1 H H 0 1 N N N N N N 4.246 40.188 1.326 3.164 0.540 1.671 H 060 9 060 HCS2 HA H 0 1 N N N N N N 4.894 38.657 0.645 4.302 0.505 0.303 HA 060 10 060 HB HB H 0 1 N N N N N N 3.931 38.629 2.161 3.128 1.835 0.450 HB 060 11 060 H HN H 0 1 N N N Y Y N 7.795 37.936 5.968 0.269 -2.183 -0.488 HN 060 12 060 H1 H1 H 0 1 N N N N N N 5.985 37.036 2.342 0.439 0.166 1.355 H1 060 13 060 H1A H1A H 0 1 N N N N N N 7.703 37.557 2.405 0.403 1.461 0.134 H1A 060 14 060 HA H2 H 0 1 N N N Y N N 7.098 36.280 4.401 -0.528 -0.188 -1.517 H2 060 15 060 HXT HO4 H 0 1 N Y N Y N Y 4.383 38.223 6.313 -3.267 1.699 -0.183 HO4 060 16 060 H2 H3 H 0 1 N Y N Y Y N 8.646 38.034 4.578 -0.681 -1.934 0.854 H3 060 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 060 CS S SING N N 1 060 CS HCS1 SING N N 2 060 CS HCS2 SING N N 3 060 CS HB SING N N 4 060 CA N SING N N 5 060 N H SING N N 6 060 S C1 SING N N 7 060 C1 CA SING N N 8 060 C1 H1 SING N N 9 060 C1 H1A SING N N 10 060 CA C SING N N 11 060 CA HA SING N N 12 060 C OXT SING N N 13 060 OXT HXT SING N N 14 060 O C DOUB N N 15 060 N H2 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 060 SMILES ACDLabs 12.01 "O=C(O)C(N)CSC" 060 InChI InChI 1.03 "InChI=1S/C4H9NO2S/c1-8-2-3(5)4(6)7/h3H,2,5H2,1H3,(H,6,7)/t3-/m1/s1" 060 InChIKey InChI 1.03 IDIDJDIHTAOVLG-GSVOUGTGSA-N 060 SMILES_CANONICAL CACTVS 3.385 "CSC[C@@H](N)C(O)=O" 060 SMILES CACTVS 3.385 "CSC[CH](N)C(O)=O" 060 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CSC[C@H](C(=O)O)N" 060 SMILES "OpenEye OEToolkits" 1.9.2 "CSCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 060 "SYSTEMATIC NAME" ACDLabs 12.01 S-methyl-D-cysteine 060 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-3-methylsulfanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 060 "Create component" 2013-01-25 EBI 060 "Initial release" 2013-03-20 RCSB 060 "Modify descriptor" 2014-09-05 RCSB 060 "Modify backbone" 2023-11-03 PDBE #