data_062
#
_chem_comp.id 062
_chem_comp.name "3-AZA-9-HYDROXY-9-FLUORENYLCARBONYL-L-PROLYL-2-AMINOMETHYL-5-CHLOROBENZYLAMIDE, N-OXIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H25 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-05-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 492.954
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 062
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZRB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
062 N1 N1 N 1 1 Y N N 21.697 -15.284 24.650 -4.862 1.453 2.416 N1 062 1
062 C2 C2 C 0 1 Y N N 21.532 -16.318 23.691 -4.908 0.158 2.174 C2 062 2
062 C3 C3 C 0 1 Y N N 20.195 -16.478 23.192 -4.326 -0.366 1.021 C3 062 3
062 C4 C4 C 0 1 Y N N 19.209 -15.580 23.691 -3.700 0.509 0.132 C4 062 4
062 C5 C5 C 0 1 Y N N 19.394 -14.558 24.702 -3.672 1.856 0.427 C5 062 5
062 C6 C6 C 0 1 Y N N 20.730 -14.429 25.222 -4.272 2.300 1.593 C6 062 6
062 C10 C10 C 0 1 Y N N 19.544 -17.374 22.224 -4.228 -1.751 0.500 C10 062 7
062 C11 C11 C 0 1 Y N N 18.141 -17.004 22.173 -3.539 -1.743 -0.710 C11 062 8
062 C12 C12 C 0 1 N N R 17.885 -15.779 23.008 -3.165 -0.312 -1.012 C12 062 9
062 C13 C13 C 0 1 Y N N 20.005 -18.470 21.307 -4.692 -2.963 1.014 C13 062 10
062 C14 C14 C 0 1 Y N N 19.003 -19.076 20.407 -4.466 -4.136 0.325 C14 062 11
062 C15 C15 C 0 1 Y N N 17.578 -18.666 20.352 -3.781 -4.118 -0.877 C15 062 12
062 C16 C16 C 0 1 Y N N 17.155 -17.603 21.272 -3.319 -2.920 -1.393 C16 062 13
062 O21 O21 O 0 1 N N N 16.968 -16.054 24.021 -3.766 0.106 -2.240 O21 062 14
062 C22 C22 C 0 1 N N N 17.468 -14.488 22.219 -1.667 -0.173 -1.095 C22 062 15
062 N23 N23 N 0 1 N N N 18.165 -14.000 21.153 -1.122 0.856 -1.774 N23 062 16
062 C24 C24 C 0 1 N N S 17.573 -12.815 20.456 0.315 1.180 -1.838 C24 062 17
062 C25 C25 C 0 1 N N N 18.275 -12.782 19.093 0.368 2.693 -2.167 C25 062 18
062 C26 C26 C 0 1 N N N 19.640 -13.126 19.653 -0.831 2.843 -3.140 C26 062 19
062 C27 C27 C 0 1 N N N 19.476 -14.342 20.541 -1.863 1.845 -2.573 C27 062 20
062 C34 C34 C 0 1 N N N 16.052 -12.782 20.295 0.974 0.909 -0.510 C34 062 21
062 N36 N36 N 0 1 N N N 15.455 -11.590 20.494 2.292 0.636 -0.455 N36 062 22
062 C37 C37 C 0 1 N N N 14.011 -11.466 20.223 2.933 0.372 0.836 C37 062 23
062 C38 C38 C 0 1 Y N N 13.164 -11.415 21.463 4.399 0.097 0.623 C38 062 24
062 C41 C41 C 0 1 Y N N 13.176 -10.186 22.189 4.863 -1.205 0.610 C41 062 25
062 C42 C42 C 0 1 Y N N 12.268 -10.107 23.310 6.209 -1.458 0.414 C42 062 26
062 C43 C43 C 0 1 Y N N 11.373 -11.180 23.685 7.089 -0.407 0.227 C43 062 27
062 C44 C44 C 0 1 Y N N 11.386 -12.427 22.955 6.623 0.894 0.235 C44 062 28
062 C45 C45 C 0 1 Y N N 12.303 -12.501 21.847 5.278 1.146 0.430 C45 062 29
062 CL1 CL1 CL 0 0 N N N 12.283 -8.650 24.306 6.794 -3.092 0.405 CL1 062 30
062 C53 C53 C 0 1 N N N 12.276 -13.769 21.011 4.770 2.565 0.438 C53 062 31
062 N54 N54 N 0 1 N N N 13.225 -14.773 21.490 4.590 3.012 1.826 N54 062 32
062 O60 O60 O -1 1 N N N 22.883 -14.935 24.998 -5.463 1.952 3.598 O60 062 33
062 O63 O63 O 0 1 N N N 16.462 -13.890 22.594 -0.952 -0.987 -0.551 O63 062 34
062 O64 O64 O 0 1 N N N 15.432 -13.801 20.002 0.317 0.936 0.510 O64 062 35
062 H2 H2 H 0 1 N N N 22.375 -16.947 23.360 -5.400 -0.501 2.874 H2 062 36
062 H5 H5 H 0 1 N N N 18.568 -13.917 25.054 -3.192 2.554 -0.243 H5 062 37
062 H6 H6 H 0 1 N N N 20.998 -13.712 26.016 -4.258 3.354 1.831 H6 062 38
062 H13 H13 H 0 1 N N N 21.050 -18.820 21.294 -5.228 -2.982 1.952 H13 062 39
062 H14 H14 H 0 1 N N N 19.339 -19.883 19.735 -4.826 -5.073 0.724 H14 062 40
062 H15 H15 H 0 1 N N N 16.861 -19.132 19.655 -3.607 -5.039 -1.413 H15 062 41
062 H16 H16 H 0 1 N N N 16.107 -17.258 21.286 -2.784 -2.908 -2.332 H16 062 42
062 H21 H21 H 0 1 N N N 16.131 -16.179 23.589 -3.743 1.072 -2.248 H21 062 43
062 H24 H24 H 0 1 N N N 17.742 -11.914 21.091 0.799 0.603 -2.626 H24 062 44
062 H251 1H25 H 0 0 N N N 17.866 -13.422 18.276 0.220 3.293 -1.269 H251 062 45
062 H252 2H25 H 0 0 N N N 18.178 -11.858 18.475 1.306 2.953 -2.659 H252 062 46
062 H261 1H26 H 0 0 N N N 20.411 -13.267 18.860 -1.223 3.859 -3.115 H261 062 47
062 H262 2H26 H 0 0 N N N 20.123 -12.268 20.176 -0.542 2.564 -4.153 H262 062 48
062 H271 1H27 H 0 0 N N N 20.311 -14.554 21.247 -2.579 2.371 -1.942 H271 062 49
062 H272 2H27 H 0 0 N N N 19.543 -15.334 20.038 -2.383 1.345 -3.390 H272 062 50
062 H36 H36 H 0 1 N N N 16.054 -10.834 20.826 2.817 0.614 -1.270 H36 062 51
062 H371 1H37 H 0 0 N N N 13.807 -10.584 19.571 2.465 -0.495 1.303 H371 062 52
062 H372 2H37 H 0 0 N N N 13.666 -12.282 19.545 2.817 1.241 1.484 H372 062 53
062 H41 H41 H 0 1 N N N 13.841 -9.354 21.903 4.176 -2.025 0.756 H41 062 54
062 H43 H43 H 0 1 N N N 10.677 -11.046 24.531 8.140 -0.603 0.074 H43 062 55
062 H44 H44 H 0 1 N N N 10.733 -13.273 23.227 7.310 1.715 0.088 H44 062 56
062 H531 1H53 H 0 0 N N N 11.244 -14.188 20.949 3.816 2.613 -0.086 H531 062 57
062 H532 2H53 H 0 0 N N N 12.441 -13.542 19.931 5.492 3.212 -0.061 H532 062 58
062 H541 1H54 H 0 0 N N N 13.206 -15.624 20.928 4.251 3.961 1.783 H541 062 59
062 H542 2H54 H 0 0 N N N 13.073 -14.980 22.477 3.843 2.455 2.215 H542 062 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
062 N1 C2 DOUB Y N 1
062 N1 C6 SING Y N 2
062 N1 O60 SING N N 3
062 C2 C3 SING Y N 4
062 C2 H2 SING N N 5
062 C3 C4 DOUB Y N 6
062 C3 C10 SING Y N 7
062 C4 C5 SING Y N 8
062 C4 C12 SING N N 9
062 C5 C6 DOUB Y N 10
062 C5 H5 SING N N 11
062 C6 H6 SING N N 12
062 C10 C11 DOUB Y N 13
062 C10 C13 SING Y N 14
062 C11 C12 SING N N 15
062 C11 C16 SING Y N 16
062 C12 O21 SING N N 17
062 C12 C22 SING N N 18
062 C13 C14 DOUB Y N 19
062 C13 H13 SING N N 20
062 C14 C15 SING Y N 21
062 C14 H14 SING N N 22
062 C15 C16 DOUB Y N 23
062 C15 H15 SING N N 24
062 C16 H16 SING N N 25
062 O21 H21 SING N N 26
062 C22 N23 SING N N 27
062 C22 O63 DOUB N N 28
062 N23 C24 SING N N 29
062 N23 C27 SING N N 30
062 C24 C25 SING N N 31
062 C24 C34 SING N N 32
062 C24 H24 SING N N 33
062 C25 C26 SING N N 34
062 C25 H251 SING N N 35
062 C25 H252 SING N N 36
062 C26 C27 SING N N 37
062 C26 H261 SING N N 38
062 C26 H262 SING N N 39
062 C27 H271 SING N N 40
062 C27 H272 SING N N 41
062 C34 N36 SING N N 42
062 C34 O64 DOUB N N 43
062 N36 C37 SING N N 44
062 N36 H36 SING N N 45
062 C37 C38 SING N N 46
062 C37 H371 SING N N 47
062 C37 H372 SING N N 48
062 C38 C41 DOUB Y N 49
062 C38 C45 SING Y N 50
062 C41 C42 SING Y N 51
062 C41 H41 SING N N 52
062 C42 C43 DOUB Y N 53
062 C42 CL1 SING N N 54
062 C43 C44 SING Y N 55
062 C43 H43 SING N N 56
062 C44 C45 DOUB Y N 57
062 C44 H44 SING N N 58
062 C45 C53 SING N N 59
062 C53 N54 SING N N 60
062 C53 H531 SING N N 61
062 C53 H532 SING N N 62
062 N54 H541 SING N N 63
062 N54 H542 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
062 SMILES ACDLabs 10.04 "O=C(NCc1cc(Cl)ccc1CN)C5N(C(=O)C4(O)c2ccccc2c3c[n+]([O-])ccc34)CCC5"
062 SMILES_CANONICAL CACTVS 3.341 "NCc1ccc(Cl)cc1CNC(=O)[C@@H]2CCCN2C(=O)[C@@]3(O)c4ccccc4c5c[n+]([O-])ccc35"
062 SMILES CACTVS 3.341 "NCc1ccc(Cl)cc1CNC(=O)[CH]2CCCN2C(=O)[C]3(O)c4ccccc4c5c[n+]([O-])ccc35"
062 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)-c3c[n+](ccc3[C@]2(C(=O)N4CCC[C@H]4C(=O)NCc5cc(ccc5CN)Cl)O)[O-]"
062 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)-c3c[n+](ccc3C2(C(=O)N4CCCC4C(=O)NCc5cc(ccc5CN)Cl)O)[O-]"
062 InChI InChI 1.03
"InChI=1S/C26H25ClN4O4/c27-18-8-7-16(13-28)17(12-18)14-29-24(32)23-6-3-10-31(23)25(33)26(34)21-5-2-1-4-19(21)20-15-30(35)11-9-22(20)26/h1-2,4-5,7-9,11-12,15,23,34H,3,6,10,13-14,28H2,(H,29,32)/t23-,26+/m0/s1"
062 InChIKey InChI 1.03 GVACNUIKZUGUGU-JYFHCDHNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
062 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[2-(aminomethyl)-5-chlorobenzyl]-1-{[(5R)-5-hydroxy-2-oxido-5H-indeno[1,2-c]pyridin-5-yl]carbonyl}-L-prolinamide"
062 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-N-[[2-(aminomethyl)-5-chloro-phenyl]methyl]-1-[(5R)-5-hydroxy-2-oxido-indeno[3,2-c]pyridin-2-ium-5-yl]carbonyl-pyrrolidine-2-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
062 "Create component" 2005-05-26 RCSB
062 "Modify aromatic_flag" 2011-06-04 RCSB
062 "Modify descriptor" 2011-06-04 RCSB
#