data_06S # _chem_comp.id 06S _chem_comp.name ;O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 N7 O16 P3 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-17 _chem_comp.pdbx_modified_date 2015-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 797.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 06S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R09 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 06S O13 O13 O 0 1 N N N 17.101 -4.706 40.942 -8.126 -5.071 0.984 O13 06S 1 06S C12 C12 C 0 1 N N N 16.599 -3.591 41.106 -7.835 -4.140 0.249 C12 06S 2 06S C10 C10 C 0 1 Y N N 16.910 -2.870 42.202 -6.699 -3.267 0.560 C10 06S 3 06S N4 N4 N 0 1 Y N N 17.675 -3.115 43.276 -5.786 -3.218 1.558 N4 06S 4 06S C14 C14 C 0 1 Y N N 17.615 -2.001 44.055 -4.976 -2.221 1.348 C14 06S 5 06S N3 N3 N 0 1 N N N 15.765 -3.089 40.194 -8.546 -3.897 -0.863 N3 06S 6 06S C13 C13 C 0 1 N N N 15.230 -1.883 40.316 -8.245 -2.897 -1.663 C13 06S 7 06S N5 N5 N 0 1 N N N 14.399 -1.440 39.364 -9.006 -2.697 -2.783 N5 06S 8 06S N2 N2 N 0 1 N N N 15.499 -1.136 41.389 -7.206 -2.055 -1.421 N2 06S 9 06S C11 C11 C 0 1 Y N N 16.349 -1.614 42.330 -6.416 -2.224 -0.313 C11 06S 10 06S N1 N1 N 0 1 Y N N 16.804 -1.099 43.470 -5.332 -1.579 0.198 N1 06S 11 06S C5 C5 C 0 1 N N R 16.426 0.207 43.988 -4.669 -0.408 -0.381 C5 06S 12 06S C6 C6 C 0 1 N N R 16.712 1.298 42.976 -5.331 0.892 0.129 C6 06S 13 06S O8 O8 O 0 1 N N N 18.078 1.736 43.071 -6.259 1.392 -0.836 O8 06S 14 06S C7 C7 C 0 1 N N S 15.738 2.380 43.353 -4.149 1.872 0.302 C7 06S 15 06S O9 O9 O 0 1 N N N 16.513 3.304 44.101 -4.311 3.008 -0.550 O9 06S 16 06S P2 P2 P 0 1 N N N 16.051 4.784 44.545 -4.380 4.517 0.005 P2 06S 17 06S S2 S2 S 0 1 N N N 14.269 4.732 45.638 -2.520 5.034 0.882 S2 06S 18 06S O11 O11 O 0 1 N N N 15.795 5.598 43.292 -5.450 4.621 1.022 O11 06S 19 06S O12 O12 O 0 1 N N N 17.177 5.200 45.465 -4.697 5.523 -1.212 O12 06S 20 06S O6 O6 O 0 1 N N N 15.018 0.277 44.238 -3.301 -0.329 0.075 O6 06S 21 06S C8 C8 C 0 1 N N R 14.652 1.665 44.183 -2.913 1.048 -0.123 C8 06S 22 06S C9 C9 C 0 1 N N N 13.232 1.785 43.645 -1.712 1.396 0.759 C9 06S 23 06S O7 O7 O 0 1 N N N 13.212 1.927 42.219 -0.553 0.712 0.277 O7 06S 24 06S P1 P1 P 0 1 N N S 11.995 1.368 41.330 0.895 0.847 0.968 P1 06S 25 06S O10 O10 O 0 1 N N N 11.530 0.091 41.891 0.790 0.500 2.403 O10 06S 26 06S S1 S1 S 0 1 N N N 12.613 1.125 39.387 1.589 2.840 0.772 S1 06S 27 06S O3 O3 O 0 1 N N N 10.839 2.436 41.431 1.928 -0.155 0.247 O3 06S 28 06S C2 C2 C 0 1 N N S 10.701 3.568 40.576 3.270 -0.347 0.699 C2 06S 29 06S C3 C3 C 0 1 N N R 11.809 4.575 40.829 4.272 0.038 -0.407 C3 06S 30 06S C4 C4 C 0 1 N N N 11.972 5.578 39.674 5.177 1.170 0.082 C4 06S 31 06S O1 O1 O 0 1 N N N 11.838 6.900 40.170 6.023 1.598 -0.987 O1 06S 32 06S P P P 0 1 N N N 11.914 8.246 39.288 7.108 2.778 -0.829 P 06S 33 06S S S S 0 1 N N N 12.943 7.922 37.522 6.109 4.610 -0.453 S 06S 34 06S O4 O4 O 0 1 N N N 12.686 9.273 40.162 7.966 2.904 -2.185 O4 06S 35 06S O5 O5 O 0 1 N N N 10.502 8.531 38.840 8.012 2.468 0.301 O5 06S 36 06S O O O 0 1 N N N 11.406 5.233 42.050 5.061 -1.130 -0.694 O 06S 37 06S C1 C1 C 0 1 N N R 9.481 4.304 41.063 3.547 -1.848 0.956 C1 06S 38 06S O2 O2 O 0 1 N N N 8.392 3.416 41.327 2.325 -2.568 1.137 O2 06S 39 06S C C C 0 1 N N R 10.039 4.899 42.341 4.253 -2.277 -0.355 C 06S 40 06S N N N 0 1 N N N 9.247 6.033 42.751 5.097 -3.452 -0.125 N 06S 41 06S C18 C18 C 0 1 N N N 8.467 5.938 43.918 4.852 -4.591 -0.798 C18 06S 42 06S O15 O15 O 0 1 N N N 8.478 4.892 44.588 3.931 -4.633 -1.590 O15 06S 43 06S C16 C16 C 0 1 N N N 9.231 7.157 42.019 6.132 -3.379 0.768 C16 06S 44 06S C15 C15 C 0 1 N N N 8.446 8.226 42.418 6.910 -4.462 0.980 C15 06S 45 06S C17 C17 C 0 1 N N N 7.688 8.108 43.577 6.637 -5.656 0.270 C17 06S 46 06S N6 N6 N 0 1 N N N 7.699 6.978 44.311 5.612 -5.685 -0.606 N6 06S 47 06S O14 O14 O 0 1 N N N 6.972 9.049 43.933 7.326 -6.646 0.444 O14 06S 48 06S H1 H1 H 0 1 N N N 18.134 -1.862 44.992 -4.150 -1.944 1.986 H1 06S 49 06S H2 H2 H 0 1 N N N 14.190 -2.017 38.575 -9.752 -3.287 -2.974 H2 06S 50 06S H3 H3 H 0 1 N N N 13.988 -0.532 39.442 -8.800 -1.965 -3.386 H3 06S 51 06S H4 H4 H 0 1 N N N 15.079 -0.235 41.497 -7.020 -1.330 -2.038 H4 06S 52 06S H5 H5 H 0 1 N N N 16.986 0.419 44.911 -4.704 -0.452 -1.469 H5 06S 53 06S H6 H6 H 0 1 N N N 16.489 0.931 41.963 -5.829 0.718 1.083 H6 06S 54 06S H7 H7 H 0 1 N N N 18.657 1.024 42.825 -7.021 0.816 -0.984 H7 06S 55 06S H8 H8 H 0 1 N N N 15.295 2.839 42.457 -4.062 2.185 1.342 H8 06S 56 06S H9 H9 H 0 1 N N N 13.471 5.431 44.887 -2.720 6.298 1.294 H9 06S 57 06S H10 H10 H 0 1 N N N 17.606 5.971 45.112 -4.035 5.508 -1.917 H10 06S 58 06S H11 H11 H 0 1 N N N 14.670 2.086 45.199 -2.679 1.229 -1.172 H11 06S 59 06S H12 H12 H 0 1 N N N 12.754 2.666 44.097 -1.538 2.471 0.729 H12 06S 60 06S H13 H13 H 0 1 N N N 12.670 0.881 43.920 -1.914 1.089 1.785 H13 06S 61 06S H14 H14 H 0 1 N N N 12.409 -0.145 39.195 1.635 3.015 -0.561 H14 06S 62 06S H15 H15 H 0 1 N N N 10.625 3.303 39.511 3.457 0.236 1.602 H15 06S 63 06S H16 H16 H 0 1 N N N 12.759 4.041 40.978 3.734 0.350 -1.302 H16 06S 64 06S H17 H17 H 0 1 N N N 11.198 5.391 38.915 4.564 2.007 0.417 H17 06S 65 06S H18 H18 H 0 1 N N N 12.967 5.456 39.221 5.790 0.814 0.910 H18 06S 66 06S H19 H19 H 0 1 N N N 12.008 8.078 36.632 5.335 4.762 -1.543 H19 06S 67 06S H20 H20 H 0 1 N N N 12.133 10.027 40.328 8.641 3.596 -2.161 H20 06S 68 06S H21 H21 H 0 1 N N N 9.199 5.099 40.357 4.205 -1.981 1.815 H21 06S 69 06S H22 H22 H 0 1 N N N 7.643 3.915 41.631 2.446 -3.513 1.301 H22 06S 70 06S H23 H23 H 0 1 N N N 10.008 4.129 43.126 3.521 -2.477 -1.137 H23 06S 71 06S H24 H24 H 0 1 N N N 9.828 7.228 41.122 6.325 -2.460 1.301 H24 06S 72 06S H25 H25 H 0 1 N N N 8.423 9.137 41.838 7.730 -4.418 1.682 H25 06S 73 06S H26 H26 H 0 1 N N N 7.143 6.910 45.140 5.422 -6.498 -1.100 H26 06S 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 06S S P SING N N 1 06S O5 P DOUB N N 2 06S P O4 SING N N 3 06S P O1 SING N N 4 06S N5 C13 SING N N 5 06S S1 P1 SING N N 6 06S C4 O1 SING N N 7 06S C4 C3 SING N N 8 06S N3 C13 DOUB N N 9 06S N3 C12 SING N N 10 06S C13 N2 SING N N 11 06S C2 C3 SING N N 12 06S C2 C1 SING N N 13 06S C2 O3 SING N N 14 06S C3 O SING N N 15 06S O13 C12 DOUB N N 16 06S C1 O2 SING N N 17 06S C1 C SING N N 18 06S C12 C10 SING N N 19 06S P1 O3 SING N N 20 06S P1 O10 DOUB N N 21 06S P1 O7 SING N N 22 06S N2 C11 SING N N 23 06S C16 C15 DOUB N N 24 06S C16 N SING N N 25 06S O C SING N N 26 06S C10 C11 DOUB Y N 27 06S C10 N4 SING Y N 28 06S O7 C9 SING N N 29 06S C11 N1 SING Y N 30 06S C N SING N N 31 06S C15 C17 SING N N 32 06S N C18 SING N N 33 06S C6 O8 SING N N 34 06S C6 C7 SING N N 35 06S C6 C5 SING N N 36 06S N4 C14 DOUB Y N 37 06S O11 P2 DOUB N N 38 06S C7 O9 SING N N 39 06S C7 C8 SING N N 40 06S N1 C5 SING N N 41 06S N1 C14 SING Y N 42 06S C17 O14 DOUB N N 43 06S C17 N6 SING N N 44 06S C9 C8 SING N N 45 06S C18 N6 SING N N 46 06S C18 O15 DOUB N N 47 06S C5 O6 SING N N 48 06S O9 P2 SING N N 49 06S C8 O6 SING N N 50 06S P2 O12 SING N N 51 06S P2 S2 SING N N 52 06S C14 H1 SING N N 53 06S N5 H2 SING N N 54 06S N5 H3 SING N N 55 06S N2 H4 SING N N 56 06S C5 H5 SING N N 57 06S C6 H6 SING N N 58 06S O8 H7 SING N N 59 06S C7 H8 SING N N 60 06S S2 H9 SING N N 61 06S O12 H10 SING N N 62 06S C8 H11 SING N N 63 06S C9 H12 SING N N 64 06S C9 H13 SING N N 65 06S S1 H14 SING N N 66 06S C2 H15 SING N N 67 06S C3 H16 SING N N 68 06S C4 H17 SING N N 69 06S C4 H18 SING N N 70 06S S H19 SING N N 71 06S O4 H20 SING N N 72 06S C1 H21 SING N N 73 06S O2 H22 SING N N 74 06S C H23 SING N N 75 06S C16 H24 SING N N 76 06S C15 H25 SING N N 77 06S N6 H26 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 06S SMILES ACDLabs 12.01 "O=P(O)(S)OC1C(O)C(OC1COP(=O)(S)OC3C(OC(N2C(=O)NC(=O)C=C2)C3O)COP(=O)(O)S)n4c5NC(=NC(=O)c5nc4)N" 06S InChI InChI 1.03 ;InChI=1S/C19H26N7O16P3S3/c20-18-23-14-9(15(30)24-18)21-5-26(14)17-10(28)12(41-44(34,35)47)7(40-17)4-38-45(36,48)42-13-6(3-37-43(32,33)46)39-16(11(13)29)25-2-1-8(27)22-19(25)31/h1-2,5-7,10-13,16-17,28-29H,3-4H2,(H,36,48)(H,22,27,31)(H2,32,33,46)(H2,34,35,47)(H3,20,23,24,30)/t6-,7-,10-,11-,12-,13-,16-,17-,45+/m1/s1 ; 06S InChIKey InChI 1.03 PRHQISJBVGJFKN-VXGQQCRQSA-N 06S SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P@@](S)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO[P](O)(S)=O)N5C=CC(=O)NC5=O)[C@@H](O[P](O)(S)=O)[C@H]3O)c2N1" 06S SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](S)(=O)O[CH]4[CH](O)[CH](O[CH]4CO[P](O)(S)=O)N5C=CC(=O)NC5=O)[CH](O[P](O)(S)=O)[CH]3O)c2N1" 06S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O[C@@H]4[C@H](O[C@H]([C@@H]4O)N5C=CC(=O)NC5=O)COP(=O)(O)S)S)OP(=O)(O)S)O)NC(=NC2=O)N" 06S SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(OC4C(OC(C4O)N5C=CC(=O)NC5=O)COP(=O)(O)S)S)OP(=O)(O)S)O)NC(=NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 06S "SYSTEMATIC NAME" ACDLabs 12.01 ;O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate (non-preferred name) ; 06S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-2-[[oxidanyl(sulfanyl)phosphoryl]oxymethyl]oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 06S "Create component" 2014-10-17 PDBJ 06S "Initial release" 2015-01-14 RCSB #