data_08L # _chem_comp.id 08L _chem_comp.name "(2S,5S,8S,13S,16Z)-5-benzyl-2-(cyclohexylmethyl)-3,6,9,15,18-pentaoxo-8-{3-[(pyrazin-2-ylcarbonyl)amino]propyl}-1,4,7,10,14-pentaazacyclooctadec-16-ene-13-carboxylic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H46 N8 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-10-13 _chem_comp.pdbx_modified_date 2012-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 718.799 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 08L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3U4W _chem_comp.pdbx_subcomponent_list "FUM ALC PHE 08M DAB" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 08L C6 C6 C 0 1 N N N -58.592 44.985 8.847 -4.954 -1.468 0.352 C1 FUM 1 08L O7 O7 O 0 1 N N N -58.572 43.853 8.336 -3.875 -1.248 -0.163 O1 FUM 2 08L C8 C8 C 0 1 N N N -57.425 45.914 8.624 -5.804 -0.367 0.855 C2 FUM 3 08L C9 C9 C 0 1 N N N -56.610 45.837 7.507 -5.399 0.905 0.816 C3 FUM 4 08L C10 C10 C 0 1 N N N -55.952 44.525 7.204 -4.050 1.270 0.345 C4 FUM 5 08L O11 O11 O 0 1 N N N -56.284 44.284 6.030 -3.245 0.415 0.030 O3 FUM 6 08L N12 N12 N 0 1 N N N -55.386 43.454 7.739 -3.730 2.602 0.272 N ALC 7 08L C13 C13 C 0 1 N N S -54.763 42.358 7.062 -2.278 2.888 0.177 CA ALC 8 08L C14 C14 C 0 1 N N N -55.207 41.144 7.799 -1.684 2.052 -0.926 C ALC 9 08L O15 O15 O 0 1 N N N -56.071 40.584 7.112 -2.398 1.446 -1.698 O ALC 10 08L C16 C16 C 0 1 N N N -53.225 42.377 7.206 -1.600 2.542 1.504 CB ALC 11 08L C17 C17 C 0 1 N N N -52.585 43.676 6.601 -2.123 3.470 2.601 CG ALC 12 08L C52 C52 C 0 1 N N N -52.785 43.750 5.070 -1.703 4.909 2.295 CD2 ALC 13 08L C51 C51 C 0 1 N N N -52.084 44.947 4.456 -2.226 5.838 3.393 CE2 ALC 14 08L C50 C50 C 0 1 N N N -50.614 44.807 4.708 -1.643 5.412 4.742 CZ ALC 15 08L C49 C49 C 0 1 N N N -50.347 44.815 6.169 -2.063 3.973 5.048 CE1 ALC 16 08L C48 C48 C 0 1 N N N -51.131 43.736 6.983 -1.540 3.045 3.950 CD1 ALC 17 08L N28 N28 N 0 1 N N N -55.199 40.469 8.923 -0.327 1.990 -1.038 N PHE 18 08L C27 C27 C 0 1 N N S -55.518 39.293 9.760 0.200 1.165 -2.143 CA PHE 19 08L C25 C25 C 0 1 N N N -56.283 39.896 10.869 0.252 -0.272 -1.691 C PHE 20 08L O26 O26 O 0 1 N N N -56.989 38.961 11.294 -0.185 -0.598 -0.607 O PHE 21 08L C29 C29 C 0 1 N N N -54.290 38.553 10.215 1.608 1.638 -2.511 CB PHE 22 08L C30 C30 C 0 1 Y N N -53.365 38.414 9.018 1.539 3.040 -3.060 CG PHE 23 08L C47 C47 C 0 1 Y N N -53.579 37.401 8.044 1.649 4.122 -2.207 CD1 PHE 24 08L C43 C43 C 0 1 Y N N -52.260 39.267 8.876 1.373 3.243 -4.417 CD2 PHE 25 08L C46 C46 C 0 1 Y N N -52.628 37.181 7.058 1.585 5.408 -2.710 CE1 PHE 26 08L C44 C44 C 0 1 Y N N -51.258 38.987 7.903 1.310 4.529 -4.920 CE2 PHE 27 08L C45 C45 C 0 1 Y N N -51.527 38.008 6.913 1.413 5.612 -4.066 CZ PHE 28 08L C21 C21 C 0 1 N N N -58.366 42.604 12.233 -0.666 -3.028 -1.920 C21 08M 29 08L O22 O22 O 0 1 N N N -57.582 43.451 11.754 -1.537 -2.484 -2.565 O22 08M 30 08L C23 C23 C 0 1 N N S -57.536 41.350 12.504 0.784 -2.593 -2.022 C23 08M 31 08L N24 N24 N 0 1 N N N -56.738 41.074 11.293 0.803 -1.201 -2.532 N24 08M 32 08L C31 C31 C 0 1 N N N -56.634 41.548 13.673 1.439 -2.652 -0.641 C31 08M 33 08L C32 C32 C 0 1 N N N -55.883 40.259 14.000 2.909 -2.247 -0.756 C32 08M 34 08L C33 C33 C 0 1 N N N -55.428 40.353 15.431 3.564 -2.307 0.626 C33 08M 35 08L N34 N34 N 0 1 N N N -54.144 39.688 15.569 4.973 -1.918 0.516 N34 08M 36 08L C35 C35 C 0 1 N N N -53.839 38.863 16.737 5.754 -1.898 1.614 C35 08M 37 08L O36 O36 O 0 1 N N N -54.543 38.889 17.707 5.290 -2.200 2.695 O36 08M 38 08L C37 C37 C 0 1 Y N N -52.442 38.293 16.829 7.178 -1.505 1.502 C37 08M 39 08L N38 N38 N 0 1 Y N N -51.657 38.359 15.728 7.687 -1.168 0.320 N38 08M 40 08L C39 C39 C 0 1 Y N N -50.487 37.744 15.791 8.954 -0.819 0.225 C39 08M 41 08L C40 C40 C 0 1 Y N N -49.913 37.500 17.027 9.759 -0.803 1.355 C40 08M 42 08L N41 N41 N 0 1 Y N N -50.682 37.424 18.104 9.259 -1.137 2.532 N41 08M 43 08L C42 C42 C 0 1 Y N N -51.956 37.897 18.058 7.988 -1.483 2.637 C42 08M 44 08L N5 N5 N 0 1 N N N -59.630 45.031 9.665 -5.432 -2.741 0.485 N DAB 45 08L C3 C3 C 0 1 N N S -60.591 43.966 9.883 -4.631 -3.820 -0.124 CA DAB 46 08L C2 C2 C 0 1 N N N -61.629 43.953 8.812 -4.658 -5.032 0.771 C DAB 47 08L O4 O4 O 0 1 N N N -61.972 45.058 8.300 -4.950 -4.916 1.938 O DAB 48 08L C18 C18 C 0 1 N N N -61.328 44.145 11.218 -3.187 -3.347 -0.298 CB DAB 49 08L C19 C19 C 0 1 N N N -60.405 44.386 12.389 -2.387 -4.448 -0.998 CG DAB 50 08L N20 N20 N 0 1 N N N -59.472 43.277 12.455 -0.968 -4.046 -1.065 ND DAB 51 08L O1 O1 O 0 1 N N N -62.465 43.019 8.855 -4.358 -6.242 0.273 OXT DAB 52 08L H8 H8 H 0 1 N N N -55.395 43.405 8.738 -4.402 3.302 0.282 H ALC 53 08L H9 H9 H 0 1 N N N -55.026 42.396 5.995 -2.128 3.945 -0.045 HA ALC 54 08L H10 H10 H 0 1 N N N -52.974 42.329 8.276 -1.822 1.508 1.766 HB2 ALC 55 08L H11 H11 H 0 1 N N N -52.814 41.505 6.676 -0.522 2.668 1.405 HB3 ALC 56 08L H12 H12 H 0 1 N N N -53.096 44.556 7.019 -3.211 3.410 2.640 HG ALC 57 08L H47 H47 H 0 1 N N N -52.374 42.835 4.619 -0.615 4.970 2.256 HD23 ALC 58 08L H48 H48 H 0 1 N N N -53.862 43.830 4.861 -2.118 5.213 1.334 HD22 ALC 59 08L H45 H45 H 0 1 N N N -52.456 45.875 4.915 -1.927 6.863 3.175 HE23 ALC 60 08L H46 H46 H 0 1 N N N -52.277 44.980 3.374 -3.314 5.777 3.432 HE22 ALC 61 08L H43 H43 H 0 1 N N N -50.260 43.858 4.279 -0.556 5.472 4.703 HZ3 ALC 62 08L H44 H44 H 0 1 N N N -50.083 45.647 4.237 -2.016 6.074 5.524 HZ2 ALC 63 08L H41 H41 H 0 1 N N N -49.273 44.630 6.315 -1.648 3.670 6.009 HE13 ALC 64 08L H42 H42 H 0 1 N N N -50.635 45.803 6.557 -3.151 3.913 5.087 HE12 ALC 65 08L H39 H39 H 0 1 N N N -51.061 43.985 8.052 -1.839 2.019 4.168 HD12 ALC 66 08L H40 H40 H 0 1 N N N -50.677 42.753 6.788 -0.452 3.105 3.911 HD13 ALC 67 08L H21 H21 H 0 1 N N N -54.718 41.078 9.554 0.259 2.462 -0.426 H PHE 68 08L H20 H20 H 0 1 N N N -56.081 38.513 9.226 -0.454 1.254 -3.011 HA PHE 69 08L H22 H22 H 0 1 N N N -53.787 39.113 11.017 2.239 1.626 -1.622 HB2 PHE 70 08L H23 H23 H 0 1 N N N -54.568 37.559 10.595 2.029 0.973 -3.264 HB3 PHE 71 08L H38 H38 H 0 1 N N N -54.479 36.805 8.071 1.783 3.963 -1.147 HD1 PHE 72 08L H34 H34 H 0 1 N N N -52.169 40.139 9.507 1.292 2.398 -5.084 HD2 PHE 73 08L H37 H37 H 0 1 N N N -52.750 36.344 6.387 1.670 6.254 -2.043 HE1 PHE 74 08L H35 H35 H 0 1 N N N -50.313 39.510 7.919 1.181 4.688 -5.981 HE2 PHE 75 08L H36 H36 H 0 1 N N N -50.879 37.908 6.054 1.363 6.616 -4.459 HZ PHE 76 08L H18 H18 H 0 1 N N N -58.200 40.505 12.739 1.317 -3.249 -2.711 H18 08M 77 08L H19 H19 H 0 1 N N N -56.512 41.865 10.724 1.176 -0.966 -3.396 H19 08M 78 08L H24 H24 H 0 1 N N N -55.906 42.338 13.435 0.925 -1.968 0.035 H24 08M 79 08L H25 H25 H 0 1 N N N -57.236 41.844 14.545 1.371 -3.668 -0.250 H25 08M 80 08L H26 H26 H 0 1 N N N -56.546 39.391 13.869 3.423 -2.931 -1.431 H26 08M 81 08L H27 H27 H 0 1 N N N -55.016 40.146 13.333 2.977 -1.232 -1.147 H27 08M 82 08L H28 H28 H 0 1 N N N -55.328 41.410 15.717 3.051 -1.622 1.301 H28 08M 83 08L H29 H29 H 0 1 N N N -56.167 39.867 16.085 3.497 -3.322 1.016 H29 08M 84 08L H30 H30 H 0 1 N N N -53.456 39.796 14.852 5.343 -1.677 -0.348 H30 08M 85 08L H31 H31 H 0 1 N N N -49.984 37.435 14.886 9.367 -0.545 -0.735 H31 08M 86 08L H32 H32 H 0 1 N N N -48.844 37.372 17.113 10.797 -0.517 1.273 H32 08M 87 08L H33 H33 H 0 1 N N N -52.564 37.960 18.949 7.578 -1.751 3.599 H33 08M 88 08L H3 H3 H 0 1 N N N -59.765 45.877 10.180 -6.258 -2.927 0.959 H DAB 89 08L H2 H2 H 0 1 N N N -60.018 43.027 9.882 -5.049 -4.078 -1.097 HA DAB 90 08L H13 H13 H 0 1 N N N -61.998 45.013 11.126 -3.171 -2.441 -0.904 HB2 DAB 91 08L H14 H14 H 0 1 N N N -61.902 43.228 11.418 -2.750 -3.142 0.679 HB3 DAB 92 08L H15 H15 H 0 1 N N N -59.858 45.330 12.249 -2.476 -5.377 -0.435 HG2 DAB 93 08L H16 H16 H 0 1 N N N -60.986 44.445 13.321 -2.772 -4.593 -2.007 HG3 DAB 94 08L H17 H17 H 0 1 N N N -59.987 42.624 13.010 -0.289 -4.475 -0.521 HD1 DAB 95 08L H1 H1 H 0 1 N N N -63.283 43.308 8.469 -4.389 -6.990 0.885 HXT DAB 96 08L H4 H4 H 0 1 N N N -57.216 46.670 9.366 -6.779 -0.607 1.266 H21 FUM 97 08L H6 H6 H 0 1 N N N -56.453 46.697 6.873 -6.067 1.685 1.166 H31 FUM 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 08L C6 N5 SING N N 1 08L O7 C6 DOUB N N 2 08L C8 C6 SING N N 3 08L C9 C8 DOUB N Z 4 08L C10 C9 SING N N 5 08L C10 N12 SING N N 6 08L O11 C10 DOUB N N 7 08L N12 H8 SING N N 8 08L C13 C16 SING N N 9 08L C13 N12 SING N N 10 08L C13 C14 SING N N 11 08L C13 H9 SING N N 12 08L C14 N28 SING N N 13 08L O15 C14 DOUB N N 14 08L C16 H10 SING N N 15 08L C16 H11 SING N N 16 08L C17 C48 SING N N 17 08L C17 C16 SING N N 18 08L C17 H12 SING N N 19 08L C52 C17 SING N N 20 08L C52 H47 SING N N 21 08L C52 H48 SING N N 22 08L C51 C50 SING N N 23 08L C51 C52 SING N N 24 08L C51 H45 SING N N 25 08L C51 H46 SING N N 26 08L C50 C49 SING N N 27 08L C50 H43 SING N N 28 08L C50 H44 SING N N 29 08L C49 C48 SING N N 30 08L C49 H41 SING N N 31 08L C49 H42 SING N N 32 08L C48 H39 SING N N 33 08L C48 H40 SING N N 34 08L N28 C27 SING N N 35 08L N28 H21 SING N N 36 08L C27 C29 SING N N 37 08L C27 C25 SING N N 38 08L C27 H20 SING N N 39 08L C25 N24 SING N N 40 08L C25 O26 DOUB N N 41 08L C29 H22 SING N N 42 08L C29 H23 SING N N 43 08L C30 C29 SING N N 44 08L C47 C30 DOUB Y N 45 08L C47 H38 SING N N 46 08L C43 C30 SING Y N 47 08L C43 H34 SING N N 48 08L C46 C47 SING Y N 49 08L C46 H37 SING N N 50 08L C44 C43 DOUB Y N 51 08L C44 H35 SING N N 52 08L C45 C46 DOUB Y N 53 08L C45 C44 SING Y N 54 08L C45 H36 SING N N 55 08L C21 N20 SING N N 56 08L C21 C23 SING N N 57 08L O22 C21 DOUB N N 58 08L C23 C31 SING N N 59 08L C23 H18 SING N N 60 08L N24 C23 SING N N 61 08L N24 H19 SING N N 62 08L C31 C32 SING N N 63 08L C31 H24 SING N N 64 08L C31 H25 SING N N 65 08L C32 C33 SING N N 66 08L C32 H26 SING N N 67 08L C32 H27 SING N N 68 08L C33 N34 SING N N 69 08L C33 H28 SING N N 70 08L C33 H29 SING N N 71 08L N34 C35 SING N N 72 08L N34 H30 SING N N 73 08L C35 C37 SING N N 74 08L C35 O36 DOUB N N 75 08L C37 C42 DOUB Y N 76 08L N38 C39 DOUB Y N 77 08L N38 C37 SING Y N 78 08L C39 C40 SING Y N 79 08L C39 H31 SING N N 80 08L C40 N41 DOUB Y N 81 08L C40 H32 SING N N 82 08L C42 N41 SING Y N 83 08L C42 H33 SING N N 84 08L N5 C3 SING N N 85 08L N5 H3 SING N N 86 08L C3 C18 SING N N 87 08L C3 H2 SING N N 88 08L C2 O1 SING N N 89 08L C2 C3 SING N N 90 08L O4 C2 DOUB N N 91 08L C18 C19 SING N N 92 08L C18 H13 SING N N 93 08L C18 H14 SING N N 94 08L C19 N20 SING N N 95 08L C19 H15 SING N N 96 08L C19 H16 SING N N 97 08L N20 H17 SING N N 98 08L O1 H1 SING N N 99 08L C8 H4 SING N N 100 08L C9 H6 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 08L SMILES ACDLabs 12.01 "O=C(O)C1NC(=O)C=CC(=O)NC(C(=O)NC(C(=O)NC(C(=O)NCC1)CCCNC(=O)c2nccnc2)Cc3ccccc3)CC4CCCCC4" 08L InChI InChI 1.03 ;InChI=1S/C36H46N8O8/c45-30-13-14-31(46)42-27(20-23-8-3-1-4-9-23)34(49)44-28(21-24-10-5-2-6-11-24)35(50)43-25(32(47)40-17-15-26(41-30)36(51)52)12-7-16-39-33(48)29-22-37-18-19-38-29/h2,5-6,10-11,13-14,18-19,22-23,25-28H,1,3-4,7-9,12,15-17,20-21H2,(H,39,48)(H,40,47)(H,41,45)(H,42,46)(H,43,50)(H,44,49)(H,51,52)/b14-13-/t25-,26-,27-,28-/m0/s1 ; 08L InChIKey InChI 1.03 LHFIQSGZMYMEJJ-SCQOSXKUSA-N 08L SMILES_CANONICAL CACTVS 3.370 "OC(=O)[C@@H]1CCNC(=O)[C@H](CCCNC(=O)c2cnccn2)NC(=O)[C@H](Cc3ccccc3)NC(=O)[C@H](CC4CCCCC4)NC(=O)\C=C/C(=O)N1" 08L SMILES CACTVS 3.370 "OC(=O)[CH]1CCNC(=O)[CH](CCCNC(=O)c2cnccn2)NC(=O)[CH](Cc3ccccc3)NC(=O)[CH](CC4CCCCC4)NC(=O)C=CC(=O)N1" 08L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)C[C@H]2C(=O)N[C@H](C(=O)NCC[C@H](NC(=O)C=CC(=O)N[C@H](C(=O)N2)CC3CCCCC3)C(=O)O)CCCNC(=O)c4cnccn4" 08L SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CC2C(=O)NC(C(=O)NCCC(NC(=O)C=CC(=O)NC(C(=O)N2)CC3CCCCC3)C(=O)O)CCCNC(=O)c4cnccn4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 08L "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5S,8S,13S,16Z)-5-benzyl-2-(cyclohexylmethyl)-3,6,9,15,18-pentaoxo-8-{3-[(pyrazin-2-ylcarbonyl)amino]propyl}-1,4,7,10,14-pentaazacyclooctadec-16-ene-13-carboxylic acid" 08L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S,5S,8S,13S)-2-(cyclohexylmethyl)-3,6,9,15,18-pentakis(oxidanylidene)-5-(phenylmethyl)-8-[3-(pyrazin-2-ylcarbonylamino)propyl]-1,4,7,10,14-pentazacyclooctadec-16-ene-13-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 08L "Create component" 2011-10-13 RCSB 08L "Modify synonyms" 2011-11-02 RCSB #